RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 TRMT2AQ8IZ69 625 aaKnown RBP16.53■□□□□ 0.24
COL18A1-201ENST00000342220 DDX54Q8TDD1 881 aaKnown RBP16.53■□□□□ 0.24
COL18A1-201ENST00000342220 LGR6Q9HBX8 967 aa16.52■□□□□ 0.24
COL18A1-201ENST00000342220 ZNF330Q9Y3S2 320 aaPredicted RBP16.52■□□□□ 0.24
COL18A1-201ENST00000342220 CDC42BPGQ6DT37 1551 aa16.52■□□□□ 0.24
COL18A1-201ENST00000342220 NPHP3Q7Z494 1330 aa16.52■□□□□ 0.23
COL18A1-201ENST00000342220 TRIM27P14373 513 aa16.52■□□□□ 0.23
COL18A1-201ENST00000342220 BRINP3Q76B58 766 aa16.52■□□□□ 0.23
COL18A1-201ENST00000342220 IP6K1Q92551 441 aa16.52■□□□□ 0.23
COL18A1-201ENST00000342220 DAXXQ9UER7 740 aaPredicted RBP16.52■□□□□ 0.23
COL18A1-201ENST00000342220 XRN1Q8IZH2 1706 aaKnown RBP16.51■□□□□ 0.23
COL18A1-201ENST00000342220 SBNO1A3KN83 1393 aa16.51■□□□□ 0.23
COL18A1-201ENST00000342220 TMEM57Q8N5G2 664 aa16.51■□□□□ 0.23
COL18A1-201ENST00000342220 GAS2L2Q8NHY3 880 aa16.51■□□□□ 0.23
COL18A1-201ENST00000342220 GNAT3A8MTJ3 354 aa16.51■□□□□ 0.23
COL18A1-201ENST00000342220 PNPLA6Q8IY17 1366 aa16.5■□□□□ 0.23
COL18A1-201ENST00000342220 SLC4A2P04920 1241 aa16.5■□□□□ 0.23
COL18A1-201ENST00000342220 SLC4A3P48751 1232 aa16.5■□□□□ 0.23
COL18A1-201ENST00000342220 DDRGK1Q96HY6 314 aa16.5■□□□□ 0.23
COL18A1-201ENST00000342220 F6X3S4 739 aa16.5■□□□□ 0.23
COL18A1-201ENST00000342220 AEBP2Q6ZN18 517 aaPredicted RBP16.5■□□□□ 0.23
COL18A1-201ENST00000342220 CCDC27Q2M243 656 aa16.49■□□□□ 0.23
COL18A1-201ENST00000342220 AATKQ6ZMQ8 1374 aa16.49■□□□□ 0.23
COL18A1-201ENST00000342220 AKAP12Q02952 1782 aa16.49■□□□□ 0.23
COL18A1-201ENST00000342220 KAT6BQ8WYB5 2073 aa16.49■□□□□ 0.23
COL18A1-201ENST00000342220 CFAP44Q96MT7 982 aa16.49■□□□□ 0.23
COL18A1-201ENST00000342220 RGPD8O14715 1765 aaPredicted RBP16.49■□□□□ 0.23
COL18A1-201ENST00000342220 KIF20BQ96Q89 1820 aa16.49■□□□□ 0.23
COL18A1-201ENST00000342220 C8orf34Q49A92 452 aa16.48■□□□□ 0.23
COL18A1-201ENST00000342220 SHPRHQ149N8 1683 aa16.48■□□□□ 0.23
COL18A1-201ENST00000342220 MAP2P11137 1827 aaKnown RBP16.48■□□□□ 0.23
COL18A1-201ENST00000342220 IPO8O15397 1037 aaKnown RBP16.48■□□□□ 0.23
COL18A1-201ENST00000342220 IGHDP01880 384 aa16.48■□□□□ 0.23
COL18A1-201ENST00000342220 PIP4K2AP48426 406 aaPredicted RBP16.48■□□□□ 0.23
COL18A1-201ENST00000342220 SLC39A6Q13433 755 aa16.48■□□□□ 0.23
COL18A1-201ENST00000342220 FAM161AQ3B820 660 aa16.48■□□□□ 0.23
COL18A1-201ENST00000342220 ATF7IPQ6VMQ6 1270 aa16.47■□□□□ 0.23
COL18A1-201ENST00000342220 OVOS2A0A0J9YW53 1432 aa16.47■□□□□ 0.23
COL18A1-201ENST00000342220 OVOS2Q6IE36 1432 aa16.47■□□□□ 0.23
COL18A1-201ENST00000342220 MON2Q7Z3U7 1717 aa16.47■□□□□ 0.23
COL18A1-201ENST00000342220 SYTL4Q96C24 671 aaPredicted RBP16.47■□□□□ 0.23
COL18A1-201ENST00000342220 KCNQ3O43525 872 aa16.47■□□□□ 0.23
COL18A1-201ENST00000342220 ARHGEF25Q86VW2 580 aa16.47■□□□□ 0.23
COL18A1-201ENST00000342220 VAMP4O75379 141 aa16.46■□□□□ 0.23
COL18A1-201ENST00000342220 IFT57Q9NWB7 429 aa16.46■□□□□ 0.23
COL18A1-201ENST00000342220 C1orf167Q5SNV9 1468 aa16.46■□□□□ 0.23
COL18A1-201ENST00000342220 AIMP1Q12904 312 aaKnown RBP16.46■□□□□ 0.23
COL18A1-201ENST00000342220 STK31Q9BXU1 1019 aa16.46■□□□□ 0.23
COL18A1-201ENST00000342220 FKBP5Q13451 457 aaPredicted RBP16.46■□□□□ 0.22
COL18A1-201ENST00000342220 IL17REQ8NFR9 667 aa16.46■□□□□ 0.22
COL18A1-201ENST00000342220 LRRC7Q96NW7 1537 aa16.45■□□□□ 0.22
COL18A1-201ENST00000342220 PLEKHO1Q53GL0 409 aaPredicted RBP16.45■□□□□ 0.22
COL18A1-201ENST00000342220 PCDHB15Q9Y5E8 787 aa16.45■□□□□ 0.22
COL18A1-201ENST00000342220 PHF23Q9BUL5 403 aaPredicted RBP16.44■□□□□ 0.22
COL18A1-201ENST00000342220 NRKQ7Z2Y5 1582 aa16.44■□□□□ 0.22
COL18A1-201ENST00000342220 KIAA0232Q92628 1395 aa16.44■□□□□ 0.22
COL18A1-201ENST00000342220 ANKARQ7Z5J8 1434 aa16.43■□□□□ 0.22
COL18A1-201ENST00000342220 BTBD11A6QL63 1104 aa16.43■□□□□ 0.22
COL18A1-201ENST00000342220 LMTK3Q96Q04 1460 aa16.43■□□□□ 0.22
COL18A1-201ENST00000342220 COL3A1P02461 1466 aaPredicted RBP16.42■□□□□ 0.22
COL18A1-201ENST00000342220 CDK12Q9NYV4 1490 aaPredicted RBP16.42■□□□□ 0.22
COL18A1-201ENST00000342220 TATP17735 454 aaPredicted RBP16.42■□□□□ 0.22
COL18A1-201ENST00000342220 GSE1Q14687 1217 aa16.42■□□□□ 0.22
COL18A1-201ENST00000342220 G2E3Q7L622 706 aa16.42■□□□□ 0.22
COL18A1-201ENST00000342220 PDE3AQ14432 1141 aa16.42■□□□□ 0.22
COL18A1-201ENST00000342220 MVPQ14764 893 aaKnown RBP16.42■□□□□ 0.22
COL18A1-201ENST00000342220 HDGFL1Q5TGJ6 251 aa16.41■□□□□ 0.22
COL18A1-201ENST00000342220 IGSF1Q8N6C5 1336 aa16.41■□□□□ 0.22
COL18A1-201ENST00000342220 PTCD1O75127 700 aaKnown RBP16.4■□□□□ 0.22
COL18A1-201ENST00000342220 CHD2O14647 1828 aaKnown RBP16.4■□□□□ 0.22
COL18A1-201ENST00000342220 USP31Q70CQ4 1352 aa16.4■□□□□ 0.22
COL18A1-201ENST00000342220 A0A0U1RQG5 324 aaPredicted RBP16.4■□□□□ 0.22
COL18A1-201ENST00000342220 UBAP1LF5GYI3 381 aa16.4■□□□□ 0.22
COL18A1-201ENST00000342220 MYL6BP14649 208 aa16.4■□□□□ 0.22
COL18A1-201ENST00000342220 TAF7Q15545 349 aaPredicted RBP16.4■□□□□ 0.22
COL18A1-201ENST00000342220 KIF16BQ96L93 1317 aa16.39■□□□□ 0.22
COL18A1-201ENST00000342220 ITSN1Q15811 1721 aa16.39■□□□□ 0.21
COL18A1-201ENST00000342220 USP54Q70EL1 1684 aa16.39■□□□□ 0.21
COL18A1-201ENST00000342220 PRAMEF22A3QJZ6 481 aa16.39■□□□□ 0.21
COL18A1-201ENST00000342220 NFATC2IPQ8NCF5 419 aa16.39■□□□□ 0.21
COL18A1-201ENST00000342220 LNPKQ9C0E8 428 aa16.38■□□□□ 0.21
COL18A1-201ENST00000342220 BTG4Q9NY30 223 aa16.38■□□□□ 0.21
COL18A1-201ENST00000342220 SSH2Q76I76 1423 aa16.38■□□□□ 0.21
COL18A1-201ENST00000342220 NFKBIBQ15653 356 aa16.38■□□□□ 0.21
COL18A1-201ENST00000342220 DDX19BQ9UMR2 479 aa16.37■□□□□ 0.21
COL18A1-201ENST00000342220 CHL1O00533 1208 aa16.37■□□□□ 0.21
COL18A1-201ENST00000342220 LARP1Q6PKG0 1096 aaKnown RBP16.37■□□□□ 0.21
COL18A1-201ENST00000342220 MRPL50Q8N5N7 158 aaKnown RBP16.37■□□□□ 0.21
COL18A1-201ENST00000342220 IL16Q14005 1332 aa16.36■□□□□ 0.21
COL18A1-201ENST00000342220 RWDD1Q9H446 243 aaPredicted RBP16.36■□□□□ 0.21
COL18A1-201ENST00000342220 ERBB3P21860 1342 aa16.36■□□□□ 0.21
COL18A1-201ENST00000342220 PHAXQ9H814 394 aaKnown RBP16.36■□□□□ 0.21
COL18A1-201ENST00000342220 SPATA31A3Q5VYP0 1347 aa16.35■□□□□ 0.21
COL18A1-201ENST00000342220 ANKRD45Q5TZF3 282 aa16.35■□□□□ 0.21
COL18A1-201ENST00000342220 IQSEC2Q5JU85 1478 aa16.35■□□□□ 0.21
COL18A1-201ENST00000342220 NALCNQ8IZF0 1738 aa16.35■□□□□ 0.21
COL18A1-201ENST00000342220 NWD1Q149M9 1564 aa16.34■□□□□ 0.21
COL18A1-201ENST00000342220 MST1RQ04912 1400 aa16.34■□□□□ 0.21
COL18A1-201ENST00000342220 TTC5Q8N0Z6 440 aa16.34■□□□□ 0.21
COL18A1-201ENST00000342220 JARID2Q92833 1246 aaPredicted RBP16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms