RNA–Protein interactions for RNA: ENST00000361439.8

NSMCE1-201, Transcript of NSE1 homolog, SMC5-SMC6 complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NSMCE1, Length 1,067 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NSMCE1-201ENST00000361439 MEGF6O75095 1541 aa18.44■□□□□ 0.54
NSMCE1-201ENST00000361439 TNS2Q63HR2 1409 aa18.43■□□□□ 0.54
NSMCE1-201ENST00000361439 CCER2I3L3R5 266 aa18.43■□□□□ 0.54
NSMCE1-201ENST00000361439 PDE3BQ13370 1112 aa18.43■□□□□ 0.54
NSMCE1-201ENST00000361439 ZCRB1Q8TBF4 217 aaKnown RBP18.43■□□□□ 0.54
NSMCE1-201ENST00000361439 SPG7Q9UQ90 795 aa18.43■□□□□ 0.54
NSMCE1-201ENST00000361439 WDR43Q15061 677 aaKnown RBP eCLIP18.42■□□□□ 0.54
NSMCE1-201ENST00000361439 KRT27Q7Z3Y8 459 aa18.42■□□□□ 0.54
NSMCE1-201ENST00000361439 AEBP1Q8IUX7 1158 aa18.42■□□□□ 0.54
NSMCE1-201ENST00000361439 MRS2Q9HD23 443 aa18.42■□□□□ 0.54
NSMCE1-201ENST00000361439 HMOX1P09601 288 aa18.41■□□□□ 0.54
NSMCE1-201ENST00000361439 PLEKHO1Q53GL0 409 aaPredicted RBP18.41■□□□□ 0.54
NSMCE1-201ENST00000361439 RSPH6AQ9H0K4 717 aa18.41■□□□□ 0.54
NSMCE1-201ENST00000361439 LRRC37A3O60309 1634 aa18.4■□□□□ 0.54
NSMCE1-201ENST00000361439 PCDH11XQ9BZA7 1347 aa18.4■□□□□ 0.54
NSMCE1-201ENST00000361439 PCDH11YQ9BZA8 1340 aa18.4■□□□□ 0.54
NSMCE1-201ENST00000361439 BCL9O00512 1426 aa18.4■□□□□ 0.54
NSMCE1-201ENST00000361439 NEFMP07197 916 aa18.38■□□□□ 0.53
NSMCE1-201ENST00000361439 PNISRQ8TF01 805 aaKnown RBP18.38■□□□□ 0.53
NSMCE1-201ENST00000361439 PRKAR2BP31323 418 aa18.37■□□□□ 0.53
NSMCE1-201ENST00000361439 PKD1L3Q7Z443 1732 aa18.37■□□□□ 0.53
NSMCE1-201ENST00000361439 CCDC184Q52MB2 194 aa18.36■□□□□ 0.53
NSMCE1-201ENST00000361439 FAM196AQ6ZSG2 479 aa18.36■□□□□ 0.53
NSMCE1-201ENST00000361439 IFNL2Q8IZJ0 200 aa18.36■□□□□ 0.53
NSMCE1-201ENST00000361439 HSP90AB1P08238 724 aaKnown RBP18.35■□□□□ 0.53
NSMCE1-201ENST00000361439 NKX1-1Q15270 411 aaPredicted RBP18.35■□□□□ 0.53
NSMCE1-201ENST00000361439 MARCH10Q8NA82 808 aaPredicted RBP18.35■□□□□ 0.53
NSMCE1-201ENST00000361439 GAS2L2Q8NHY3 880 aa18.35■□□□□ 0.53
NSMCE1-201ENST00000361439 PLEKHF1Q96S99 279 aa18.35■□□□□ 0.53
NSMCE1-201ENST00000361439 ADAMTS8Q9UP79 889 aa18.35■□□□□ 0.53
NSMCE1-201ENST00000361439 DDX54Q8TDD1 881 aaKnown RBP18.34■□□□□ 0.53
NSMCE1-201ENST00000361439 BRWD3Q6RI45 1802 aa18.33■□□□□ 0.53
NSMCE1-201ENST00000361439 CYP27B1O15528 508 aa18.33■□□□□ 0.52
NSMCE1-201ENST00000361439 MIER1Q8N108 512 aa18.33■□□□□ 0.52
NSMCE1-201ENST00000361439 MAPK8IP3Q9UPT6 1336 aa18.32■□□□□ 0.52
NSMCE1-201ENST00000361439 PHKG2P15735 406 aa18.32■□□□□ 0.52
NSMCE1-201ENST00000361439 AKAP4Q5JQC9 854 aa18.32■□□□□ 0.52
NSMCE1-201ENST00000361439 C1orf141Q5JVX7 400 aa18.32■□□□□ 0.52
NSMCE1-201ENST00000361439 ZNF530Q6P9A1 599 aaPredicted RBP18.32■□□□□ 0.52
NSMCE1-201ENST00000361439 RUNDC1Q96C34 613 aa18.32■□□□□ 0.52
NSMCE1-201ENST00000361439 MTHFSDQ2M296 383 aaKnown RBP18.31■□□□□ 0.52
NSMCE1-201ENST00000361439 PHACTR3Q96KR7 559 aa18.31■□□□□ 0.52
NSMCE1-201ENST00000361439 SHANK3Q9BYB0 1731 aa18.31■□□□□ 0.52
NSMCE1-201ENST00000361439 ILDR2Q71H61 639 aa18.3■□□□□ 0.52
NSMCE1-201ENST00000361439 DCAF5Q96JK2 942 aa18.3■□□□□ 0.52
NSMCE1-201ENST00000361439 HTATSF1O43719 755 aaKnown RBP18.29■□□□□ 0.52
NSMCE1-201ENST00000361439 CCDC125Q86Z20 511 aa18.28■□□□□ 0.52
NSMCE1-201ENST00000361439 GNAT3A8MTJ3 354 aa18.27■□□□□ 0.52
NSMCE1-201ENST00000361439 NFE2L2Q16236 605 aa18.27■□□□□ 0.52
NSMCE1-201ENST00000361439 NCBP3Q53F19 620 aaKnown RBP18.27■□□□□ 0.52
NSMCE1-201ENST00000361439 MAP3K5Q99683 1374 aa18.27■□□□□ 0.51
NSMCE1-201ENST00000361439 ERVV-2B6SEH9 535 aa18.26■□□□□ 0.51
NSMCE1-201ENST00000361439 FAM182BQ5T319 152 aa18.25■□□□□ 0.51
NSMCE1-201ENST00000361439 BCL11BQ9C0K0 894 aaPredicted RBP18.25■□□□□ 0.51
NSMCE1-201ENST00000361439 EP400Q96L91 3159 aa18.24■□□□□ 0.51
NSMCE1-201ENST00000361439 LMOD3Q0VAK6 560 aa18.24■□□□□ 0.51
NSMCE1-201ENST00000361439 FAM9BQ8IZU0 186 aa18.24■□□□□ 0.51
NSMCE1-201ENST00000361439 NGEFQ8N5V2 710 aa18.24■□□□□ 0.51
NSMCE1-201ENST00000361439 TMPOP42166 694 aaKnown RBP18.23■□□□□ 0.51
NSMCE1-201ENST00000361439 CCDC146Q8IYE0 955 aa18.23■□□□□ 0.51
NSMCE1-201ENST00000361439 RTF1Q92541 710 aaKnown RBP18.23■□□□□ 0.51
NSMCE1-201ENST00000361439 RNMTO43148 476 aaKnown RBP18.22■□□□□ 0.51
NSMCE1-201ENST00000361439 MPRIPQ6WCQ1 1025 aa18.22■□□□□ 0.51
NSMCE1-201ENST00000361439 KDM6AO15550 1401 aaPredicted RBP18.22■□□□□ 0.51
NSMCE1-201ENST00000361439 CEMIPQ8WUJ3 1361 aa18.21■□□□□ 0.51
NSMCE1-201ENST00000361439 RIPK4P57078 832 aa18.21■□□□□ 0.51
NSMCE1-201ENST00000361439 ADAMTS7Q9UKP4 1686 aa18.21■□□□□ 0.51
NSMCE1-201ENST00000361439 APAF1O14727 1248 aa18.2■□□□□ 0.5
NSMCE1-201ENST00000361439 PRIM1P49642 420 aaKnown RBP18.2■□□□□ 0.5
NSMCE1-201ENST00000361439 NHSQ6T4R5 1651 aa18.19■□□□□ 0.5
NSMCE1-201ENST00000361439 TRIM37O94972 964 aa18.19■□□□□ 0.5
NSMCE1-201ENST00000361439 CABP4P57796 275 aa18.19■□□□□ 0.5
NSMCE1-201ENST00000361439 SF3B2Q13435 895 aaKnown RBP18.19■□□□□ 0.5
NSMCE1-201ENST00000361439 IL17REQ8NFR9 667 aa18.19■□□□□ 0.5
NSMCE1-201ENST00000361439 ACSBG1Q96GR2 724 aa18.19■□□□□ 0.5
NSMCE1-201ENST00000361439 SLC52A2Q9HAB3 445 aa18.19■□□□□ 0.5
NSMCE1-201ENST00000361439 TMOD3Q9NYL9 352 aa18.19■□□□□ 0.5
NSMCE1-201ENST00000361439 SBF2Q86WG5 1849 aa18.19■□□□□ 0.5
NSMCE1-201ENST00000361439 KCNQ2O43526 872 aa18.18■□□□□ 0.5
NSMCE1-201ENST00000361439 CCDC27Q2M243 656 aa18.18■□□□□ 0.5
NSMCE1-201ENST00000361439 UPF1Q92900 1129 aaKnown RBP eCLIP18.18■□□□□ 0.5
NSMCE1-201ENST00000361439 SYTL4Q96C24 671 aaPredicted RBP18.18■□□□□ 0.5
NSMCE1-201ENST00000361439 LGR6Q9HBX8 967 aa18.18■□□□□ 0.5
NSMCE1-201ENST00000361439 MRC1P22897 1456 aa18.18■□□□□ 0.5
NSMCE1-201ENST00000361439 PLSCR1O15162 318 aa18.17■□□□□ 0.5
NSMCE1-201ENST00000361439 DOT1LQ8TEK3 1739 aa18.17■□□□□ 0.5
NSMCE1-201ENST00000361439 SCN11AQ9UI33 1791 aa18.17■□□□□ 0.5
NSMCE1-201ENST00000361439 HMGB2P26583 209 aaKnown RBP18.16■□□□□ 0.5
NSMCE1-201ENST00000361439 TEFQ10587 303 aa18.16■□□□□ 0.5
NSMCE1-201ENST00000361439 TOGARAM1Q9Y4F4 1720 aa18.15■□□□□ 0.5
NSMCE1-201ENST00000361439 CALD1Q05682 793 aaKnown RBP18.15■□□□□ 0.5
NSMCE1-201ENST00000361439 NFATC2IPQ8NCF5 419 aa18.15■□□□□ 0.5
NSMCE1-201ENST00000361439 PIGBQ92521 554 aa18.15■□□□□ 0.5
NSMCE1-201ENST00000361439 SMARCC1Q92922 1105 aaPredicted RBP18.15■□□□□ 0.5
NSMCE1-201ENST00000361439 APBA3O96018 575 aa18.14■□□□□ 0.49
NSMCE1-201ENST00000361439 BAG6P46379 1132 aa18.14■□□□□ 0.49
NSMCE1-201ENST00000361439 NEUROD2Q15784 382 aa18.14■□□□□ 0.49
NSMCE1-201ENST00000361439 MCM10Q7L590 875 aa18.14■□□□□ 0.49
NSMCE1-201ENST00000361439 BABAM1Q9NWV8 329 aa18.14■□□□□ 0.49
NSMCE1-201ENST00000361439 TRIM35Q9UPQ4 493 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms