RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 NCAPD2Q15021 1401 aa20.27■□□□□ 0.84
PDLIM5-202ENST00000318007 NFE2L2Q16236 605 aa20.26■□□□□ 0.83
PDLIM5-202ENST00000318007 ZNF530Q6P9A1 599 aaPredicted RBP20.26■□□□□ 0.83
PDLIM5-202ENST00000318007 SPATA31A5Q5VU36 1347 aa20.26■□□□□ 0.83
PDLIM5-202ENST00000318007 SPATA31A7Q8IWB4 1347 aa20.26■□□□□ 0.83
PDLIM5-202ENST00000318007 MCM10Q7L590 875 aa20.25■□□□□ 0.83
PDLIM5-202ENST00000318007 DDX54Q8TDD1 881 aaKnown RBP20.25■□□□□ 0.83
PDLIM5-202ENST00000318007 EP400Q96L91 3159 aa20.24■□□□□ 0.83
PDLIM5-202ENST00000318007 VPS72Q15906 364 aa20.24■□□□□ 0.83
PDLIM5-202ENST00000318007 PLEKHO1Q53GL0 409 aaPredicted RBP20.24■□□□□ 0.83
PDLIM5-202ENST00000318007 DLG5Q8TDM6 1919 aa20.24■□□□□ 0.83
PDLIM5-202ENST00000318007 ZBED9Q6R2W3 1325 aa20.23■□□□□ 0.83
PDLIM5-202ENST00000318007 QTRT2Q9H974 415 aaKnown RBP20.23■□□□□ 0.83
PDLIM5-202ENST00000318007 TRIM35Q9UPQ4 493 aa20.23■□□□□ 0.83
PDLIM5-202ENST00000318007 WWC1Q8IX03 1113 aa20.23■□□□□ 0.83
PDLIM5-202ENST00000318007 CDCA7LQ96GN5 454 aa20.23■□□□□ 0.83
PDLIM5-202ENST00000318007 GAS2L2Q8NHY3 880 aa20.22■□□□□ 0.83
PDLIM5-202ENST00000318007 OVOS2A0A0G2JMS6 1433 aa20.22■□□□□ 0.83
PDLIM5-202ENST00000318007 MPRIPQ6WCQ1 1025 aa20.21■□□□□ 0.83
PDLIM5-202ENST00000318007 PARP4Q9UKK3 1724 aaKnown RBP20.21■□□□□ 0.83
PDLIM5-202ENST00000318007 C1orf141Q5JVX7 400 aa20.21■□□□□ 0.83
PDLIM5-202ENST00000318007 ZCRB1Q8TBF4 217 aaKnown RBP20.21■□□□□ 0.83
PDLIM5-202ENST00000318007 GJD4Q96KN9 370 aaPredicted RBP20.21■□□□□ 0.83
PDLIM5-202ENST00000318007 TRPC5Q9UL62 973 aaPredicted RBP20.21■□□□□ 0.83
PDLIM5-202ENST00000318007 LAS1LQ9Y4W2 734 aaKnown RBP20.21■□□□□ 0.83
PDLIM5-202ENST00000318007 SPG7Q9UQ90 795 aa20.2■□□□□ 0.82
PDLIM5-202ENST00000318007 AMOTQ4VCS5 1084 aa20.19■□□□□ 0.82
PDLIM5-202ENST00000318007 RTF1Q92541 710 aaKnown RBP20.19■□□□□ 0.82
PDLIM5-202ENST00000318007 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.19■□□□□ 0.82
PDLIM5-202ENST00000318007 GNAT3A8MTJ3 354 aa20.19■□□□□ 0.82
PDLIM5-202ENST00000318007 CYP27B1O15528 508 aa20.19■□□□□ 0.82
PDLIM5-202ENST00000318007 SPINK5Q9NQ38 1064 aaPredicted RBP20.19■□□□□ 0.82
PDLIM5-202ENST00000318007 LGR6Q9HBX8 967 aa20.18■□□□□ 0.82
PDLIM5-202ENST00000318007 MAP3K5Q99683 1374 aa20.18■□□□□ 0.82
PDLIM5-202ENST00000318007 GLI3P10071 1580 aa20.18■□□□□ 0.82
PDLIM5-202ENST00000318007 DISP2A7MBM2 1401 aa20.17■□□□□ 0.82
PDLIM5-202ENST00000318007 WNK3Q9BYP7 1800 aa20.17■□□□□ 0.82
PDLIM5-202ENST00000318007 DDB1Q16531 1140 aa20.17■□□□□ 0.82
PDLIM5-202ENST00000318007 ATRNO75882 1429 aa20.16■□□□□ 0.82
PDLIM5-202ENST00000318007 EXOC5O00471 708 aa20.16■□□□□ 0.82
PDLIM5-202ENST00000318007 PHKG2P15735 406 aa20.16■□□□□ 0.82
PDLIM5-202ENST00000318007 FAM182BQ5T319 152 aa20.16■□□□□ 0.82
PDLIM5-202ENST00000318007 THRAP3Q9Y2W1 955 aaKnown RBP20.16■□□□□ 0.82
PDLIM5-202ENST00000318007 PKD1L3Q7Z443 1732 aa20.16■□□□□ 0.82
PDLIM5-202ENST00000318007 AKAP4Q5JQC9 854 aa20.15■□□□□ 0.82
PDLIM5-202ENST00000318007 PCDH11XQ9BZA7 1347 aa20.15■□□□□ 0.82
PDLIM5-202ENST00000318007 PCDH11YQ9BZA8 1340 aa20.15■□□□□ 0.82
PDLIM5-202ENST00000318007 ZNF772Q68DY9 489 aaPredicted RBP20.15■□□□□ 0.82
PDLIM5-202ENST00000318007 MIS18AQ9NYP9 233 aa20.15■□□□□ 0.82
PDLIM5-202ENST00000318007 ZNF521Q96K83 1311 aa20.15■□□□□ 0.82
PDLIM5-202ENST00000318007 IFNL2Q8IZJ0 200 aa20.14■□□□□ 0.81
PDLIM5-202ENST00000318007 IL17REQ8NFR9 667 aa20.14■□□□□ 0.81
PDLIM5-202ENST00000318007 RGS17Q9UGC6 210 aaPredicted RBP20.14■□□□□ 0.81
PDLIM5-202ENST00000318007 SHANK3Q9BYB0 1731 aa20.14■□□□□ 0.81
PDLIM5-202ENST00000318007 GOLGA2Q08379 1002 aa20.14■□□□□ 0.81
PDLIM5-202ENST00000318007 BARGINQ6ZT62 677 aa20.14■□□□□ 0.81
PDLIM5-202ENST00000318007 TSR2Q969E8 191 aaKnown RBP20.14■□□□□ 0.81
PDLIM5-202ENST00000318007 LRRC37A3O60309 1634 aa20.13■□□□□ 0.81
PDLIM5-202ENST00000318007 LMOD3Q0VAK6 560 aa20.13■□□□□ 0.81
PDLIM5-202ENST00000318007 CCDC27Q2M243 656 aa20.12■□□□□ 0.81
PDLIM5-202ENST00000318007 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.12■□□□□ 0.817e-7■■■■□ 21.5
PDLIM5-202ENST00000318007 TNS2Q63HR2 1409 aa20.11■□□□□ 0.81
PDLIM5-202ENST00000318007 KDM6AO15550 1401 aaPredicted RBP20.11■□□□□ 0.81
PDLIM5-202ENST00000318007 POTEAQ6S8J7 498 aa20.1■□□□□ 0.81
PDLIM5-202ENST00000318007 SEPT12Q8IYM1 358 aa20.1■□□□□ 0.81
PDLIM5-202ENST00000318007 RNMTO43148 476 aaKnown RBP20.1■□□□□ 0.81
PDLIM5-202ENST00000318007 SYTL4Q96C24 671 aaPredicted RBP20.1■□□□□ 0.81
PDLIM5-202ENST00000318007 PDE3BQ13370 1112 aa20.09■□□□□ 0.81
PDLIM5-202ENST00000318007 CDCA7Q9BWT1 371 aaPredicted RBP20.09■□□□□ 0.81
PDLIM5-202ENST00000318007 TEFQ10587 303 aa20.08■□□□□ 0.81
PDLIM5-202ENST00000318007 MARCH10Q8NA82 808 aaPredicted RBP20.08■□□□□ 0.81
PDLIM5-202ENST00000318007 ACSBG1Q96GR2 724 aa20.08■□□□□ 0.81
PDLIM5-202ENST00000318007 VIRMAQ69YN4 1812 aaKnown RBP20.08■□□□□ 0.81
PDLIM5-202ENST00000318007 KAT6BQ8WYB5 2073 aa20.08■□□□□ 0.8
PDLIM5-202ENST00000318007 WDR63Q8IWG1 891 aa20.07■□□□□ 0.8
PDLIM5-202ENST00000318007 NGEFQ8N5V2 710 aa20.06■□□□□ 0.8
PDLIM5-202ENST00000318007 NFATC2IPQ8NCF5 419 aa20.06■□□□□ 0.8
PDLIM5-202ENST00000318007 DCAF5Q96JK2 942 aa20.06■□□□□ 0.8
PDLIM5-202ENST00000318007 RXRBP28702 533 aa20.06■□□□□ 0.8
PDLIM5-202ENST00000318007 RBM6P78332 1123 aaKnown RBP20.06■□□□□ 0.8
PDLIM5-202ENST00000318007 SLFN5Q08AF3 891 aa20.06■□□□□ 0.8
PDLIM5-202ENST00000318007 THSD7AQ9UPZ6 1657 aa20.05■□□□□ 0.8
PDLIM5-202ENST00000318007 MBIPQ9NS73 344 aa20.05■□□□□ 0.8
PDLIM5-202ENST00000318007 FANCIQ9NVI1 1328 aa20.05■□□□□ 0.8
PDLIM5-202ENST00000318007 E9PSI1 815 aa20.04■□□□□ 0.8
PDLIM5-202ENST00000318007 HTATSF1O43719 755 aaKnown RBP20.04■□□□□ 0.8
PDLIM5-202ENST00000318007 CENPBP07199 599 aaPredicted RBP20.04■□□□□ 0.8
PDLIM5-202ENST00000318007 TSPYL4Q9UJ04 414 aa20.04■□□□□ 0.8
PDLIM5-202ENST00000318007 CEMIPQ8WUJ3 1361 aa20.04■□□□□ 0.8
PDLIM5-202ENST00000318007 ELL2O00472 640 aaPredicted RBP20.04■□□□□ 0.8
PDLIM5-202ENST00000318007 CABP4P57796 275 aa20.04■□□□□ 0.8
PDLIM5-202ENST00000318007 DUSP27Q5VZP5 1158 aa20.04■□□□□ 0.8
PDLIM5-202ENST00000318007 HSP90AB1P08238 724 aaKnown RBP20.03■□□□□ 0.8
PDLIM5-202ENST00000318007 SLC39A6Q13433 755 aa20.03■□□□□ 0.8
PDLIM5-202ENST00000318007 KRT24Q2M2I5 525 aa20.03■□□□□ 0.8
PDLIM5-202ENST00000318007 TOGARAM1Q9Y4F4 1720 aa20.03■□□□□ 0.8
PDLIM5-202ENST00000318007 SCN11AQ9UI33 1791 aa20.03■□□□□ 0.8
PDLIM5-202ENST00000318007 BTBD11A6QL63 1104 aa20.03■□□□□ 0.8
PDLIM5-202ENST00000318007 CALD1Q05682 793 aaKnown RBP20.03■□□□□ 0.8
PDLIM5-202ENST00000318007 CFAP44Q96MT7 982 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 100.9 ms