RNA–Protein interactions for RNA: ENST00000334060.8

SHOX-201, Transcript of short stature homeobox, humanhuman

TSL 5 BASIC

Gene SHOX, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-201ENST00000334060 HNRNPUQ00839 825 aaKnown RBP eCLIP21.9■■□□□ 1.1
SHOX-201ENST00000334060 DCTN1Q14203 1278 aa21.9■■□□□ 1.1
SHOX-201ENST00000334060 POTEAQ6S8J7 498 aa21.9■■□□□ 1.1
SHOX-201ENST00000334060 THUMPD2Q9BTF0 503 aaKnown RBP21.9■■□□□ 1.1
SHOX-201ENST00000334060 WNK3Q9BYP7 1800 aa21.9■■□□□ 1.1
SHOX-201ENST00000334060 SHANK3Q9BYB0 1731 aa21.89■■□□□ 1.1
SHOX-201ENST00000334060 OVOS2A0A0G2JMS6 1433 aa21.88■■□□□ 1.09
SHOX-201ENST00000334060 IL2RBP14784 551 aa21.88■■□□□ 1.09
SHOX-201ENST00000334060 GJD4Q96KN9 370 aaPredicted RBP21.88■■□□□ 1.09
SHOX-201ENST00000334060 RAPGEF4Q8WZA2 1011 aa21.87■■□□□ 1.09
SHOX-201ENST00000334060 DLG5Q8TDM6 1919 aa21.87■■□□□ 1.09
SHOX-201ENST00000334060 TMPOP42166 694 aaKnown RBP21.87■■□□□ 1.09
SHOX-201ENST00000334060 CYP27B1O15528 508 aa21.86■■□□□ 1.09
SHOX-201ENST00000334060 FAM182BQ5T319 152 aa21.86■■□□□ 1.09
SHOX-201ENST00000334060 MAPK8IP3Q9UPT6 1336 aa21.85■■□□□ 1.09
SHOX-201ENST00000334060 TATP17735 454 aaPredicted RBP21.85■■□□□ 1.09
SHOX-201ENST00000334060 TRPC5Q9UL62 973 aaPredicted RBP21.85■■□□□ 1.09
SHOX-201ENST00000334060 LRRC37A3O60309 1634 aa21.85■■□□□ 1.09
SHOX-201ENST00000334060 TRIM35Q9UPQ4 493 aa21.85■■□□□ 1.09
SHOX-201ENST00000334060 PKD1L3Q7Z443 1732 aa21.84■■□□□ 1.09
SHOX-201ENST00000334060 PARP4Q9UKK3 1724 aaKnown RBP21.83■■□□□ 1.09
SHOX-201ENST00000334060 MCM10Q7L590 875 aa21.83■■□□□ 1.09
SHOX-201ENST00000334060 DDX54Q8TDD1 881 aaKnown RBP21.83■■□□□ 1.09
SHOX-201ENST00000334060 RIPK4P57078 832 aa21.83■■□□□ 1.08
SHOX-201ENST00000334060 NFE2L2Q16236 605 aa21.83■■□□□ 1.08
SHOX-201ENST00000334060 ZNF530Q6P9A1 599 aaPredicted RBP21.83■■□□□ 1.08
SHOX-201ENST00000334060 A0A0G2JS52 829 aa21.82■■□□□ 1.08
SHOX-201ENST00000334060 LGR6Q9HBX8 967 aa21.82■■□□□ 1.08
SHOX-201ENST00000334060 SPINK5Q9NQ38 1064 aaPredicted RBP21.82■■□□□ 1.08
SHOX-201ENST00000334060 THSD7AQ9UPZ6 1657 aa21.81■■□□□ 1.08
SHOX-201ENST00000334060 MPRIPQ6WCQ1 1025 aa21.81■■□□□ 1.08
SHOX-201ENST00000334060 BARGINQ6ZT62 677 aa21.8■■□□□ 1.08
SHOX-201ENST00000334060 ZCRB1Q8TBF4 217 aaKnown RBP21.8■■□□□ 1.08
SHOX-201ENST00000334060 PHF23Q9BUL5 403 aaPredicted RBP21.8■■□□□ 1.08
SHOX-201ENST00000334060 CDCA7LQ96GN5 454 aa21.79■■□□□ 1.08
SHOX-201ENST00000334060 KDM6AO15550 1401 aaPredicted RBP21.78■■□□□ 1.08
SHOX-201ENST00000334060 PHKG2P15735 406 aa21.78■■□□□ 1.08
SHOX-201ENST00000334060 PLEKHO1Q53GL0 409 aaPredicted RBP21.78■■□□□ 1.08
SHOX-201ENST00000334060 ZNF772Q68DY9 489 aaPredicted RBP21.78■■□□□ 1.08
SHOX-201ENST00000334060 IL17REQ8NFR9 667 aa21.78■■□□□ 1.08
SHOX-201ENST00000334060 SEPT12Q8IYM1 358 aa21.78■■□□□ 1.08
SHOX-201ENST00000334060 MARCH10Q8NA82 808 aaPredicted RBP21.78■■□□□ 1.08
SHOX-201ENST00000334060 THRAP3Q9Y2W1 955 aaKnown RBP21.78■■□□□ 1.08
SHOX-201ENST00000334060 TNS2Q63HR2 1409 aa21.77■■□□□ 1.08
SHOX-201ENST00000334060 WWC1Q8IX03 1113 aa21.77■■□□□ 1.08
SHOX-201ENST00000334060 ZNF521Q96K83 1311 aa21.76■■□□□ 1.07
SHOX-201ENST00000334060 DDB1Q16531 1140 aa21.76■■□□□ 1.07
SHOX-201ENST00000334060 MAP3K5Q99683 1374 aa21.75■■□□□ 1.07
SHOX-201ENST00000334060 TOGARAM1Q9Y4F4 1720 aa21.75■■□□□ 1.07
SHOX-201ENST00000334060 BRWD3Q6RI45 1802 aa21.75■■□□□ 1.07
SHOX-201ENST00000334060 PTF1AQ7RTS3 328 aa21.74■■□□□ 1.07
SHOX-201ENST00000334060 GAS2L2Q8NHY3 880 aa21.74■■□□□ 1.07
SHOX-201ENST00000334060 SPG7Q9UQ90 795 aa21.74■■□□□ 1.07
SHOX-201ENST00000334060 RGS12O14924 1447 aa21.74■■□□□ 1.07
SHOX-201ENST00000334060 EXOC5O00471 708 aa21.74■■□□□ 1.07
SHOX-201ENST00000334060 ONECUT3O60422 494 aaPredicted RBP21.74■■□□□ 1.07
SHOX-201ENST00000334060 AMOTQ4VCS5 1084 aa21.74■■□□□ 1.07
SHOX-201ENST00000334060 MIS18AQ9NYP9 233 aa21.74■■□□□ 1.07
SHOX-201ENST00000334060 PNNQ9H307 717 aaKnown RBP21.73■■□□□ 1.07
SHOX-201ENST00000334060 VIRMAQ69YN4 1812 aaKnown RBP21.73■■□□□ 1.07
SHOX-201ENST00000334060 PCDH11XQ9BZA7 1347 aa21.72■■□□□ 1.07
SHOX-201ENST00000334060 PCDH11YQ9BZA8 1340 aa21.72■■□□□ 1.07
SHOX-201ENST00000334060 GNAT3A8MTJ3 354 aa21.72■■□□□ 1.07
SHOX-201ENST00000334060 NEFMP07197 916 aa21.72■■□□□ 1.07
SHOX-201ENST00000334060 RBM6P78332 1123 aaKnown RBP21.72■■□□□ 1.07
SHOX-201ENST00000334060 AKAP4Q5JQC9 854 aa21.72■■□□□ 1.07
SHOX-201ENST00000334060 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.71■■□□□ 1.07
SHOX-201ENST00000334060 RXRBP28702 533 aa21.7■■□□□ 1.07
SHOX-201ENST00000334060 C1orf141Q5JVX7 400 aa21.7■■□□□ 1.07
SHOX-201ENST00000334060 IFNL2Q8IZJ0 200 aa21.7■■□□□ 1.07
SHOX-201ENST00000334060 ACSBG1Q96GR2 724 aa21.7■■□□□ 1.07
SHOX-201ENST00000334060 RNMTO43148 476 aaKnown RBP21.7■■□□□ 1.06
SHOX-201ENST00000334060 ZBED9Q6R2W3 1325 aa21.69■■□□□ 1.06
SHOX-201ENST00000334060 TSR2Q969E8 191 aaKnown RBP21.68■■□□□ 1.06
SHOX-201ENST00000334060 ADAMTS7Q9UKP4 1686 aa21.68■■□□□ 1.06
SHOX-201ENST00000334060 LAS1LQ9Y4W2 734 aaKnown RBP21.68■■□□□ 1.06
SHOX-201ENST00000334060 KCNQ2O43526 872 aa21.67■■□□□ 1.06
SHOX-201ENST00000334060 CEMIPQ8WUJ3 1361 aa21.67■■□□□ 1.06
SHOX-201ENST00000334060 KCNQ3O43525 872 aa21.67■■□□□ 1.06
SHOX-201ENST00000334060 CDCA7Q9BWT1 371 aaPredicted RBP21.67■■□□□ 1.06
SHOX-201ENST00000334060 SCN11AQ9UI33 1791 aa21.67■■□□□ 1.06
SHOX-201ENST00000334060 DOT1LQ8TEK3 1739 aa21.66■■□□□ 1.06
SHOX-201ENST00000334060 CCDC27Q2M243 656 aa21.66■■□□□ 1.06
SHOX-201ENST00000334060 KRT24Q2M2I5 525 aa21.65■■□□□ 1.06
SHOX-201ENST00000334060 RTF1Q92541 710 aaKnown RBP21.65■■□□□ 1.06
SHOX-201ENST00000334060 NKX1-1Q15270 411 aaPredicted RBP21.65■■□□□ 1.06
SHOX-201ENST00000334060 NFATC2IPQ8NCF5 419 aa21.65■■□□□ 1.06
SHOX-201ENST00000334060 PDE3BQ13370 1112 aa21.64■■□□□ 1.05
SHOX-201ENST00000334060 SLC39A6Q13433 755 aa21.63■■□□□ 1.05
SHOX-201ENST00000334060 DCAF5Q96JK2 942 aa21.63■■□□□ 1.05
SHOX-201ENST00000334060 PRIM1P49642 420 aaKnown RBP21.62■■□□□ 1.05
SHOX-201ENST00000334060 SYTL4Q96C24 671 aaPredicted RBP21.62■■□□□ 1.05
SHOX-201ENST00000334060 KAT6BQ8WYB5 2073 aa21.61■■□□□ 1.05
SHOX-201ENST00000334060 SIPA1L3O60292 1781 aaPredicted RBP21.61■■□□□ 1.05
SHOX-201ENST00000334060 KRT27Q7Z3Y8 459 aa21.61■■□□□ 1.05
SHOX-201ENST00000334060 MBIPQ9NS73 344 aa21.61■■□□□ 1.05
SHOX-201ENST00000334060 PLEKHG2Q9H7P9 1386 aa21.6■■□□□ 1.05
SHOX-201ENST00000334060 SLC52A2Q9HAB3 445 aa21.6■■□□□ 1.05
SHOX-201ENST00000334060 ITGB4P16144 1822 aa21.6■■□□□ 1.05
SHOX-201ENST00000334060 MRC1P22897 1456 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms