RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 DDIT3P35638 169 aa4.9□□□□□ -1.62
NEDD4-201ENST00000338963 CRYMQ14894 314 aa4.9□□□□□ -1.62
NEDD4-201ENST00000338963 PRPF40AO75400 957 aaKnown RBP4.9□□□□□ -1.63
NEDD4-201ENST00000338963 ERLIN1O75477 346 aa4.9□□□□□ -1.63
NEDD4-201ENST00000338963 SH3BGRP55822 239 aaPredicted RBP4.9□□□□□ -1.63
NEDD4-201ENST00000338963 IQCGQ9H095 443 aaKnown RBP4.9□□□□□ -1.63
NEDD4-201ENST00000338963 GCFC2P16383 781 aaKnown RBP4.9□□□□□ -1.63
NEDD4-201ENST00000338963 MAGEA8P43361 318 aa4.9□□□□□ -1.63
NEDD4-201ENST00000338963 HDGFL1Q5TGJ6 251 aa4.9□□□□□ -1.63
NEDD4-201ENST00000338963 PLEKHG2Q9H7P9 1386 aa4.9□□□□□ -1.63
NEDD4-201ENST00000338963 FAM50AQ14320 339 aaKnown RBP4.89□□□□□ -1.63
NEDD4-201ENST00000338963 TEX11Q8IYF3 940 aa4.89□□□□□ -1.63
NEDD4-201ENST00000338963 KIAA1524Q8TCG1 905 aa4.89□□□□□ -1.63
NEDD4-201ENST00000338963 TRIM6Q9C030 488 aaPredicted RBP4.89□□□□□ -1.63
NEDD4-201ENST00000338963 GBP3Q9H0R5 595 aa4.89□□□□□ -1.63
NEDD4-201ENST00000338963 HOMER3Q9NSC5 361 aa4.89□□□□□ -1.63
NEDD4-201ENST00000338963 FAM53CQ9NYF3 392 aa4.89□□□□□ -1.63
NEDD4-201ENST00000338963 IRF6O14896 467 aa4.89□□□□□ -1.63
NEDD4-201ENST00000338963 PPFIA2O75334 1257 aa4.89□□□□□ -1.63
NEDD4-201ENST00000338963 ARMCX6Q7L4S7 300 aa4.89□□□□□ -1.63
NEDD4-201ENST00000338963 SDCCAG8Q86SQ7 713 aaPredicted RBP4.89□□□□□ -1.63
NEDD4-201ENST00000338963 SNRNP27Q8WVK2 155 aaKnown RBP4.89□□□□□ -1.63
NEDD4-201ENST00000338963 CHCHD3Q9NX63 227 aaKnown RBP4.89□□□□□ -1.63
NEDD4-201ENST00000338963 SMC3Q9UQE7 1217 aa4.89□□□□□ -1.63
NEDD4-201ENST00000338963 ATP6V1DQ9Y5K8 247 aa4.89□□□□□ -1.63
NEDD4-201ENST00000338963 SCRIBQ14160 1630 aa4.89□□□□□ -1.63
NEDD4-201ENST00000338963 TNNT1P13805 278 aa4.89□□□□□ -1.63
NEDD4-201ENST00000338963 MAP9Q49MG5 647 aa4.89□□□□□ -1.63
NEDD4-201ENST00000338963 CHMP4CQ96CF2 233 aa4.89□□□□□ -1.63
NEDD4-201ENST00000338963 CCDC96Q2M329 555 aa4.89□□□□□ -1.63
NEDD4-201ENST00000338963 ROCK1Q13464 1354 aa4.89□□□□□ -1.63
NEDD4-201ENST00000338963 PTPRCP08575 1304 aa4.89□□□□□ -1.63
NEDD4-201ENST00000338963 SLMAPQ14BN4 828 aa4.89□□□□□ -1.63
NEDD4-201ENST00000338963 TRERF1Q96PN7 1200 aa4.89□□□□□ -1.63
NEDD4-201ENST00000338963 ZNF692Q9BU19 519 aaPredicted RBP4.89□□□□□ -1.63
NEDD4-201ENST00000338963 IFT57Q9NWB7 429 aa4.89□□□□□ -1.63
NEDD4-201ENST00000338963 ABCD1P33897 745 aa4.89□□□□□ -1.63
NEDD4-201ENST00000338963 MICALCLQ6ZW33 695 aa4.89□□□□□ -1.63
NEDD4-201ENST00000338963 BATF3Q9NR55 127 aa4.89□□□□□ -1.63
NEDD4-201ENST00000338963 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP4.88□□□□□ -1.63
NEDD4-201ENST00000338963 CDKL5O76039 1030 aa4.88□□□□□ -1.63
NEDD4-201ENST00000338963 NBPF8Q3BBV2 869 aa4.88□□□□□ -1.63
NEDD4-201ENST00000338963 ARMC2Q8NEN0 867 aa4.88□□□□□ -1.63
NEDD4-201ENST00000338963 ST18O60284 1047 aa4.88□□□□□ -1.63
NEDD4-201ENST00000338963 MCM2P49736 904 aa4.88□□□□□ -1.63
NEDD4-201ENST00000338963 EPB41L2O43491 1005 aaKnown RBP4.88□□□□□ -1.63
NEDD4-201ENST00000338963 RPS6KA5O75582 802 aa4.88□□□□□ -1.63
NEDD4-201ENST00000338963 TRHP20396 242 aaPredicted RBP4.88□□□□□ -1.63
NEDD4-201ENST00000338963 TPD52L1Q16890 204 aaPredicted RBP4.88□□□□□ -1.63
NEDD4-201ENST00000338963 CRACR2AQ9BSW2 395 aa4.88□□□□□ -1.63
NEDD4-201ENST00000338963 THUMPD2Q9BTF0 503 aaKnown RBP4.88□□□□□ -1.63
NEDD4-201ENST00000338963 SPAG9O60271 1321 aaKnown RBP4.88□□□□□ -1.63
NEDD4-201ENST00000338963 ANKRD33BA6NCL7 494 aa4.88□□□□□ -1.63
NEDD4-201ENST00000338963 RLBP1P12271 317 aa4.88□□□□□ -1.63
NEDD4-201ENST00000338963 PEX19P40855 299 aa4.88□□□□□ -1.63
NEDD4-201ENST00000338963 SPRYD3Q8NCJ5 442 aa4.88□□□□□ -1.63
NEDD4-201ENST00000338963 NEBLO76041 1014 aa4.88□□□□□ -1.63
NEDD4-201ENST00000338963 CDR1P51861 262 aa4.88□□□□□ -1.63
NEDD4-201ENST00000338963 DBN1Q16643 649 aa4.88□□□□□ -1.63
NEDD4-201ENST00000338963 TMTC2Q8N394 836 aa4.88□□□□□ -1.63
NEDD4-201ENST00000338963 GBP7Q8N8V2 638 aaPredicted RBP4.88□□□□□ -1.63
NEDD4-201ENST00000338963 ITGB1BP2Q9UKP3 347 aa4.88□□□□□ -1.63
NEDD4-201ENST00000338963 RAD54L2Q9Y4B4 1467 aa4.88□□□□□ -1.63
NEDD4-201ENST00000338963 CCDC189A1A4V9 331 aa4.87□□□□□ -1.63
NEDD4-201ENST00000338963 ELF1P32519 619 aa4.87□□□□□ -1.63
NEDD4-201ENST00000338963 WDR43Q15061 677 aaKnown RBP eCLIP4.87□□□□□ -1.63
NEDD4-201ENST00000338963 CCDC184Q52MB2 194 aa4.87□□□□□ -1.63
NEDD4-201ENST00000338963 MCTP1Q6DN14 999 aa4.87□□□□□ -1.63
NEDD4-201ENST00000338963 KLHL10Q6JEL2 608 aa4.87□□□□□ -1.63
NEDD4-201ENST00000338963 TADA2BQ86TJ2 420 aa4.87□□□□□ -1.63
NEDD4-201ENST00000338963 WDR78Q5VTH9 848 aa4.87□□□□□ -1.63
NEDD4-201ENST00000338963 IRAK4Q9NWZ3 460 aa4.87□□□□□ -1.63
NEDD4-201ENST00000338963 CORO7P57737 925 aa4.87□□□□□ -1.63
NEDD4-201ENST00000338963 CEP135Q66GS9 1140 aa4.87□□□□□ -1.63
NEDD4-201ENST00000338963 CEP112Q8N8E3 955 aa4.87□□□□□ -1.63
NEDD4-201ENST00000338963 BICD2Q8TD16 824 aa4.87□□□□□ -1.63
NEDD4-201ENST00000338963 ABCF2Q9UG63 623 aa4.87□□□□□ -1.63
NEDD4-201ENST00000338963 CD151P48509 253 aa4.87□□□□□ -1.63
NEDD4-201ENST00000338963 SFSWAPQ12872 951 aaKnown RBP4.87□□□□□ -1.63
NEDD4-201ENST00000338963 UBXN4Q92575 508 aa4.87□□□□□ -1.63
NEDD4-201ENST00000338963 PRIM1P49642 420 aaKnown RBP4.87□□□□□ -1.63
NEDD4-201ENST00000338963 RSRC1Q96IZ7 334 aaKnown RBP4.87□□□□□ -1.63
NEDD4-201ENST00000338963 UTP6Q9NYH9 597 aaKnown RBP4.87□□□□□ -1.63
NEDD4-201ENST00000338963 WDR63Q8IWG1 891 aa4.87□□□□□ -1.63
NEDD4-201ENST00000338963 CEP126Q9P2H0 1117 aa4.87□□□□□ -1.63
NEDD4-201ENST00000338963 CAMSAP2Q08AD1 1489 aa4.87□□□□□ -1.63
NEDD4-201ENST00000338963 PTPN14Q15678 1187 aa4.86□□□□□ -1.63
NEDD4-201ENST00000338963 CCDC183Q5T5S1 534 aa4.86□□□□□ -1.63
NEDD4-201ENST00000338963 FAM114A1Q8IWE2 563 aa4.86□□□□□ -1.63
NEDD4-201ENST00000338963 MICALL1Q8N3F8 863 aa4.86□□□□□ -1.63
NEDD4-201ENST00000338963 CCDC34Q96HJ3 373 aa4.86□□□□□ -1.63
NEDD4-201ENST00000338963 CFAP53Q96M91 514 aa4.86□□□□□ -1.63
NEDD4-201ENST00000338963 KIF2CQ99661 725 aa4.86□□□□□ -1.63
NEDD4-201ENST00000338963 CHUKO15111 745 aa4.86□□□□□ -1.63
NEDD4-201ENST00000338963 ERLIN2O94905 339 aa4.86□□□□□ -1.63
NEDD4-201ENST00000338963 SNUPNO95149 360 aaKnown RBP4.86□□□□□ -1.63
NEDD4-201ENST00000338963 ADCY5O95622 1261 aa4.86□□□□□ -1.63
NEDD4-201ENST00000338963 TMX1Q9H3N1 280 aa4.86□□□□□ -1.63
NEDD4-201ENST00000338963 SWAP70Q9UH65 585 aa4.86□□□□□ -1.63
NEDD4-201ENST00000338963 KINO60870 393 aaKnown RBP4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms