RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 DOT1LQ8TEK3 1739 aa22.01■■□□□ 1.11
HDDC2-201ENST00000318787 RGPD3A6NKT7 1758 aaPredicted RBP22.01■■□□□ 1.11
HDDC2-201ENST00000318787 RGPD4Q7Z3J3 1758 aa22.01■■□□□ 1.11
HDDC2-201ENST00000318787 CNGB1Q14028 1251 aaPredicted RBP22■■□□□ 1.11
HDDC2-201ENST00000318787 R3HDM1Q15032 1099 aaKnown RBP22■■□□□ 1.11
HDDC2-201ENST00000318787 MORC1Q86VD1 984 aa22■■□□□ 1.11
HDDC2-201ENST00000318787 RAPGEF4Q8WZA2 1011 aa22■■□□□ 1.11
HDDC2-201ENST00000318787 BTAF1O14981 1849 aa22■■□□□ 1.11
HDDC2-201ENST00000318787 KCNQ2O43526 872 aa21.99■■□□□ 1.11
HDDC2-201ENST00000318787 NSD2O96028 1365 aa21.99■■□□□ 1.11
HDDC2-201ENST00000318787 POLKQ9UBT6 870 aa21.99■■□□□ 1.11
HDDC2-201ENST00000318787 BCL9O00512 1426 aa21.98■■□□□ 1.11
HDDC2-201ENST00000318787 TATP17735 454 aaPredicted RBP21.98■■□□□ 1.11
HDDC2-201ENST00000318787 ZCRB1Q8TBF4 217 aaKnown RBP21.98■■□□□ 1.11
HDDC2-201ENST00000318787 SYTL4Q96C24 671 aaPredicted RBP21.97■■□□□ 1.11
HDDC2-201ENST00000318787 WASHC2AQ641Q2 1341 aa21.95■■□□□ 1.1
HDDC2-201ENST00000318787 NBPF14Q5TI25 921 aa21.95■■□□□ 1.1
HDDC2-201ENST00000318787 PLSCR1O15162 318 aa21.93■■□□□ 1.1
HDDC2-201ENST00000318787 CC2D1BQ5T0F9 858 aaKnown RBP21.92■■□□□ 1.1
HDDC2-201ENST00000318787 PPP4R3CPQ6ZMV5 832 aa21.92■■□□□ 1.1
HDDC2-201ENST00000318787 PKD1L3Q7Z443 1732 aa21.9■■□□□ 1.1
HDDC2-201ENST00000318787 EIF4A2Q14240 407 aaKnown RBP21.9■■□□□ 1.1
HDDC2-201ENST00000318787 EYA1Q99502 592 aa21.9■■□□□ 1.1
HDDC2-201ENST00000318787 PCDH11XQ9BZA7 1347 aa21.89■■□□□ 1.09
HDDC2-201ENST00000318787 PCDH11YQ9BZA8 1340 aa21.89■■□□□ 1.09
HDDC2-201ENST00000318787 TXNRD1Q16881 649 aa21.88■■□□□ 1.09
HDDC2-201ENST00000318787 AMER1Q5JTC6 1135 aaPredicted RBP21.88■■□□□ 1.09
HDDC2-201ENST00000318787 PRIM1P49642 420 aaKnown RBP21.87■■□□□ 1.09
HDDC2-201ENST00000318787 LRP5O75197 1615 aa21.86■■□□□ 1.09
HDDC2-201ENST00000318787 PROM2Q8N271 834 aa21.86■■□□□ 1.09
HDDC2-201ENST00000318787 ANO8Q9HCE9 1232 aaPredicted RBP21.85■■□□□ 1.09
HDDC2-201ENST00000318787 ITGB4P16144 1822 aa21.84■■□□□ 1.09
HDDC2-201ENST00000318787 SPG7Q9UQ90 795 aa21.84■■□□□ 1.09
HDDC2-201ENST00000318787 NCAPD2Q15021 1401 aa21.84■■□□□ 1.09
HDDC2-201ENST00000318787 TOGARAM1Q9Y4F4 1720 aa21.84■■□□□ 1.09
HDDC2-201ENST00000318787 PER1O15534 1290 aaPredicted RBP21.83■■□□□ 1.08
HDDC2-201ENST00000318787 STK32BQ9NY57 414 aa21.82■■□□□ 1.08
HDDC2-201ENST00000318787 CYP27B1O15528 508 aa21.81■■□□□ 1.08
HDDC2-201ENST00000318787 LY75O60449 1722 aa21.8■■□□□ 1.08
HDDC2-201ENST00000318787 MTHFSP49914 203 aa21.8■■□□□ 1.08
HDDC2-201ENST00000318787 IGSF1Q8N6C5 1336 aa21.8■■□□□ 1.08
HDDC2-201ENST00000318787 MPRIPQ6WCQ1 1025 aa21.79■■□□□ 1.08
HDDC2-201ENST00000318787 KCNQ4P56696 695 aa21.78■■□□□ 1.08
HDDC2-201ENST00000318787 CASZ1Q86V15 1759 aa21.77■■□□□ 1.08
HDDC2-201ENST00000318787 AEBP1Q8IUX7 1158 aa21.76■■□□□ 1.07
HDDC2-201ENST00000318787 PAPPAQ13219 1627 aa21.76■■□□□ 1.07
HDDC2-201ENST00000318787 SLC15A2Q16348 729 aa21.75■■□□□ 1.07
HDDC2-201ENST00000318787 SULT6B1Q6IMI4 303 aa21.75■■□□□ 1.07
HDDC2-201ENST00000318787 IFNL2Q8IZJ0 200 aa21.74■■□□□ 1.07
HDDC2-201ENST00000318787 PDGFDQ9GZP0 370 aaPredicted RBP21.74■■□□□ 1.07
HDDC2-201ENST00000318787 LRRC4BQ9NT99 713 aa21.74■■□□□ 1.07
HDDC2-201ENST00000318787 TUBGCP6Q96RT7 1819 aa21.73■■□□□ 1.07
HDDC2-201ENST00000318787 PHKG2P15735 406 aa21.73■■□□□ 1.07
HDDC2-201ENST00000318787 IL13P35225 146 aa21.73■■□□□ 1.07
HDDC2-201ENST00000318787 PLEKHO1Q53GL0 409 aaPredicted RBP21.73■■□□□ 1.07
HDDC2-201ENST00000318787 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.73■■□□□ 1.073e-9■□□□□ 8.1
HDDC2-201ENST00000318787 CCNL1Q9UK58 526 aaPredicted RBP21.73■■□□□ 1.07
HDDC2-201ENST00000318787 NPC1L1Q9UHC9 1359 aa21.72■■□□□ 1.07
HDDC2-201ENST00000318787 C5P01031 1676 aa21.72■■□□□ 1.07
HDDC2-201ENST00000318787 ZBTB7AO95365 584 aa21.72■■□□□ 1.07
HDDC2-201ENST00000318787 SLC27A3Q5K4L6 730 aa21.72■■□□□ 1.07
HDDC2-201ENST00000318787 ZNF530Q6P9A1 599 aaPredicted RBP21.72■■□□□ 1.07
HDDC2-201ENST00000318787 PPP1R1BQ9UD71 204 aaPredicted RBP21.72■■□□□ 1.07
HDDC2-201ENST00000318787 HMOX1P09601 288 aa21.71■■□□□ 1.07
HDDC2-201ENST00000318787 ZNF827Q17R98 1081 aa21.71■■□□□ 1.07
HDDC2-201ENST00000318787 SPON1Q9HCB6 807 aa21.71■■□□□ 1.07
HDDC2-201ENST00000318787 DIAPH1O60610 1272 aaKnown RBP21.7■■□□□ 1.06
HDDC2-201ENST00000318787 TMOD3Q9NYL9 352 aa21.7■■□□□ 1.06
HDDC2-201ENST00000318787 VIRMAQ69YN4 1812 aaKnown RBP21.7■■□□□ 1.06
HDDC2-201ENST00000318787 PALLDQ8WX93 1383 aa21.69■■□□□ 1.06
HDDC2-201ENST00000318787 TAF1LQ8IZX4 1826 aa21.69■■□□□ 1.06
HDDC2-201ENST00000318787 C1orf141Q5JVX7 400 aa21.69■■□□□ 1.06
HDDC2-201ENST00000318787 U2SURPO15042 1029 aaKnown RBP21.68■■□□□ 1.06
HDDC2-201ENST00000318787 NKX1-1Q15270 411 aaPredicted RBP21.68■■□□□ 1.06
HDDC2-201ENST00000318787 PIGBQ92521 554 aa21.68■■□□□ 1.06
HDDC2-201ENST00000318787 ATF5Q9Y2D1 282 aaPredicted RBP21.68■■□□□ 1.06
HDDC2-201ENST00000318787 AMOTQ4VCS5 1084 aa21.67■■□□□ 1.06
HDDC2-201ENST00000318787 TFCP2L1Q9NZI6 479 aa21.67■■□□□ 1.06
HDDC2-201ENST00000318787 QSER1Q2KHR3 1735 aa21.66■■□□□ 1.06
HDDC2-201ENST00000318787 KDRP35968 1356 aa21.65■■□□□ 1.06
HDDC2-201ENST00000318787 HSP90AB1P08238 724 aaKnown RBP21.64■■□□□ 1.06
HDDC2-201ENST00000318787 SMARCC1Q92922 1105 aaPredicted RBP21.64■■□□□ 1.06
HDDC2-201ENST00000318787 PLEKHG2Q9H7P9 1386 aa21.64■■□□□ 1.06
HDDC2-201ENST00000318787 SCN11AQ9UI33 1791 aa21.63■■□□□ 1.05
HDDC2-201ENST00000318787 COL3A1P02461 1466 aaPredicted RBP21.63■■□□□ 1.05
HDDC2-201ENST00000318787 AKT1S1Q96B36 256 aa21.63■■□□□ 1.05
HDDC2-201ENST00000318787 CFAP53Q96M91 514 aa21.63■■□□□ 1.05
HDDC2-201ENST00000318787 DCAF5Q96JK2 942 aa21.62■■□□□ 1.05
HDDC2-201ENST00000318787 CABP4P57796 275 aa21.61■■□□□ 1.05
HDDC2-201ENST00000318787 ASAP1Q9ULH1 1129 aa21.61■■□□□ 1.05
HDDC2-201ENST00000318787 KDM6AO15550 1401 aaPredicted RBP21.61■■□□□ 1.05
HDDC2-201ENST00000318787 C4BP0C0L5 1744 aa21.61■■□□□ 1.05
HDDC2-201ENST00000318787 PPP2R1AP30153 589 aa21.6■■□□□ 1.05
HDDC2-201ENST00000318787 MTFR1LQ9H019 292 aa21.6■■□□□ 1.05
HDDC2-201ENST00000318787 PNPLA7Q6ZV29 1317 aa21.59■■□□□ 1.05
HDDC2-201ENST00000318787 ERVV-2B6SEH9 535 aa21.58■■□□□ 1.04
HDDC2-201ENST00000318787 RBM42Q9BTD8 480 aaKnown RBP21.58■■□□□ 1.04
HDDC2-201ENST00000318787 LOC102724428A0A0B4J2F2 783 aa21.57■■□□□ 1.04
HDDC2-201ENST00000318787 SIK1P57059 783 aa21.57■■□□□ 1.04
HDDC2-201ENST00000318787 AK7Q96M32 723 aa21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms