RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 CGNL1Q0VF96 1302 aa20.78■□□□□ 0.92
CCDC88B-201ENST00000301897 PRIM1P49642 420 aaKnown RBP20.77■□□□□ 0.92
CCDC88B-201ENST00000301897 COL24A1Q17RW2 1714 aa20.76■□□□□ 0.91
CCDC88B-201ENST00000301897 DOT1LQ8TEK3 1739 aa20.76■□□□□ 0.91
CCDC88B-201ENST00000301897 ST20-MTHFSA0A0A6YYL1 179 aa20.76■□□□□ 0.91
CCDC88B-201ENST00000301897 GPR162Q16538 588 aa20.76■□□□□ 0.91
CCDC88B-201ENST00000301897 LY75O60449 1722 aa20.75■□□□□ 0.91
CCDC88B-201ENST00000301897 PNPLA7Q6ZV29 1317 aa20.75■□□□□ 0.91
CCDC88B-201ENST00000301897 SMG6Q86US8 1419 aaKnown RBP20.74■□□□□ 0.91
CCDC88B-201ENST00000301897 TUBGCP6Q96RT7 1819 aa20.72■□□□□ 0.91
CCDC88B-201ENST00000301897 GOLGB1Q14789 3259 aaKnown RBP20.72■□□□□ 0.91
CCDC88B-201ENST00000301897 SHANK3Q9BYB0 1731 aa20.72■□□□□ 0.91
CCDC88B-201ENST00000301897 RGPD2P0DJD1 1756 aa20.72■□□□□ 0.91
CCDC88B-201ENST00000301897 NSD2O96028 1365 aa20.72■□□□□ 0.91
CCDC88B-201ENST00000301897 USP47Q96K76 1375 aa20.72■□□□□ 0.91
CCDC88B-201ENST00000301897 RAPGEF4Q8WZA2 1011 aa20.71■□□□□ 0.91
CCDC88B-201ENST00000301897 CCNL1Q9UK58 526 aaPredicted RBP20.71■□□□□ 0.91
CCDC88B-201ENST00000301897 MEGF6O75095 1541 aa20.71■□□□□ 0.91
CCDC88B-201ENST00000301897 KLHL34Q8N239 644 aa20.7■□□□□ 0.9
CCDC88B-201ENST00000301897 TMF1P82094 1093 aa20.68■□□□□ 0.9
CCDC88B-201ENST00000301897 KIF24Q5T7B8 1368 aa20.68■□□□□ 0.9
CCDC88B-201ENST00000301897 FYB1O15117 783 aa20.67■□□□□ 0.9
CCDC88B-201ENST00000301897 TATP17735 454 aaPredicted RBP20.67■□□□□ 0.9
CCDC88B-201ENST00000301897 FBLN1P23142 703 aa20.67■□□□□ 0.9
CCDC88B-201ENST00000301897 KCNQ4P56696 695 aa20.67■□□□□ 0.9
CCDC88B-201ENST00000301897 C1QTNF8P60827 252 aa20.67■□□□□ 0.9
CCDC88B-201ENST00000301897 RRS1Q15050 365 aaKnown RBP20.67■□□□□ 0.9
CCDC88B-201ENST00000301897 CDCA8Q53HL2 280 aa20.67■□□□□ 0.9
CCDC88B-201ENST00000301897 NBPF6Q5VWK0 638 aa20.67■□□□□ 0.9
CCDC88B-201ENST00000301897 NBPF4Q96M43 638 aa20.67■□□□□ 0.9
CCDC88B-201ENST00000301897 PCDH11XQ9BZA7 1347 aa20.66■□□□□ 0.9
CCDC88B-201ENST00000301897 PCDH11YQ9BZA8 1340 aa20.66■□□□□ 0.9
CCDC88B-201ENST00000301897 INSRP06213 1382 aa20.65■□□□□ 0.9
CCDC88B-201ENST00000301897 MSH5O43196 834 aa20.65■□□□□ 0.9
CCDC88B-201ENST00000301897 GRIN3BO60391 1043 aa20.65■□□□□ 0.9
CCDC88B-201ENST00000301897 PELP1Q8IZL8 1130 aaKnown RBP20.65■□□□□ 0.9
CCDC88B-201ENST00000301897 FLAD1Q8NFF5 587 aa20.65■□□□□ 0.9
CCDC88B-201ENST00000301897 GGNBP2Q9H3C7 697 aa20.65■□□□□ 0.9
CCDC88B-201ENST00000301897 FLT4P35916 1363 aa20.64■□□□□ 0.89
CCDC88B-201ENST00000301897 KIF20BQ96Q89 1820 aa20.62■□□□□ 0.89
CCDC88B-201ENST00000301897 C5P01031 1676 aa20.62■□□□□ 0.89
CCDC88B-201ENST00000301897 SENP3-EIF4A1A0A087X0R7 540 aa20.62■□□□□ 0.89
CCDC88B-201ENST00000301897 COL23A1Q86Y22 540 aaPredicted RBP20.62■□□□□ 0.89
CCDC88B-201ENST00000301897 USHBP1Q8N6Y0 703 aa20.62■□□□□ 0.89
CCDC88B-201ENST00000301897 NLGN2Q8NFZ4 835 aa20.62■□□□□ 0.89
CCDC88B-201ENST00000301897 GIGYF1O75420 1035 aaPredicted RBP20.6■□□□□ 0.89
CCDC88B-201ENST00000301897 SMARCC1Q92922 1105 aaPredicted RBP20.6■□□□□ 0.89
CCDC88B-201ENST00000301897 PALLDQ8WX93 1383 aa20.59■□□□□ 0.89
CCDC88B-201ENST00000301897 HSP90AB2PQ58FF8 381 aa20.59■□□□□ 0.89
CCDC88B-201ENST00000301897 TAF1LQ8IZX4 1826 aa20.58■□□□□ 0.89
CCDC88B-201ENST00000301897 CD2APQ9Y5K6 639 aa20.58■□□□□ 0.89
CCDC88B-201ENST00000301897 NSD3Q9BZ95 1437 aa20.58■□□□□ 0.88
CCDC88B-201ENST00000301897 MPRIPQ6WCQ1 1025 aa20.56■□□□□ 0.88
CCDC88B-201ENST00000301897 CYP27B1O15528 508 aa20.55■□□□□ 0.88
CCDC88B-201ENST00000301897 MSL1Q68DK7 614 aa20.55■□□□□ 0.88
CCDC88B-201ENST00000301897 PKD1L3Q7Z443 1732 aa20.55■□□□□ 0.88
CCDC88B-201ENST00000301897 YBX3P16989 372 aaKnown RBP eCLIP20.54■□□□□ 0.88
CCDC88B-201ENST00000301897 AK7Q96M32 723 aa20.54■□□□□ 0.88
CCDC88B-201ENST00000301897 ITGB4P16144 1822 aa20.54■□□□□ 0.88
CCDC88B-201ENST00000301897 SPG7Q9UQ90 795 aa20.53■□□□□ 0.88
CCDC88B-201ENST00000301897 C4BP0C0L5 1744 aa20.53■□□□□ 0.88
CCDC88B-201ENST00000301897 NCAPD2Q15021 1401 aa20.53■□□□□ 0.88
CCDC88B-201ENST00000301897 NKX1-1Q15270 411 aaPredicted RBP20.52■□□□□ 0.88
CCDC88B-201ENST00000301897 TOGARAM1Q9Y4F4 1720 aa20.51■□□□□ 0.87
CCDC88B-201ENST00000301897 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.51■□□□□ 0.87
CCDC88B-201ENST00000301897 EMILIN1Q9Y6C2 1016 aa20.51■□□□□ 0.87
CCDC88B-201ENST00000301897 ANKRD26Q9UPS8 1709 aa20.5■□□□□ 0.87
CCDC88B-201ENST00000301897 SSFA2P28290 1259 aa20.49■□□□□ 0.87
CCDC88B-201ENST00000301897 PIGBQ92521 554 aa20.49■□□□□ 0.87
CCDC88B-201ENST00000301897 CARD14Q9BXL6 1004 aa20.49■□□□□ 0.87
CCDC88B-201ENST00000301897 CEP350Q5VT06 3117 aa20.49■□□□□ 0.87
CCDC88B-201ENST00000301897 UBR3Q6ZT12 1888 aa20.49■□□□□ 0.87
CCDC88B-201ENST00000301897 WASHC2AQ641Q2 1341 aa20.49■□□□□ 0.87
CCDC88B-201ENST00000301897 PPM1GO15355 546 aaPredicted RBP20.48■□□□□ 0.87
CCDC88B-201ENST00000301897 PLEKHG2Q9H7P9 1386 aa20.47■□□□□ 0.87
CCDC88B-201ENST00000301897 MAP2P11137 1827 aaKnown RBP20.46■□□□□ 0.87
CCDC88B-201ENST00000301897 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.46■□□□□ 0.87
CCDC88B-201ENST00000301897 LOC102724428A0A0B4J2F2 783 aa20.46■□□□□ 0.87
CCDC88B-201ENST00000301897 SIK1P57059 783 aa20.46■□□□□ 0.87
CCDC88B-201ENST00000301897 TMOD3Q9NYL9 352 aa20.46■□□□□ 0.87
CCDC88B-201ENST00000301897 ATP10DQ9P241 1426 aa20.45■□□□□ 0.86
CCDC88B-201ENST00000301897 TIMELESSQ9UNS1 1208 aa20.45■□□□□ 0.86
CCDC88B-201ENST00000301897 PHF14O94880 888 aa20.44■□□□□ 0.86
CCDC88B-201ENST00000301897 IFNL2Q8IZJ0 200 aa20.44■□□□□ 0.86
CCDC88B-201ENST00000301897 EYA1Q99502 592 aa20.43■□□□□ 0.86
CCDC88B-201ENST00000301897 GPBP1L1Q9HC44 474 aaPredicted RBP20.43■□□□□ 0.86
CCDC88B-201ENST00000301897 IGSF1Q8N6C5 1336 aa20.42■□□□□ 0.86
CCDC88B-201ENST00000301897 LINC00116Q8NCU8 138 aa20.41■□□□□ 0.86
CCDC88B-201ENST00000301897 ADCY9O60503 1353 aa20.41■□□□□ 0.86
CCDC88B-201ENST00000301897 GNPATO15228 680 aa20.4■□□□□ 0.86
CCDC88B-201ENST00000301897 PHKG2P15735 406 aa20.4■□□□□ 0.86
CCDC88B-201ENST00000301897 ATP6V1AP38606 617 aa20.4■□□□□ 0.86
CCDC88B-201ENST00000301897 TRIM26Q12899 539 aaPredicted RBP20.4■□□□□ 0.86
CCDC88B-201ENST00000301897 AMIGO3Q86WK7 504 aa20.4■□□□□ 0.86
CCDC88B-201ENST00000301897 POLKQ9UBT6 870 aa20.4■□□□□ 0.86
CCDC88B-201ENST00000301897 ASAP1Q9ULH1 1129 aa20.39■□□□□ 0.85
CCDC88B-201ENST00000301897 HSP90AB1P08238 724 aaKnown RBP20.37■□□□□ 0.85
CCDC88B-201ENST00000301897 ZNF831Q5JPB2 1677 aa20.36■□□□□ 0.85
CCDC88B-201ENST00000301897 ERVV-2B6SEH9 535 aa20.36■□□□□ 0.85
CCDC88B-201ENST00000301897 ITPK1Q13572 414 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms