RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 KIF3AQ9Y496 699 aa16.36■□□□□ 0.21
CCDC88C-201ENST00000331194 FYB1O15117 783 aa16.36■□□□□ 0.21
CCDC88C-201ENST00000331194 MBD3O95983 291 aa16.36■□□□□ 0.21
CCDC88C-201ENST00000331194 KRT24Q2M2I5 525 aa16.36■□□□□ 0.21
CCDC88C-201ENST00000331194 INO80Q9ULG1 1556 aaPredicted RBP16.36■□□□□ 0.21
CCDC88C-201ENST00000331194 HCLS1P14317 486 aaPredicted RBP16.36■□□□□ 0.21
CCDC88C-201ENST00000331194 C14orf93Q9H972 538 aaKnown RBP16.36■□□□□ 0.21
CCDC88C-201ENST00000331194 ANKRD36BQ8N2N9 1353 aa16.36■□□□□ 0.21
CCDC88C-201ENST00000331194 BRD1O95696 1058 aa16.35■□□□□ 0.21
CCDC88C-201ENST00000331194 SRPK2P78362 688 aaKnown RBP16.35■□□□□ 0.21
CCDC88C-201ENST00000331194 IDI1Q13907 227 aa16.35■□□□□ 0.21
CCDC88C-201ENST00000331194 USP48Q86UV5 1035 aa16.35■□□□□ 0.21
CCDC88C-201ENST00000331194 MBIPQ9NS73 344 aa16.35■□□□□ 0.21
CCDC88C-201ENST00000331194 PALD1Q9ULE6 856 aa16.35■□□□□ 0.21
CCDC88C-201ENST00000331194 ABCC4O15439 1325 aa16.35■□□□□ 0.21
CCDC88C-201ENST00000331194 QRICH2Q9H0J4 1663 aa16.35■□□□□ 0.21
CCDC88C-201ENST00000331194 A0A1W2PP64 1363 aa16.34■□□□□ 0.21
CCDC88C-201ENST00000331194 MYOM2P54296 1465 aa16.34■□□□□ 0.21
CCDC88C-201ENST00000331194 PPRC1Q5VV67 1664 aaKnown RBP16.34■□□□□ 0.21
CCDC88C-201ENST00000331194 PRIMPOLQ96LW4 560 aa16.34■□□□□ 0.21
CCDC88C-201ENST00000331194 EVC2Q86UK5 1308 aa16.34■□□□□ 0.21
CCDC88C-201ENST00000331194 NPATQ14207 1427 aa16.34■□□□□ 0.21
CCDC88C-201ENST00000331194 ARAP3Q8WWN8 1544 aa16.34■□□□□ 0.21
CCDC88C-201ENST00000331194 TWISTNBQ3B726 338 aaPredicted RBP16.34■□□□□ 0.21
CCDC88C-201ENST00000331194 FAM83GA6ND36 823 aa16.33■□□□□ 0.21
CCDC88C-201ENST00000331194 VGLL3A8MV65 326 aa16.33■□□□□ 0.21
CCDC88C-201ENST00000331194 HMGN5P82970 282 aaKnown RBP16.33■□□□□ 0.21
CCDC88C-201ENST00000331194 STAG3Q9UJ98 1225 aa16.33■□□□□ 0.21
CCDC88C-201ENST00000331194 DCTN1Q14203 1278 aa16.33■□□□□ 0.2
CCDC88C-201ENST00000331194 UPF3BQ9BZI7 483 aaKnown RBP16.33■□□□□ 0.2
CCDC88C-201ENST00000331194 TCHHQ07283 1943 aa16.33■□□□□ 0.2
CCDC88C-201ENST00000331194 PDCL2Q8N4E4 241 aa16.32■□□□□ 0.2
CCDC88C-201ENST00000331194 MROH2AA6NES4 1674 aa16.32■□□□□ 0.2
CCDC88C-201ENST00000331194 ARHGAP45Q92619 1136 aa16.32■□□□□ 0.2
CCDC88C-201ENST00000331194 PYCARDQ9ULZ3 195 aa16.32■□□□□ 0.2
CCDC88C-201ENST00000331194 COL3A1P02461 1466 aaPredicted RBP16.32■□□□□ 0.2
CCDC88C-201ENST00000331194 RIOK3O14730 519 aaKnown RBP16.32■□□□□ 0.2
CCDC88C-201ENST00000331194 GTF2F1P35269 517 aaKnown RBP eCLIP16.32■□□□□ 0.2
CCDC88C-201ENST00000331194 SPC24Q8NBT2 197 aa16.32■□□□□ 0.2
CCDC88C-201ENST00000331194 MYO3AQ8NEV4 1616 aa16.31■□□□□ 0.2
CCDC88C-201ENST00000331194 ERC2O15083 957 aa16.31■□□□□ 0.2
CCDC88C-201ENST00000331194 AP5Z1O43299 807 aa16.31■□□□□ 0.2
CCDC88C-201ENST00000331194 BRPF1P55201 1214 aaPredicted RBP16.31■□□□□ 0.2
CCDC88C-201ENST00000331194 CASC1Q6TDU7 716 aa16.31■□□□□ 0.2
CCDC88C-201ENST00000331194 PLCD3Q8N3E9 789 aa16.31■□□□□ 0.2
CCDC88C-201ENST00000331194 LARP6Q9BRS8 491 aaKnown RBP16.31■□□□□ 0.2
CCDC88C-201ENST00000331194 KNDC1Q76NI1 1749 aa16.31■□□□□ 0.2
CCDC88C-201ENST00000331194 ZBTB22O15209 634 aa16.31■□□□□ 0.2
CCDC88C-201ENST00000331194 GTPBP4Q9BZE4 634 aaKnown RBP16.31■□□□□ 0.2
CCDC88C-201ENST00000331194 FRMPD1Q5SYB0 1578 aa16.31■□□□□ 0.2
CCDC88C-201ENST00000331194 REC8O95072 547 aa16.3■□□□□ 0.2
CCDC88C-201ENST00000331194 FKBP5Q13451 457 aaPredicted RBP16.3■□□□□ 0.2
CCDC88C-201ENST00000331194 PAXIP1Q6ZW49 1069 aaPredicted RBP16.3■□□□□ 0.2
CCDC88C-201ENST00000331194 PTCH1Q13635 1447 aa16.3■□□□□ 0.2
CCDC88C-201ENST00000331194 PIK3R4Q99570 1358 aa16.3■□□□□ 0.2
CCDC88C-201ENST00000331194 TET3O43151 1660 aa16.3■□□□□ 0.2
CCDC88C-201ENST00000331194 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.29■□□□□ 0.2
CCDC88C-201ENST00000331194 MROH1Q8NDA8 1641 aa16.29■□□□□ 0.2
CCDC88C-201ENST00000331194 KCNF1Q9H3M0 494 aa16.29■□□□□ 0.2
CCDC88C-201ENST00000331194 CNPY2Q9Y2B0 182 aa16.29■□□□□ 0.2
CCDC88C-201ENST00000331194 CEP85Q6P2H3 762 aa16.28■□□□□ 0.2
CCDC88C-201ENST00000331194 SYAP1Q96A49 352 aaPredicted RBP16.28■□□□□ 0.2
CCDC88C-201ENST00000331194 NSD2O96028 1365 aa16.28■□□□□ 0.2
CCDC88C-201ENST00000331194 FCHSD2O94868 740 aa16.28■□□□□ 0.2
CCDC88C-201ENST00000331194 ANKRD44Q8N8A2 993 aa16.28■□□□□ 0.2
CCDC88C-201ENST00000331194 KIF1BO60333 1816 aa16.28■□□□□ 0.2
CCDC88C-201ENST00000331194 TULP4Q9NRJ4 1543 aa16.28■□□□□ 0.2
CCDC88C-201ENST00000331194 MINK1Q8N4C8 1332 aaPredicted RBP16.28■□□□□ 0.2
CCDC88C-201ENST00000331194 NAA30Q147X3 362 aaPredicted RBP16.28■□□□□ 0.2
CCDC88C-201ENST00000331194 MEIS3Q99687 375 aa16.28■□□□□ 0.2
CCDC88C-201ENST00000331194 SPTLC3Q9NUV7 552 aa16.28■□□□□ 0.2
CCDC88C-201ENST00000331194 TAF7LQ5H9L4 462 aa16.27■□□□□ 0.2
CCDC88C-201ENST00000331194 GIMAP6Q6P9H5 292 aa16.27■□□□□ 0.2
CCDC88C-201ENST00000331194 CEBPAP49715 358 aaPredicted RBP16.27■□□□□ 0.19
CCDC88C-201ENST00000331194 NFE2L2Q16236 605 aa16.27■□□□□ 0.19
CCDC88C-201ENST00000331194 MLH3Q9UHC1 1453 aa16.27■□□□□ 0.19
CCDC88C-201ENST00000331194 KIF20AO95235 890 aa16.26■□□□□ 0.19
CCDC88C-201ENST00000331194 API5Q9BZZ5 524 aaKnown RBP16.26■□□□□ 0.19
CCDC88C-201ENST00000331194 NRXN1Q9ULB1 1477 aa16.26■□□□□ 0.19
CCDC88C-201ENST00000331194 HECW2Q9P2P5 1572 aa16.26■□□□□ 0.19
CCDC88C-201ENST00000331194 USP32Q8NFA0 1604 aa16.26■□□□□ 0.19
CCDC88C-201ENST00000331194 ZC3H13Q5T200 1668 aaKnown RBP16.26■□□□□ 0.19
CCDC88C-201ENST00000331194 ZNF428Q96B54 188 aa16.25■□□□□ 0.19
CCDC88C-201ENST00000331194 ANO2Q9NQ90 1003 aa16.25■□□□□ 0.19
CCDC88C-201ENST00000331194 KDM4AO75164 1064 aa16.25■□□□□ 0.19
CCDC88C-201ENST00000331194 LETM1O95202 739 aaPredicted RBP16.25■□□□□ 0.19
CCDC88C-201ENST00000331194 GNAI1P63096 354 aa16.25■□□□□ 0.19
CCDC88C-201ENST00000331194 CUL4AQ13619 759 aa16.25■□□□□ 0.19
CCDC88C-201ENST00000331194 SRCIN1Q9C0H9 1055 aa16.25■□□□□ 0.19
CCDC88C-201ENST00000331194 CGNQ9P2M7 1197 aaKnown RBP16.25■□□□□ 0.19
CCDC88C-201ENST00000331194 ADGRB1O14514 1584 aa16.25■□□□□ 0.19
CCDC88C-201ENST00000331194 KIAA1524Q8TCG1 905 aa16.25■□□□□ 0.19
CCDC88C-201ENST00000331194 LRRC7Q96NW7 1537 aa16.24■□□□□ 0.19
CCDC88C-201ENST00000331194 NEO1Q92859 1461 aa16.24■□□□□ 0.19
CCDC88C-201ENST00000331194 IFT172Q9UG01 1749 aa16.24■□□□□ 0.19
CCDC88C-201ENST00000331194 PHF14O94880 888 aa16.23■□□□□ 0.19
CCDC88C-201ENST00000331194 PDE1AP54750 535 aa16.23■□□□□ 0.19
CCDC88C-201ENST00000331194 ZNF771Q7L3S4 317 aaPredicted RBP16.23■□□□□ 0.19
CCDC88C-201ENST00000331194 RILPL2Q969X0 211 aa16.23■□□□□ 0.19
CCDC88C-201ENST00000331194 ATP10DQ9P241 1426 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms