RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 OVOS2A0A0G2JMS6 1433 aa22.07■■□□□ 1.12
PDLIM1-201ENST00000329399 KCNQ2O43526 872 aa22.07■■□□□ 1.12
PDLIM1-201ENST00000329399 YTHDC1Q96MU7 727 aaKnown RBP22.07■■□□□ 1.12
PDLIM1-201ENST00000329399 APBA3O96018 575 aa22.06■■□□□ 1.12
PDLIM1-201ENST00000329399 MTHFSP49914 203 aa22.06■■□□□ 1.12
PDLIM1-201ENST00000329399 SMG6Q86US8 1419 aaKnown RBP22.06■■□□□ 1.12
PDLIM1-201ENST00000329399 EZH2Q15910 746 aaKnown RBP22.04■■□□□ 1.12
PDLIM1-201ENST00000329399 ZCRB1Q8TBF4 217 aaKnown RBP22.04■■□□□ 1.12
PDLIM1-201ENST00000329399 ACSBG1Q96GR2 724 aa22.04■■□□□ 1.12
PDLIM1-201ENST00000329399 CAMKK2Q96RR4 588 aa22.04■■□□□ 1.12
PDLIM1-201ENST00000329399 TNS1Q9HBL0 1735 aaKnown RBP22.04■■□□□ 1.12
PDLIM1-201ENST00000329399 MRS2Q9HD23 443 aa22.04■■□□□ 1.12
PDLIM1-201ENST00000329399 BAG6P46379 1132 aa22.03■■□□□ 1.12
PDLIM1-201ENST00000329399 NCAPD2Q15021 1401 aa22.03■■□□□ 1.12
PDLIM1-201ENST00000329399 BCL9O00512 1426 aa22.02■■□□□ 1.12
PDLIM1-201ENST00000329399 SBF2Q86WG5 1849 aa22.02■■□□□ 1.12
PDLIM1-201ENST00000329399 RAPGEF4Q8WZA2 1011 aa22.02■■□□□ 1.12
PDLIM1-201ENST00000329399 IL13P35225 146 aa22.01■■□□□ 1.11
PDLIM1-201ENST00000329399 BCL11BQ9C0K0 894 aaPredicted RBP22.01■■□□□ 1.11
PDLIM1-201ENST00000329399 RGPD1P0DJD0 1748 aa22■■□□□ 1.11
PDLIM1-201ENST00000329399 TATP17735 454 aaPredicted RBP22■■□□□ 1.11
PDLIM1-201ENST00000329399 AEBP1Q8IUX7 1158 aa21.99■■□□□ 1.11
PDLIM1-201ENST00000329399 IGSF1Q8N6C5 1336 aa21.98■■□□□ 1.11
PDLIM1-201ENST00000329399 KAT6BQ8WYB5 2073 aa21.98■■□□□ 1.11
PDLIM1-201ENST00000329399 CYP27B1O15528 508 aa21.98■■□□□ 1.11
PDLIM1-201ENST00000329399 SHANK3Q9BYB0 1731 aa21.98■■□□□ 1.11
PDLIM1-201ENST00000329399 PROM2Q8N271 834 aa21.97■■□□□ 1.11
PDLIM1-201ENST00000329399 PRIM1P49642 420 aaKnown RBP21.94■■□□□ 1.1
PDLIM1-201ENST00000329399 PLSCR1O15162 318 aa21.92■■□□□ 1.1
PDLIM1-201ENST00000329399 PPP2R1AP30153 589 aa21.92■■□□□ 1.1
PDLIM1-201ENST00000329399 SULT6B1Q6IMI4 303 aa21.92■■□□□ 1.1
PDLIM1-201ENST00000329399 PSDA5PKW4 1024 aaPredicted RBP21.9■■□□□ 1.1
PDLIM1-201ENST00000329399 PNISRQ8TF01 805 aaKnown RBP21.9■■□□□ 1.1
PDLIM1-201ENST00000329399 COL3A1P02461 1466 aaPredicted RBP21.89■■□□□ 1.1
PDLIM1-201ENST00000329399 PCDH11XQ9BZA7 1347 aa21.89■■□□□ 1.1
PDLIM1-201ENST00000329399 PCDH11YQ9BZA8 1340 aa21.89■■□□□ 1.1
PDLIM1-201ENST00000329399 DIAPH1O60610 1272 aaKnown RBP21.89■■□□□ 1.09
PDLIM1-201ENST00000329399 HMOX1P09601 288 aa21.89■■□□□ 1.09
PDLIM1-201ENST00000329399 SYTL4Q96C24 671 aaPredicted RBP21.89■■□□□ 1.09
PDLIM1-201ENST00000329399 CCDC184Q52MB2 194 aa21.88■■□□□ 1.09
PDLIM1-201ENST00000329399 SPG7Q9UQ90 795 aa21.88■■□□□ 1.09
PDLIM1-201ENST00000329399 NHSQ6T4R5 1651 aa21.87■■□□□ 1.09
PDLIM1-201ENST00000329399 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.87■■□□□ 1.092e-7■□□□□ 9.4
PDLIM1-201ENST00000329399 PKD1L3Q7Z443 1732 aa21.86■■□□□ 1.09
PDLIM1-201ENST00000329399 PHKG2P15735 406 aa21.86■■□□□ 1.09
PDLIM1-201ENST00000329399 KDRP35968 1356 aa21.86■■□□□ 1.09
PDLIM1-201ENST00000329399 R3HDM1Q15032 1099 aaKnown RBP21.85■■□□□ 1.09
PDLIM1-201ENST00000329399 NKX1-1Q15270 411 aaPredicted RBP21.85■■□□□ 1.09
PDLIM1-201ENST00000329399 TXNRD1Q16881 649 aa21.85■■□□□ 1.09
PDLIM1-201ENST00000329399 FAM9BQ8IZU0 186 aa21.85■■□□□ 1.09
PDLIM1-201ENST00000329399 KCNQ4P56696 695 aa21.84■■□□□ 1.09
PDLIM1-201ENST00000329399 BTAF1O14981 1849 aa21.84■■□□□ 1.09
PDLIM1-201ENST00000329399 ANO8Q9HCE9 1232 aaPredicted RBP21.83■■□□□ 1.09
PDLIM1-201ENST00000329399 LRRC4BQ9NT99 713 aa21.83■■□□□ 1.09
PDLIM1-201ENST00000329399 DOT1LQ8TEK3 1739 aa21.83■■□□□ 1.09
PDLIM1-201ENST00000329399 RREB1Q92766 1687 aa21.83■■□□□ 1.08
PDLIM1-201ENST00000329399 U2SURPO15042 1029 aaKnown RBP21.82■■□□□ 1.08
PDLIM1-201ENST00000329399 HNRNPUQ00839 825 aaKnown RBP eCLIP21.82■■□□□ 1.08
PDLIM1-201ENST00000329399 PLEKHO1Q53GL0 409 aaPredicted RBP21.82■■□□□ 1.08
PDLIM1-201ENST00000329399 MPRIPQ6WCQ1 1025 aa21.82■■□□□ 1.08
PDLIM1-201ENST00000329399 IFNL2Q8IZJ0 200 aa21.82■■□□□ 1.08
PDLIM1-201ENST00000329399 NUP188Q5SRE5 1749 aa21.81■■□□□ 1.08
PDLIM1-201ENST00000329399 PIGBQ92521 554 aa21.81■■□□□ 1.08
PDLIM1-201ENST00000329399 TOGARAM1Q9Y4F4 1720 aa21.81■■□□□ 1.08
PDLIM1-201ENST00000329399 ZNF530Q6P9A1 599 aaPredicted RBP21.8■■□□□ 1.08
PDLIM1-201ENST00000329399 ZBED9Q6R2W3 1325 aa21.78■■□□□ 1.08
PDLIM1-201ENST00000329399 AMOTQ4VCS5 1084 aa21.77■■□□□ 1.08
PDLIM1-201ENST00000329399 PDGFDQ9GZP0 370 aaPredicted RBP21.77■■□□□ 1.08
PDLIM1-201ENST00000329399 MTHFSDQ2M296 383 aaKnown RBP21.77■■□□□ 1.07
PDLIM1-201ENST00000329399 CFAP53Q96M91 514 aa21.76■■□□□ 1.07
PDLIM1-201ENST00000329399 RGPD3A6NKT7 1758 aaPredicted RBP21.76■■□□□ 1.07
PDLIM1-201ENST00000329399 RGPD4Q7Z3J3 1758 aa21.76■■□□□ 1.07
PDLIM1-201ENST00000329399 KDM6AO15550 1401 aaPredicted RBP21.76■■□□□ 1.07
PDLIM1-201ENST00000329399 PHACTR3Q96KR7 559 aa21.75■■□□□ 1.07
PDLIM1-201ENST00000329399 ITGB4P16144 1822 aa21.74■■□□□ 1.07
PDLIM1-201ENST00000329399 NBPF14Q5TI25 921 aa21.74■■□□□ 1.07
PDLIM1-201ENST00000329399 LGR6Q9HBX8 967 aa21.74■■□□□ 1.07
PDLIM1-201ENST00000329399 ASAP1Q9ULH1 1129 aa21.74■■□□□ 1.07
PDLIM1-201ENST00000329399 PLEKHG2Q9H7P9 1386 aa21.74■■□□□ 1.07
PDLIM1-201ENST00000329399 RSPH6AQ9H0K4 717 aa21.73■■□□□ 1.07
PDLIM1-201ENST00000329399 ZNF827Q17R98 1081 aa21.72■■□□□ 1.07
PDLIM1-201ENST00000329399 DCAF5Q96JK2 942 aa21.72■■□□□ 1.07
PDLIM1-201ENST00000329399 U2AF1L5P0DN76 240 aaPredicted RBP21.71■■□□□ 1.07
PDLIM1-201ENST00000329399 U2AF1Q01081 240 aaKnown RBP eCLIP21.71■■□□□ 1.07
PDLIM1-201ENST00000329399 WDR43Q15061 677 aaKnown RBP eCLIP21.71■■□□□ 1.07
PDLIM1-201ENST00000329399 PRKAR2BP31323 418 aa21.71■■□□□ 1.07
PDLIM1-201ENST00000329399 SLC15A2Q16348 729 aa21.71■■□□□ 1.07
PDLIM1-201ENST00000329399 C1orf141Q5JVX7 400 aa21.71■■□□□ 1.07
PDLIM1-201ENST00000329399 ATG3Q9NT62 314 aa21.71■■□□□ 1.07
PDLIM1-201ENST00000329399 TMOD3Q9NYL9 352 aa21.71■■□□□ 1.07
PDLIM1-201ENST00000329399 ERVV-2B6SEH9 535 aa21.7■■□□□ 1.06
PDLIM1-201ENST00000329399 PALLDQ8WX93 1383 aa21.69■■□□□ 1.06
PDLIM1-201ENST00000329399 AKAP4Q5JQC9 854 aa21.69■■□□□ 1.06
PDLIM1-201ENST00000329399 SLC27A3Q5K4L6 730 aa21.69■■□□□ 1.06
PDLIM1-201ENST00000329399 NGEFQ8N5V2 710 aa21.69■■□□□ 1.06
PDLIM1-201ENST00000329399 NFATC2IPQ8NCF5 419 aa21.69■■□□□ 1.06
PDLIM1-201ENST00000329399 CCNL1Q9UK58 526 aaPredicted RBP21.69■■□□□ 1.06
PDLIM1-201ENST00000329399 AKT1S1Q96B36 256 aa21.68■■□□□ 1.06
PDLIM1-201ENST00000329399 NUDCQ9Y266 331 aa21.68■■□□□ 1.06
PDLIM1-201ENST00000329399 LY75O60449 1722 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms