RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 LMO7Q8WWI1 1683 aa22.59■■□□□ 1.21
CLDN4-201ENST00000340958 CSB-PGBD3P0DP91 1061 aa22.58■■□□□ 1.21
CLDN4-201ENST00000340958 CALD1Q05682 793 aaKnown RBP22.58■■□□□ 1.21
CLDN4-201ENST00000340958 KDRP35968 1356 aa22.58■■□□□ 1.2
CLDN4-201ENST00000340958 RBM6P78332 1123 aaKnown RBP22.57■■□□□ 1.2
CLDN4-201ENST00000340958 NBPF6Q5VWK0 638 aa22.57■■□□□ 1.2
CLDN4-201ENST00000340958 NBPF4Q96M43 638 aa22.57■■□□□ 1.2
CLDN4-201ENST00000340958 TRMT2AQ8IZ69 625 aaKnown RBP22.57■■□□□ 1.2
CLDN4-201ENST00000340958 GLI3P10071 1580 aa22.55■■□□□ 1.2
CLDN4-201ENST00000340958 CAMTA1Q9Y6Y1 1673 aa22.55■■□□□ 1.2
CLDN4-201ENST00000340958 GAS2L2Q8NHY3 880 aa22.54■■□□□ 1.2
CLDN4-201ENST00000340958 LAS1LQ9Y4W2 734 aaKnown RBP22.54■■□□□ 1.2
CLDN4-201ENST00000340958 COL18A1P39060 1754 aa22.54■■□□□ 1.2
CLDN4-201ENST00000340958 IRX6P78412 446 aaPredicted RBP22.54■■□□□ 1.2
CLDN4-201ENST00000340958 ERBB3P21860 1342 aa22.53■■□□□ 1.2
CLDN4-201ENST00000340958 RTF1Q92541 710 aaKnown RBP22.53■■□□□ 1.2
CLDN4-201ENST00000340958 GJD4Q96KN9 370 aaPredicted RBP22.53■■□□□ 1.2
CLDN4-201ENST00000340958 NLRP2Q9NX02 1062 aa22.53■■□□□ 1.2
CLDN4-201ENST00000340958 RGS12O14924 1447 aa22.53■■□□□ 1.2
CLDN4-201ENST00000340958 IL16Q14005 1332 aa22.53■■□□□ 1.2
CLDN4-201ENST00000340958 VPS72Q15906 364 aa22.52■■□□□ 1.2
CLDN4-201ENST00000340958 MTHFSDQ2M296 383 aaKnown RBP22.52■■□□□ 1.2
CLDN4-201ENST00000340958 RGPD5Q99666 1765 aa22.52■■□□□ 1.2
CLDN4-201ENST00000340958 THUMPD2Q9BTF0 503 aaKnown RBP22.51■■□□□ 1.19
CLDN4-201ENST00000340958 CCDC9Q9Y3X0 531 aaKnown RBP22.5■■□□□ 1.19
CLDN4-201ENST00000340958 DCTN1Q14203 1278 aa22.49■■□□□ 1.19
CLDN4-201ENST00000340958 TSR2Q969E8 191 aaKnown RBP22.49■■□□□ 1.19
CLDN4-201ENST00000340958 STRN4Q9NRL3 753 aa22.49■■□□□ 1.19
CLDN4-201ENST00000340958 FANCIQ9NVI1 1328 aa22.48■■□□□ 1.19
CLDN4-201ENST00000340958 COL5A2P05997 1499 aaPredicted RBP22.48■■□□□ 1.19
CLDN4-201ENST00000340958 ABCC6O95255 1503 aa22.47■■□□□ 1.19
CLDN4-201ENST00000340958 SOCS7O14512 581 aa22.47■■□□□ 1.19
CLDN4-201ENST00000340958 GNAI1P63096 354 aa22.47■■□□□ 1.19
CLDN4-201ENST00000340958 MCM10Q7L590 875 aa22.47■■□□□ 1.19
CLDN4-201ENST00000340958 RRP1P56182 461 aaKnown RBP22.46■■□□□ 1.19
CLDN4-201ENST00000340958 EVA1CP58658 441 aa22.46■■□□□ 1.19
CLDN4-201ENST00000340958 PLEKHO1Q53GL0 409 aaPredicted RBP22.46■■□□□ 1.19
CLDN4-201ENST00000340958 RAPGEF4Q8WZA2 1011 aa22.45■■□□□ 1.19
CLDN4-201ENST00000340958 IFT57Q9NWB7 429 aa22.45■■□□□ 1.19
CLDN4-201ENST00000340958 GNAT3A8MTJ3 354 aa22.45■■□□□ 1.18
CLDN4-201ENST00000340958 SPATA31A5Q5VU36 1347 aa22.45■■□□□ 1.18
CLDN4-201ENST00000340958 SPATA31A7Q8IWB4 1347 aa22.45■■□□□ 1.18
CLDN4-201ENST00000340958 DLG5Q8TDM6 1919 aa22.44■■□□□ 1.18
CLDN4-201ENST00000340958 RGPD2P0DJD1 1756 aa22.44■■□□□ 1.18
CLDN4-201ENST00000340958 AMOTQ4VCS5 1084 aa22.44■■□□□ 1.18
CLDN4-201ENST00000340958 RNF123Q5XPI4 1314 aa22.43■■□□□ 1.18
CLDN4-201ENST00000340958 LARP1Q6PKG0 1096 aaKnown RBP22.43■■□□□ 1.18
CLDN4-201ENST00000340958 TOM1L2Q6ZVM7 507 aa22.43■■□□□ 1.18
CLDN4-201ENST00000340958 BRWD3Q6RI45 1802 aa22.43■■□□□ 1.18
CLDN4-201ENST00000340958 HTATSF1O43719 755 aaKnown RBP22.43■■□□□ 1.18
CLDN4-201ENST00000340958 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.43■■□□□ 1.18
CLDN4-201ENST00000340958 TATP17735 454 aaPredicted RBP22.42■■□□□ 1.18
CLDN4-201ENST00000340958 EXOSC9Q06265 439 aaKnown RBP22.42■■□□□ 1.18
CLDN4-201ENST00000340958 CFAP44Q96MT7 982 aa22.42■■□□□ 1.18
CLDN4-201ENST00000340958 MAP3K5Q99683 1374 aa22.41■■□□□ 1.18
CLDN4-201ENST00000340958 SPATA31A1Q5TZJ5 1347 aa22.41■■□□□ 1.18
CLDN4-201ENST00000340958 C1orf141Q5JVX7 400 aa22.41■■□□□ 1.18
CLDN4-201ENST00000340958 ZNF530Q6P9A1 599 aaPredicted RBP22.41■■□□□ 1.18
CLDN4-201ENST00000340958 EP400Q96L91 3159 aa22.4■■□□□ 1.18
CLDN4-201ENST00000340958 FAM98CQ17RN3 349 aaKnown RBP22.4■■□□□ 1.18
CLDN4-201ENST00000340958 USP35Q9P2H5 1018 aa22.4■■□□□ 1.18
CLDN4-201ENST00000340958 WDR17Q8IZU2 1322 aa22.39■■□□□ 1.18
CLDN4-201ENST00000340958 CRB1P82279 1406 aa22.38■■□□□ 1.17
CLDN4-201ENST00000340958 NCAPD2Q15021 1401 aa22.38■■□□□ 1.17
CLDN4-201ENST00000340958 PLIN1O60240 522 aa22.38■■□□□ 1.17
CLDN4-201ENST00000340958 CT47B1P0C2W7 299 aaPredicted RBP22.38■■□□□ 1.17
CLDN4-201ENST00000340958 CANXP27824 592 aaKnown RBP22.38■■□□□ 1.17
CLDN4-201ENST00000340958 MBIPQ9NS73 344 aa22.38■■□□□ 1.17
CLDN4-201ENST00000340958 THSD7AQ9UPZ6 1657 aa22.38■■□□□ 1.17
CLDN4-201ENST00000340958 ONECUT3O60422 494 aaPredicted RBP22.38■■□□□ 1.17
CLDN4-201ENST00000340958 SEPT12Q8IYM1 358 aa22.38■■□□□ 1.17
CLDN4-201ENST00000340958 ZNF853P0CG23 659 aa22.37■■□□□ 1.17
CLDN4-201ENST00000340958 AKAP4Q5JQC9 854 aa22.37■■□□□ 1.17
CLDN4-201ENST00000340958 FAM208AQ9UK61 1670 aaKnown RBP22.37■■□□□ 1.17
CLDN4-201ENST00000340958 BCAR3O75815 825 aa22.36■■□□□ 1.17
CLDN4-201ENST00000340958 ERICH6BQ5W0A0 696 aa22.36■■□□□ 1.17
CLDN4-201ENST00000340958 SPG7Q9UQ90 795 aa22.36■■□□□ 1.17
CLDN4-201ENST00000340958 A0A0G2JS52 829 aa22.35■■□□□ 1.17
CLDN4-201ENST00000340958 MYT1Q01538 1121 aa22.35■■□□□ 1.17
CLDN4-201ENST00000340958 WNK3Q9BYP7 1800 aa22.34■■□□□ 1.17
CLDN4-201ENST00000340958 RARSP54136 660 aaKnown RBP22.34■■□□□ 1.17
CLDN4-201ENST00000340958 TSPYL4Q9UJ04 414 aa22.34■■□□□ 1.17
CLDN4-201ENST00000340958 CHL1O00533 1208 aa22.33■■□□□ 1.16
CLDN4-201ENST00000340958 FRAT1Q92837 279 aaPredicted RBP22.33■■□□□ 1.16
CLDN4-201ENST00000340958 BCL2L13Q9BXK5 485 aa22.33■■□□□ 1.16
CLDN4-201ENST00000340958 IL17REQ8NFR9 667 aa22.32■■□□□ 1.16
CLDN4-201ENST00000340958 CARD10Q9BWT7 1032 aa22.32■■□□□ 1.16
CLDN4-201ENST00000340958 ELL2O00472 640 aaPredicted RBP22.31■■□□□ 1.16
CLDN4-201ENST00000340958 SMC4Q9NTJ3 1288 aa22.31■■□□□ 1.16
CLDN4-201ENST00000340958 MIS18AQ9NYP9 233 aa22.31■■□□□ 1.16
CLDN4-201ENST00000340958 MPRIPQ6WCQ1 1025 aa22.31■■□□□ 1.16
CLDN4-201ENST00000340958 BARGINQ6ZT62 677 aa22.31■■□□□ 1.16
CLDN4-201ENST00000340958 TEFQ10587 303 aa22.3■■□□□ 1.16
CLDN4-201ENST00000340958 THRAP3Q9Y2W1 955 aaKnown RBP22.3■■□□□ 1.16
CLDN4-201ENST00000340958 TAF7Q15545 349 aaPredicted RBP22.29■■□□□ 1.16
CLDN4-201ENST00000340958 TWISTNBQ3B726 338 aaPredicted RBP22.29■■□□□ 1.16
CLDN4-201ENST00000340958 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.29■■□□□ 1.16
CLDN4-201ENST00000340958 PARP4Q9UKK3 1724 aaKnown RBP22.29■■□□□ 1.16
CLDN4-201ENST00000340958 MEGF6O75095 1541 aa22.29■■□□□ 1.16
CLDN4-201ENST00000340958 LGR6Q9HBX8 967 aa22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms