RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 EMILIN1Q9Y6C2 1016 aa26.99■■□□□ 1.91
LIME1-201ENST00000309546 ANKRD26Q9UPS8 1709 aa26.99■■□□□ 1.91
LIME1-201ENST00000309546 KIF24Q5T7B8 1368 aa26.98■■□□□ 1.91
LIME1-201ENST00000309546 MAP2P11137 1827 aaKnown RBP26.98■■□□□ 1.91
LIME1-201ENST00000309546 ZCRB1Q8TBF4 217 aaKnown RBP26.98■■□□□ 1.91
LIME1-201ENST00000309546 STK32BQ9NY57 414 aa26.98■■□□□ 1.91
LIME1-201ENST00000309546 PPM1GO15355 546 aaPredicted RBP26.97■■□□□ 1.91
LIME1-201ENST00000309546 RAPGEF4Q8WZA2 1011 aa26.97■■□□□ 1.91
LIME1-201ENST00000309546 SPON1Q9HCB6 807 aa26.97■■□□□ 1.91
LIME1-201ENST00000309546 SYTL4Q96C24 671 aaPredicted RBP26.96■■□□□ 1.91
LIME1-201ENST00000309546 PPP1R1BQ9UD71 204 aaPredicted RBP26.94■■□□□ 1.9
LIME1-201ENST00000309546 TATP17735 454 aaPredicted RBP26.93■■□□□ 1.9
LIME1-201ENST00000309546 SLC15A2Q16348 729 aa26.93■■□□□ 1.9
LIME1-201ENST00000309546 PDGFDQ9GZP0 370 aaPredicted RBP26.93■■□□□ 1.9
LIME1-201ENST00000309546 PAPPAQ13219 1627 aa26.93■■□□□ 1.9
LIME1-201ENST00000309546 PRIM1P49642 420 aaKnown RBP26.9■■□□□ 1.9
LIME1-201ENST00000309546 ZBTB7AO95365 584 aa26.89■■□□□ 1.9
LIME1-201ENST00000309546 TNNT2P45379 298 aaPredicted RBP26.89■■□□□ 1.9
LIME1-201ENST00000309546 PANK3Q9H999 370 aa26.89■■□□□ 1.9
LIME1-201ENST00000309546 PCDH11XQ9BZA7 1347 aa26.87■■□□□ 1.89
LIME1-201ENST00000309546 PCDH11YQ9BZA8 1340 aa26.87■■□□□ 1.89
LIME1-201ENST00000309546 NSD2O96028 1365 aa26.86■■□□□ 1.89
LIME1-201ENST00000309546 LRRC4BQ9NT99 713 aa26.86■■□□□ 1.89
LIME1-201ENST00000309546 WASHC2AQ641Q2 1341 aa26.86■■□□□ 1.89
LIME1-201ENST00000309546 LY75O60449 1722 aa26.85■■□□□ 1.89
LIME1-201ENST00000309546 PKD1L3Q7Z443 1732 aa26.85■■□□□ 1.89
LIME1-201ENST00000309546 POLKQ9UBT6 870 aa26.85■■□□□ 1.89
LIME1-201ENST00000309546 ZNF827Q17R98 1081 aa26.83■■□□□ 1.89
LIME1-201ENST00000309546 ATF5Q9Y2D1 282 aaPredicted RBP26.83■■□□□ 1.89
LIME1-201ENST00000309546 SLC27A3Q5K4L6 730 aa26.82■■□□□ 1.88
LIME1-201ENST00000309546 NCAPD2Q15021 1401 aa26.82■■□□□ 1.88
LIME1-201ENST00000309546 KCNQ4P56696 695 aa26.81■■□□□ 1.88
LIME1-201ENST00000309546 EYA1Q99502 592 aa26.8■■□□□ 1.88
LIME1-201ENST00000309546 TOGARAM1Q9Y4F4 1720 aa26.79■■□□□ 1.88
LIME1-201ENST00000309546 TUBGCP6Q96RT7 1819 aa26.79■■□□□ 1.88
LIME1-201ENST00000309546 CYP27B1O15528 508 aa26.78■■□□□ 1.88
LIME1-201ENST00000309546 QSER1Q2KHR3 1735 aa26.78■■□□□ 1.88
LIME1-201ENST00000309546 ITGB4P16144 1822 aa26.78■■□□□ 1.88
LIME1-201ENST00000309546 MTFR1LQ9H019 292 aa26.77■■□□□ 1.88
LIME1-201ENST00000309546 PTGER2P43116 358 aa26.76■■□□□ 1.87
LIME1-201ENST00000309546 EIF4A2Q14240 407 aaKnown RBP26.76■■□□□ 1.87
LIME1-201ENST00000309546 AKT1S1Q96B36 256 aa26.76■■□□□ 1.87
LIME1-201ENST00000309546 CCNL1Q9UK58 526 aaPredicted RBP26.76■■□□□ 1.87
LIME1-201ENST00000309546 SPG7Q9UQ90 795 aa26.75■■□□□ 1.87
LIME1-201ENST00000309546 KIF7Q2M1P5 1343 aa26.74■■□□□ 1.87
LIME1-201ENST00000309546 MPRIPQ6WCQ1 1025 aa26.74■■□□□ 1.87
LIME1-201ENST00000309546 MORC1Q86VD1 984 aa26.74■■□□□ 1.87
LIME1-201ENST00000309546 KNSTRNQ9Y448 316 aa26.74■■□□□ 1.87
LIME1-201ENST00000309546 TFCP2L1Q9NZI6 479 aa26.72■■□□□ 1.87
LIME1-201ENST00000309546 C5P01031 1676 aa26.71■■□□□ 1.87
LIME1-201ENST00000309546 PNPLA7Q6ZV29 1317 aa26.7■■□□□ 1.87
LIME1-201ENST00000309546 PALLDQ8WX93 1383 aa26.7■■□□□ 1.86
LIME1-201ENST00000309546 IGSF1Q8N6C5 1336 aa26.67■■□□□ 1.86
LIME1-201ENST00000309546 TAF1LQ8IZX4 1826 aa26.67■■□□□ 1.86
LIME1-201ENST00000309546 DCAF8L1A6NGE4 600 aa26.67■■□□□ 1.86
LIME1-201ENST00000309546 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.67■■□□□ 1.86
LIME1-201ENST00000309546 SGIP1Q9BQI5 828 aa26.66■■□□□ 1.86
LIME1-201ENST00000309546 FHDC1Q9C0D6 1143 aaPredicted RBP26.66■■□□□ 1.86
LIME1-201ENST00000309546 NKX1-1Q15270 411 aaPredicted RBP26.65■■□□□ 1.86
LIME1-201ENST00000309546 PHKG2P15735 406 aa26.64■■□□□ 1.86
LIME1-201ENST00000309546 IFNL2Q8IZJ0 200 aa26.64■■□□□ 1.86
LIME1-201ENST00000309546 ARXQ96QS3 562 aa26.64■■□□□ 1.86
LIME1-201ENST00000309546 SLC16A10Q8TF71 515 aa26.63■■□□□ 1.85
LIME1-201ENST00000309546 PIGBQ92521 554 aa26.63■■□□□ 1.85
LIME1-201ENST00000309546 SMARCC1Q92922 1105 aaPredicted RBP26.63■■□□□ 1.85
LIME1-201ENST00000309546 MSH5O43196 834 aa26.62■■□□□ 1.85
LIME1-201ENST00000309546 AMER1Q5JTC6 1135 aaPredicted RBP26.62■■□□□ 1.85
LIME1-201ENST00000309546 TMOD3Q9NYL9 352 aa26.62■■□□□ 1.85
LIME1-201ENST00000309546 COL24A1Q17RW2 1714 aa26.61■■□□□ 1.85
LIME1-201ENST00000309546 SYT17Q9BSW7 474 aa26.6■■□□□ 1.85
LIME1-201ENST00000309546 PLEKHG2Q9H7P9 1386 aa26.59■■□□□ 1.85
LIME1-201ENST00000309546 C4BP0C0L5 1744 aa26.59■■□□□ 1.85
LIME1-201ENST00000309546 POLD1P28340 1107 aa26.59■■□□□ 1.85
LIME1-201ENST00000309546 KLHL34Q8N239 644 aa26.59■■□□□ 1.85
LIME1-201ENST00000309546 AEBP1Q8IUX7 1158 aa26.58■■□□□ 1.85
LIME1-201ENST00000309546 PLEKHO1Q53GL0 409 aaPredicted RBP26.57■■□□□ 1.84
LIME1-201ENST00000309546 COL23A1Q86Y22 540 aaPredicted RBP26.57■■□□□ 1.84
LIME1-201ENST00000309546 CC2D1BQ5T0F9 858 aaKnown RBP26.56■■□□□ 1.84
LIME1-201ENST00000309546 HMGB2P26583 209 aaKnown RBP26.55■■□□□ 1.84
LIME1-201ENST00000309546 ZNF530Q6P9A1 599 aaPredicted RBP26.55■■□□□ 1.84
LIME1-201ENST00000309546 YY1P25490 414 aa26.54■■□□□ 1.84
LIME1-201ENST00000309546 SULT6B1Q6IMI4 303 aa26.54■■□□□ 1.84
LIME1-201ENST00000309546 AK7Q96M32 723 aa26.54■■□□□ 1.84
LIME1-201ENST00000309546 ASAP1Q9ULH1 1129 aa26.54■■□□□ 1.84
LIME1-201ENST00000309546 LOC102724428A0A0B4J2F2 783 aa26.53■■□□□ 1.84
LIME1-201ENST00000309546 IL13P35225 146 aa26.53■■□□□ 1.84
LIME1-201ENST00000309546 SIK1P57059 783 aa26.53■■□□□ 1.84
LIME1-201ENST00000309546 CNGB1Q14028 1251 aaPredicted RBP26.53■■□□□ 1.84
LIME1-201ENST00000309546 AMOTQ4VCS5 1084 aa26.53■■□□□ 1.84
LIME1-201ENST00000309546 UBR3Q6ZT12 1888 aa26.53■■□□□ 1.84
LIME1-201ENST00000309546 PER1O15534 1290 aaPredicted RBP26.52■■□□□ 1.84
LIME1-201ENST00000309546 HSP90AB1P08238 724 aaKnown RBP26.52■■□□□ 1.84
LIME1-201ENST00000309546 MSL1Q68DK7 614 aa26.52■■□□□ 1.84
LIME1-201ENST00000309546 MAP3K5Q99683 1374 aa26.52■■□□□ 1.84
LIME1-201ENST00000309546 MTHFSP49914 203 aa26.51■■□□□ 1.83
LIME1-201ENST00000309546 KDM6AO15550 1401 aaPredicted RBP26.5■■□□□ 1.83
LIME1-201ENST00000309546 DCAF5Q96JK2 942 aa26.5■■□□□ 1.83
LIME1-201ENST00000309546 PHF14O94880 888 aa26.49■■□□□ 1.83
LIME1-201ENST00000309546 C1orf141Q5JVX7 400 aa26.49■■□□□ 1.83
LIME1-201ENST00000309546 FLAD1Q8NFF5 587 aa26.49■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms