RNA–Protein interactions for RNA: ENST00000312547.6

CHMP2A-201, Transcript of charged multivesicular body protein 2A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP2A, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2A-201ENST00000312547 PRKAR2BP31323 418 aa16.84■□□□□ 0.29
CHMP2A-201ENST00000312547 FAM98CQ17RN3 349 aaKnown RBP16.84■□□□□ 0.29
CHMP2A-201ENST00000312547 RAPGEF4Q8WZA2 1011 aa16.84■□□□□ 0.29
CHMP2A-201ENST00000312547 RGS12O14924 1447 aa16.84■□□□□ 0.29
CHMP2A-201ENST00000312547 EP400Q96L91 3159 aa16.83■□□□□ 0.29
CHMP2A-201ENST00000312547 TATP17735 454 aaPredicted RBP16.83■□□□□ 0.28
CHMP2A-201ENST00000312547 THSD7AQ9UPZ6 1657 aa16.82■□□□□ 0.28
CHMP2A-201ENST00000312547 RXRBP28702 533 aa16.82■□□□□ 0.28
CHMP2A-201ENST00000312547 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.82■□□□□ 0.28
CHMP2A-201ENST00000312547 FAM9BQ8IZU0 186 aa16.81■□□□□ 0.28
CHMP2A-201ENST00000312547 PHACTR3Q96KR7 559 aa16.81■□□□□ 0.28
CHMP2A-201ENST00000312547 PNNQ9H307 717 aaKnown RBP16.81■□□□□ 0.28
CHMP2A-201ENST00000312547 WNK3Q9BYP7 1800 aa16.8■□□□□ 0.28
CHMP2A-201ENST00000312547 TNS2Q63HR2 1409 aa16.79■□□□□ 0.28
CHMP2A-201ENST00000312547 AMOTQ4VCS5 1084 aa16.79■□□□□ 0.28
CHMP2A-201ENST00000312547 SEPT12Q8IYM1 358 aa16.79■□□□□ 0.28
CHMP2A-201ENST00000312547 RUNDC1Q96C34 613 aa16.79■□□□□ 0.28
CHMP2A-201ENST00000312547 PARP4Q9UKK3 1724 aaKnown RBP16.79■□□□□ 0.28
CHMP2A-201ENST00000312547 PLEKHO1Q53GL0 409 aaPredicted RBP16.78■□□□□ 0.28
CHMP2A-201ENST00000312547 CCDC146Q8IYE0 955 aa16.78■□□□□ 0.28
CHMP2A-201ENST00000312547 ZCRB1Q8TBF4 217 aaKnown RBP16.78■□□□□ 0.28
CHMP2A-201ENST00000312547 LRRC37A3O60309 1634 aa16.78■□□□□ 0.28
CHMP2A-201ENST00000312547 EXOC5O00471 708 aa16.77■□□□□ 0.28
CHMP2A-201ENST00000312547 DDB1Q16531 1140 aa16.77■□□□□ 0.28
CHMP2A-201ENST00000312547 MTHFSDQ2M296 383 aaKnown RBP16.77■□□□□ 0.28
CHMP2A-201ENST00000312547 SPG7Q9UQ90 795 aa16.77■□□□□ 0.28
CHMP2A-201ENST00000312547 PKD1L3Q7Z443 1732 aa16.76■□□□□ 0.27
CHMP2A-201ENST00000312547 MAPK8IP3Q9UPT6 1336 aa16.75■□□□□ 0.27
CHMP2A-201ENST00000312547 CYP27B1O15528 508 aa16.75■□□□□ 0.27
CHMP2A-201ENST00000312547 GAS2L2Q8NHY3 880 aa16.75■□□□□ 0.27
CHMP2A-201ENST00000312547 PCDH11XQ9BZA7 1347 aa16.74■□□□□ 0.27
CHMP2A-201ENST00000312547 PCDH11YQ9BZA8 1340 aa16.74■□□□□ 0.27
CHMP2A-201ENST00000312547 NEFMP07197 916 aa16.74■□□□□ 0.27
CHMP2A-201ENST00000312547 NFE2L2Q16236 605 aa16.74■□□□□ 0.27
CHMP2A-201ENST00000312547 ZNF530Q6P9A1 599 aaPredicted RBP16.74■□□□□ 0.27
CHMP2A-201ENST00000312547 A0A0G2JS52 829 aa16.73■□□□□ 0.27
CHMP2A-201ENST00000312547 APAF1O14727 1248 aa16.73■□□□□ 0.27
CHMP2A-201ENST00000312547 PHKG2P15735 406 aa16.73■□□□□ 0.27
CHMP2A-201ENST00000312547 TMPOP42166 694 aaKnown RBP16.73■□□□□ 0.27
CHMP2A-201ENST00000312547 MYT1Q01538 1121 aa16.73■□□□□ 0.27
CHMP2A-201ENST00000312547 MARCH10Q8NA82 808 aaPredicted RBP16.73■□□□□ 0.27
CHMP2A-201ENST00000312547 SHANK3Q9BYB0 1731 aa16.73■□□□□ 0.27
CHMP2A-201ENST00000312547 NKX1-1Q15270 411 aaPredicted RBP16.72■□□□□ 0.27
CHMP2A-201ENST00000312547 AKAP4Q5JQC9 854 aa16.72■□□□□ 0.27
CHMP2A-201ENST00000312547 IFNL2Q8IZJ0 200 aa16.72■□□□□ 0.27
CHMP2A-201ENST00000312547 PDE3BQ13370 1112 aa16.71■□□□□ 0.27
CHMP2A-201ENST00000312547 NCBP3Q53F19 620 aaKnown RBP16.71■□□□□ 0.27
CHMP2A-201ENST00000312547 DDX54Q8TDD1 881 aaKnown RBP16.71■□□□□ 0.27
CHMP2A-201ENST00000312547 MAP3K5Q99683 1374 aa16.7■□□□□ 0.26
CHMP2A-201ENST00000312547 KRT27Q7Z3Y8 459 aa16.7■□□□□ 0.26
CHMP2A-201ENST00000312547 BRWD3Q6RI45 1802 aa16.7■□□□□ 0.26
CHMP2A-201ENST00000312547 BCL9O00512 1426 aa16.7■□□□□ 0.26
CHMP2A-201ENST00000312547 HTATSF1O43719 755 aaKnown RBP16.69■□□□□ 0.26
CHMP2A-201ENST00000312547 HSP90AB1P08238 724 aaKnown RBP16.69■□□□□ 0.26
CHMP2A-201ENST00000312547 C1orf141Q5JVX7 400 aa16.69■□□□□ 0.26
CHMP2A-201ENST00000312547 RRP7AQ9Y3A4 280 aaKnown RBP16.69■□□□□ 0.26
CHMP2A-201ENST00000312547 GNAT3A8MTJ3 354 aa16.68■□□□□ 0.26
CHMP2A-201ENST00000312547 RIPK4P57078 832 aa16.68■□□□□ 0.26
CHMP2A-201ENST00000312547 KDM6AO15550 1401 aaPredicted RBP16.68■□□□□ 0.26
CHMP2A-201ENST00000312547 DCAF5Q96JK2 942 aa16.67■□□□□ 0.26
CHMP2A-201ENST00000312547 TRIM35Q9UPQ4 493 aa16.67■□□□□ 0.26
CHMP2A-201ENST00000312547 CEMIPQ8WUJ3 1361 aa16.66■□□□□ 0.26
CHMP2A-201ENST00000312547 CCDC27Q2M243 656 aa16.66■□□□□ 0.26
CHMP2A-201ENST00000312547 MPRIPQ6WCQ1 1025 aa16.66■□□□□ 0.26
CHMP2A-201ENST00000312547 NGEFQ8N5V2 710 aa16.66■□□□□ 0.26
CHMP2A-201ENST00000312547 IL17REQ8NFR9 667 aa16.66■□□□□ 0.26
CHMP2A-201ENST00000312547 ADAMTS7Q9UKP4 1686 aa16.65■□□□□ 0.26
CHMP2A-201ENST00000312547 RNMTO43148 476 aaKnown RBP16.65■□□□□ 0.26
CHMP2A-201ENST00000312547 LMOD3Q0VAK6 560 aa16.65■□□□□ 0.26
CHMP2A-201ENST00000312547 NEUROD2Q15784 382 aa16.65■□□□□ 0.26
CHMP2A-201ENST00000312547 LGR6Q9HBX8 967 aa16.65■□□□□ 0.26
CHMP2A-201ENST00000312547 SENP3-EIF4A1A0A087X0R7 540 aa16.64■□□□□ 0.25
CHMP2A-201ENST00000312547 FAM182BQ5T319 152 aa16.64■□□□□ 0.25
CHMP2A-201ENST00000312547 DCTN1Q14203 1278 aa16.63■□□□□ 0.25
CHMP2A-201ENST00000312547 FAM196AQ6ZSG2 479 aa16.63■□□□□ 0.25
CHMP2A-201ENST00000312547 MCM10Q7L590 875 aa16.63■□□□□ 0.25
CHMP2A-201ENST00000312547 RTF1Q92541 710 aaKnown RBP16.63■□□□□ 0.25
CHMP2A-201ENST00000312547 ERVV-2B6SEH9 535 aa16.62■□□□□ 0.25
CHMP2A-201ENST00000312547 WWC1Q8IX03 1113 aa16.62■□□□□ 0.25
CHMP2A-201ENST00000312547 THUMPD2Q9BTF0 503 aaKnown RBP16.62■□□□□ 0.25
CHMP2A-201ENST00000312547 ZNF521Q96K83 1311 aa16.62■□□□□ 0.25
CHMP2A-201ENST00000312547 MRC1P22897 1456 aa16.61■□□□□ 0.25
CHMP2A-201ENST00000312547 TOGARAM1Q9Y4F4 1720 aa16.6■□□□□ 0.25
CHMP2A-201ENST00000312547 HNRNPUQ00839 825 aaKnown RBP eCLIP16.6■□□□□ 0.25
CHMP2A-201ENST00000312547 SLC52A2Q9HAB3 445 aa16.6■□□□□ 0.25
CHMP2A-201ENST00000312547 DLG5Q8TDM6 1919 aa16.59■□□□□ 0.25
CHMP2A-201ENST00000312547 PRIM1P49642 420 aaKnown RBP16.59■□□□□ 0.25
CHMP2A-201ENST00000312547 SALL2Q9Y467 1007 aaPredicted RBP16.59■□□□□ 0.25
CHMP2A-201ENST00000312547 KCNQ2O43526 872 aa16.58■□□□□ 0.24
CHMP2A-201ENST00000312547 CABP4P57796 275 aa16.58■□□□□ 0.24
CHMP2A-201ENST00000312547 ACSBG1Q96GR2 724 aa16.58■□□□□ 0.24
CHMP2A-201ENST00000312547 SCN11AQ9UI33 1791 aa16.58■□□□□ 0.24
CHMP2A-201ENST00000312547 TEFQ10587 303 aa16.57■□□□□ 0.24
CHMP2A-201ENST00000312547 WDR63Q8IWG1 891 aa16.57■□□□□ 0.24
CHMP2A-201ENST00000312547 NFATC2IPQ8NCF5 419 aa16.57■□□□□ 0.24
CHMP2A-201ENST00000312547 PIGBQ92521 554 aa16.57■□□□□ 0.24
CHMP2A-201ENST00000312547 DOT1LQ8TEK3 1739 aa16.56■□□□□ 0.24
CHMP2A-201ENST00000312547 IL16Q14005 1332 aa16.56■□□□□ 0.24
CHMP2A-201ENST00000312547 CALD1Q05682 793 aaKnown RBP16.56■□□□□ 0.24
CHMP2A-201ENST00000312547 TAF7Q15545 349 aaPredicted RBP16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms