RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 METP08581 1390 aa8.38□□□□□ -1.07
SF3B1-201ENST00000335508 PTCD1O75127 700 aaKnown RBP8.37□□□□□ -1.07
SF3B1-201ENST00000335508 ADAMTS2O95450 1211 aa8.37□□□□□ -1.07
SF3B1-201ENST00000335508 CHRNA2Q15822 529 aa8.37□□□□□ -1.07
SF3B1-201ENST00000335508 LINS1Q8NG48 757 aa8.37□□□□□ -1.07
SF3B1-201ENST00000335508 ADCY10Q96PN6 1610 aa8.37□□□□□ -1.07
SF3B1-201ENST00000335508 PHF23Q9BUL5 403 aaPredicted RBP8.37□□□□□ -1.07
SF3B1-201ENST00000335508 CDC45O75419 566 aa8.37□□□□□ -1.07
SF3B1-201ENST00000335508 NOL10Q9BSC4 688 aaKnown RBP8.37□□□□□ -1.07
SF3B1-201ENST00000335508 MSH5O43196 834 aa8.37□□□□□ -1.07
SF3B1-201ENST00000335508 DDB1Q16531 1140 aa8.37□□□□□ -1.07
SF3B1-201ENST00000335508 NOB1Q9ULX3 412 aaKnown RBP8.37□□□□□ -1.07
SF3B1-201ENST00000335508 SRGAP3O43295 1099 aa8.37□□□□□ -1.07
SF3B1-201ENST00000335508 LMTK3Q96Q04 1460 aa8.36□□□□□ -1.07
SF3B1-201ENST00000335508 TRDNQ13061 729 aa8.36□□□□□ -1.07
SF3B1-201ENST00000335508 MPRIPQ6WCQ1 1025 aa8.36□□□□□ -1.07
SF3B1-201ENST00000335508 A2ML1A8K2U0 1454 aa8.36□□□□□ -1.07
SF3B1-201ENST00000335508 CDK11BP21127 795 aaKnown RBP8.36□□□□□ -1.07
SF3B1-201ENST00000335508 VPS37DQ86XT2 251 aa8.36□□□□□ -1.07
SF3B1-201ENST00000335508 IPO9Q96P70 1041 aaKnown RBP8.36□□□□□ -1.07
SF3B1-201ENST00000335508 ANO2Q9NQ90 1003 aa8.36□□□□□ -1.07
SF3B1-201ENST00000335508 HOXC9P31274 260 aa8.36□□□□□ -1.07
SF3B1-201ENST00000335508 MCM2P49736 904 aa8.36□□□□□ -1.07
SF3B1-201ENST00000335508 GNL3LQ9NVN8 582 aaKnown RBP8.36□□□□□ -1.07
SF3B1-201ENST00000335508 TBC1D2BQ9UPU7 963 aa8.36□□□□□ -1.07
SF3B1-201ENST00000335508 CCDC57Q2TAC2 916 aa8.36□□□□□ -1.07
SF3B1-201ENST00000335508 AMOTL1Q8IY63 956 aa8.36□□□□□ -1.07
SF3B1-201ENST00000335508 RILPL2Q969X0 211 aa8.36□□□□□ -1.07
SF3B1-201ENST00000335508 KIF1BPQ96EK5 621 aa8.36□□□□□ -1.07
SF3B1-201ENST00000335508 GCC2Q8IWJ2 1684 aa8.35□□□□□ -1.07
SF3B1-201ENST00000335508 UGGT1Q9NYU2 1555 aa8.35□□□□□ -1.07
SF3B1-201ENST00000335508 NRDCO43847 1150 aa8.35□□□□□ -1.07
SF3B1-201ENST00000335508 PDIA4P13667 645 aaKnown RBP8.35□□□□□ -1.07
SF3B1-201ENST00000335508 ERBB4Q15303 1308 aa8.35□□□□□ -1.07
SF3B1-201ENST00000335508 NAP1L2Q9ULW6 460 aaPredicted RBP8.35□□□□□ -1.07
SF3B1-201ENST00000335508 IL13P35225 146 aa8.35□□□□□ -1.07
SF3B1-201ENST00000335508 MPHOSPH8Q99549 860 aa8.35□□□□□ -1.07
SF3B1-201ENST00000335508 LRRCC1Q9C099 1032 aa8.35□□□□□ -1.07
SF3B1-201ENST00000335508 ANKARQ7Z5J8 1434 aa8.34□□□□□ -1.07
SF3B1-201ENST00000335508 CHL1O00533 1208 aa8.34□□□□□ -1.07
SF3B1-201ENST00000335508 GLRX3O76003 335 aaKnown RBP8.34□□□□□ -1.07
SF3B1-201ENST00000335508 NEUROD6Q96NK8 337 aa8.34□□□□□ -1.07
SF3B1-201ENST00000335508 MBIPQ9NS73 344 aa8.34□□□□□ -1.07
SF3B1-201ENST00000335508 DCTN1Q14203 1278 aa8.34□□□□□ -1.07
SF3B1-201ENST00000335508 AEBP1Q8IUX7 1158 aa8.34□□□□□ -1.07
SF3B1-201ENST00000335508 TRIM27P14373 513 aa8.34□□□□□ -1.07
SF3B1-201ENST00000335508 DDX21Q9NR30 783 aaKnown RBP eCLIP8.34□□□□□ -1.07
SF3B1-201ENST00000335508 A0A087WZG4 1122 aa8.34□□□□□ -1.07
SF3B1-201ENST00000335508 ARHGEF25Q86VW2 580 aa8.34□□□□□ -1.07
SF3B1-201ENST00000335508 RAB11FIP3O75154 756 aa8.34□□□□□ -1.08
SF3B1-201ENST00000335508 TMEM57Q8N5G2 664 aa8.34□□□□□ -1.08
SF3B1-201ENST00000335508 ROBO2Q9HCK4 1378 aa8.33□□□□□ -1.08
SF3B1-201ENST00000335508 PDZRN3Q9UPQ7 1066 aa8.33□□□□□ -1.08
SF3B1-201ENST00000335508 CSPP1Q1MSJ5 1256 aa8.33□□□□□ -1.08
SF3B1-201ENST00000335508 SYNE3Q6ZMZ3 975 aa8.33□□□□□ -1.08
SF3B1-201ENST00000335508 ANKRD13DQ6ZTN6 518 aa8.33□□□□□ -1.08
SF3B1-201ENST00000335508 CNTROBQ8N137 903 aa8.33□□□□□ -1.08
SF3B1-201ENST00000335508 GLI2P10070 1586 aa8.33□□□□□ -1.08
SF3B1-201ENST00000335508 ATP7BP35670 1465 aa8.33□□□□□ -1.08
SF3B1-201ENST00000335508 DHX37Q8IY37 1157 aaKnown RBP8.33□□□□□ -1.08
SF3B1-201ENST00000335508 RSPH6AQ9H0K4 717 aa8.33□□□□□ -1.08
SF3B1-201ENST00000335508 VAMP4O75379 141 aa8.32□□□□□ -1.08
SF3B1-201ENST00000335508 RALYLQ86SE5 291 aaKnown RBP8.32□□□□□ -1.08
SF3B1-201ENST00000335508 SYAP1Q96A49 352 aaPredicted RBP8.32□□□□□ -1.08
SF3B1-201ENST00000335508 PHACTR3Q96KR7 559 aa8.32□□□□□ -1.08
SF3B1-201ENST00000335508 TOMM22Q9NS69 142 aa8.32□□□□□ -1.08
SF3B1-201ENST00000335508 MTHFSDQ2M296 383 aaKnown RBP8.32□□□□□ -1.08
SF3B1-201ENST00000335508 CCDC158Q5M9N0 1113 aa8.32□□□□□ -1.08
SF3B1-201ENST00000335508 USHBP1Q8N6Y0 703 aa8.32□□□□□ -1.08
SF3B1-201ENST00000335508 TSHZ2Q9NRE2 1034 aa8.32□□□□□ -1.08
SF3B1-201ENST00000335508 AKAP2Q9Y2D5 859 aa8.32□□□□□ -1.08
SF3B1-201ENST00000335508 PI4KAP2A4QPH2 592 aa8.32□□□□□ -1.08
SF3B1-201ENST00000335508 ZSCAN25Q6NSZ9 544 aa8.32□□□□□ -1.08
SF3B1-201ENST00000335508 KSR2Q6VAB6 950 aa8.32□□□□□ -1.08
SF3B1-201ENST00000335508 PI4KAP1Q8N8J0 262 aa8.32□□□□□ -1.08
SF3B1-201ENST00000335508 ZRANB1Q9UGI0 708 aa8.32□□□□□ -1.08
SF3B1-201ENST00000335508 RTL1A6NKG5 1358 aa8.31□□□□□ -1.08
SF3B1-201ENST00000335508 PCDH11XQ9BZA7 1347 aa8.31□□□□□ -1.08
SF3B1-201ENST00000335508 PCDH11YQ9BZA8 1340 aa8.31□□□□□ -1.08
SF3B1-201ENST00000335508 PDCP20941 246 aa8.31□□□□□ -1.08
SF3B1-201ENST00000335508 MAP3K5Q99683 1374 aa8.31□□□□□ -1.08
SF3B1-201ENST00000335508 FSD1Q9BTV5 496 aa8.31□□□□□ -1.08
SF3B1-201ENST00000335508 PRR36Q9H6K5 1346 aa8.31□□□□□ -1.08
SF3B1-201ENST00000335508 GNL2Q13823 731 aaKnown RBP8.31□□□□□ -1.08
SF3B1-201ENST00000335508 RABEP1Q15276 862 aa8.31□□□□□ -1.08
SF3B1-201ENST00000335508 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.3□□□□□ -1.085e-7■■□□□ 11.8
SF3B1-201ENST00000335508 TET3O43151 1660 aa8.3□□□□□ -1.08
SF3B1-201ENST00000335508 KIAA0232Q92628 1395 aa8.3□□□□□ -1.08
SF3B1-201ENST00000335508 CPLX1O14810 134 aa8.3□□□□□ -1.08
SF3B1-201ENST00000335508 PSMA5P28066 241 aa8.3□□□□□ -1.08
SF3B1-201ENST00000335508 C22orf23Q9BZE7 217 aa8.3□□□□□ -1.08
SF3B1-201ENST00000335508 CNNM1Q9NRU3 951 aa8.3□□□□□ -1.08
SF3B1-201ENST00000335508 IFIT1P09914 478 aaKnown RBP8.3□□□□□ -1.08
SF3B1-201ENST00000335508 FBLN1P23142 703 aa8.3□□□□□ -1.08
SF3B1-201ENST00000335508 IGHMBP2P38935 993 aaKnown RBP8.3□□□□□ -1.08
SF3B1-201ENST00000335508 HDAC1Q13547 482 aaPredicted RBP8.3□□□□□ -1.08
SF3B1-201ENST00000335508 CHD1LQ86WJ1 897 aa8.3□□□□□ -1.08
SF3B1-201ENST00000335508 ADGRL3Q9HAR2 1447 aa8.3□□□□□ -1.08
SF3B1-201ENST00000335508 CTNNA3Q9UI47 895 aa8.3□□□□□ -1.08
SF3B1-201ENST00000335508 USP6P35125 1406 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms