RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 CCDC141Q6ZP82 1450 aa4.42□□□□□ -1.7
SYNE1-207ENST00000367255 RPGRIP1LQ68CZ1 1315 aa4.42□□□□□ -1.7
SYNE1-207ENST00000367255 ARHGAP25P42331 645 aa4.42□□□□□ -1.7
SYNE1-207ENST00000367255 ITPRIPQ8IWB1 547 aa4.42□□□□□ -1.7
SYNE1-207ENST00000367255 HACD3Q9P035 362 aa4.42□□□□□ -1.7
SYNE1-207ENST00000367255 C3orf20Q8ND61 904 aa4.42□□□□□ -1.7
SYNE1-207ENST00000367255 LMOD2Q6P5Q4 547 aa4.42□□□□□ -1.7
SYNE1-207ENST00000367255 NBPF11Q86T75 865 aa4.42□□□□□ -1.7
SYNE1-207ENST00000367255 TCHPQ9BT92 498 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 BRD2P25440 801 aaKnown RBP4.41□□□□□ -1.7
SYNE1-207ENST00000367255 WHAMMQ8TF30 809 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 RBM27Q9P2N5 1060 aaKnown RBP4.41□□□□□ -1.7
SYNE1-207ENST00000367255 FAM200AQ8TCP9 573 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 PSMD7P51665 324 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 CCDC192P0DO97 292 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 EZRP15311 586 aaKnown RBP4.41□□□□□ -1.7
SYNE1-207ENST00000367255 HOXB6P17509 224 aaKnown RBP4.41□□□□□ -1.7
SYNE1-207ENST00000367255 ARHGAP45Q92619 1136 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 SLC26A8Q96RN1 970 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 USO1O60763 962 aaKnown RBP4.41□□□□□ -1.7
SYNE1-207ENST00000367255 B4GALNT4Q76KP1 1039 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 C14orf37Q86TY3 774 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 INTS3Q68E01 1043 aaKnown RBP4.41□□□□□ -1.7
SYNE1-207ENST00000367255 PRPHP41219 470 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 GIGYF2Q6Y7W6 1299 aaKnown RBP4.41□□□□□ -1.7
SYNE1-207ENST00000367255 TEX14Q8IWB6 1497 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 CCDC196A0A1B0GTZ2 297 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 CBX1P83916 185 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 SNX21Q969T3 373 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 RABGAP1Q9Y3P9 1069 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 CWC25Q9NXE8 425 aaPredicted RBP4.41□□□□□ -1.7
SYNE1-207ENST00000367255 DAAM1Q9Y4D1 1078 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 DNAJC8O75937 253 aaPredicted RBP4.41□□□□□ -1.7
SYNE1-207ENST00000367255 SPAG1Q07617 926 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 ZSCAN31Q96LW9 406 aaPredicted RBP4.41□□□□□ -1.7
SYNE1-207ENST00000367255 TPX2Q9ULW0 747 aaKnown RBP4.41□□□□□ -1.7
SYNE1-207ENST00000367255 CADPSQ9ULU8 1353 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 FAM129AQ9BZQ8 928 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 ENO4A6NNW6 628 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 ERC2O15083 957 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 CFAP58Q5T655 872 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 SASS6Q6UVJ0 657 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 NLRP5P59047 1200 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 RMDN2Q96LZ7 410 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 EVI5O60447 810 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 CDK5RAP3Q96JB5 506 aa4.41□□□□□ -1.7
SYNE1-207ENST00000367255 KANK4Q5T7N3 995 aaPredicted RBP4.41□□□□□ -1.7
SYNE1-207ENST00000367255 KIF24Q5T7B8 1368 aa4.4□□□□□ -1.7
SYNE1-207ENST00000367255 CDKL5O76039 1030 aa4.4□□□□□ -1.7
SYNE1-207ENST00000367255 UHRF1BP1Q6BDS2 1440 aa4.4□□□□□ -1.7
SYNE1-207ENST00000367255 NUTM2FA1L443 756 aa4.4□□□□□ -1.7
SYNE1-207ENST00000367255 KLHL40Q2TBA0 621 aa4.4□□□□□ -1.7
SYNE1-207ENST00000367255 GORABQ5T7V8 394 aa4.4□□□□□ -1.7
SYNE1-207ENST00000367255 ARFGAP2Q8N6H7 521 aa4.4□□□□□ -1.7
SYNE1-207ENST00000367255 SECISBP2LQ93073 1101 aaKnown RBP4.4□□□□□ -1.7
SYNE1-207ENST00000367255 MED4Q9NPJ6 270 aa4.4□□□□□ -1.7
SYNE1-207ENST00000367255 PLVAPQ9BX97 442 aa4.4□□□□□ -1.7
SYNE1-207ENST00000367255 SEPT2Q15019 361 aa4.4□□□□□ -1.7
SYNE1-207ENST00000367255 ENOX2Q16206 610 aaKnown RBP4.4□□□□□ -1.7
SYNE1-207ENST00000367255 THOC1Q96FV9 657 aaKnown RBP4.4□□□□□ -1.7
SYNE1-207ENST00000367255 RAB3GAP2Q9H2M9 1393 aa4.4□□□□□ -1.7
SYNE1-207ENST00000367255 YY1AP1Q9H869 796 aa4.4□□□□□ -1.71
SYNE1-207ENST00000367255 IFFO1Q0D2I5 559 aa4.4□□□□□ -1.71
SYNE1-207ENST00000367255 SYCP2LQ5T4T6 812 aa4.4□□□□□ -1.71
SYNE1-207ENST00000367255 CCDC65Q8IXS2 484 aa4.4□□□□□ -1.71
SYNE1-207ENST00000367255 TCP11Q8WWU5 503 aa4.4□□□□□ -1.71
SYNE1-207ENST00000367255 DEUP1Q05D60 604 aa4.4□□□□□ -1.71
SYNE1-207ENST00000367255 MMRN2Q9H8L6 949 aa4.4□□□□□ -1.71
SYNE1-207ENST00000367255 FOXP2O15409 715 aa4.4□□□□□ -1.71
SYNE1-207ENST00000367255 LCMT1Q9UIC8 334 aa4.4□□□□□ -1.71
SYNE1-207ENST00000367255 ASXL2Q76L83 1435 aa4.4□□□□□ -1.71
SYNE1-207ENST00000367255 CEP57Q86XR8 500 aa4.4□□□□□ -1.71
SYNE1-207ENST00000367255 UBE4BO95155 1302 aa4.4□□□□□ -1.71
SYNE1-207ENST00000367255 PPP2R5BQ15173 497 aa4.4□□□□□ -1.71
SYNE1-207ENST00000367255 CCDC27Q2M243 656 aa4.4□□□□□ -1.71
SYNE1-207ENST00000367255 KANK3Q6NY19 840 aa4.4□□□□□ -1.71
SYNE1-207ENST00000367255 ZNF771Q7L3S4 317 aaPredicted RBP4.4□□□□□ -1.71
SYNE1-207ENST00000367255 PLCB1Q9NQ66 1216 aa4.4□□□□□ -1.71
SYNE1-207ENST00000367255 THEGQ9P2T0 379 aa4.4□□□□□ -1.71
SYNE1-207ENST00000367255 SPECC1LQ69YQ0 1117 aa4.4□□□□□ -1.71
SYNE1-207ENST00000367255 CCDC150Q8NCX0 1101 aa4.4□□□□□ -1.71
SYNE1-207ENST00000367255 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.4□□□□□ -1.71
SYNE1-207ENST00000367255 VCX3BQ9H321 246 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 BECN2A8MW95 431 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 ZRANB2O95218 330 aaKnown RBP eCLIP4.39□□□□□ -1.71
SYNE1-207ENST00000367255 PPCSQ9HAB8 311 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 KCNJ6P48051 423 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 HSP90AB3PQ58FF7 597 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 TOP2AP11388 1531 aaKnown RBP4.39□□□□□ -1.71
SYNE1-207ENST00000367255 PIP4K2BP78356 416 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 CCDC170Q8IYT3 715 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 WDR33Q9C0J8 1336 aaKnown RBP4.39□□□□□ -1.71
SYNE1-207ENST00000367255 SKILP12757 684 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 GOLGA6CA6NDK9 693 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 GOLGA6BA6NDN3 693 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 GOLGA6DP0CG33 693 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 CEP112Q8N8E3 955 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 GOLGA6AQ9NYA3 693 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 ATAD2BQ9ULI0 1458 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 SETDB1Q15047 1291 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms