RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 PDS5BQ9NTI5 1447 aa10.18□□□□□ -0.78
NIPBL-201ENST00000282516 KIF18AQ8NI77 898 aa10.18□□□□□ -0.78
NIPBL-201ENST00000282516 FSD2A1L4K1 749 aa10.18□□□□□ -0.78
NIPBL-201ENST00000282516 GNAI2P04899 355 aa10.18□□□□□ -0.78
NIPBL-201ENST00000282516 LARP1BQ659C4 914 aaKnown RBP10.18□□□□□ -0.78
NIPBL-201ENST00000282516 NUP133Q8WUM0 1156 aa10.18□□□□□ -0.78
NIPBL-201ENST00000282516 CGNQ9P2M7 1197 aaKnown RBP10.18□□□□□ -0.78
NIPBL-201ENST00000282516 KRT32Q14532 448 aa10.18□□□□□ -0.78
NIPBL-201ENST00000282516 SRCIN1Q9C0H9 1055 aa10.18□□□□□ -0.78
NIPBL-201ENST00000282516 FILIP1Q7Z7B0 1213 aa10.18□□□□□ -0.78
NIPBL-201ENST00000282516 ZSCAN31Q96LW9 406 aaPredicted RBP10.18□□□□□ -0.78
NIPBL-201ENST00000282516 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.18□□□□□ -0.78
NIPBL-201ENST00000282516 V9GYY5 206 aaPredicted RBP10.18□□□□□ -0.78
NIPBL-201ENST00000282516 ATF3P18847 181 aa10.18□□□□□ -0.78
NIPBL-201ENST00000282516 CFAP100Q494V2 611 aa10.18□□□□□ -0.78
NIPBL-201ENST00000282516 CTNNBL1Q8WYA6 563 aaPredicted RBP10.18□□□□□ -0.78
NIPBL-201ENST00000282516 MAPK8IP2Q13387 824 aaPredicted RBP10.18□□□□□ -0.78
NIPBL-201ENST00000282516 CEP112Q8N8E3 955 aa10.18□□□□□ -0.78
NIPBL-201ENST00000282516 MAP3K11Q16584 847 aa10.17□□□□□ -0.78
NIPBL-201ENST00000282516 CCDC7Q96M83 1385 aa10.17□□□□□ -0.78
NIPBL-201ENST00000282516 LARP1Q6PKG0 1096 aaKnown RBP10.17□□□□□ -0.78
NIPBL-201ENST00000282516 GCC1Q96CN9 775 aa10.17□□□□□ -0.78
NIPBL-201ENST00000282516 DAAM2Q86T65 1068 aa10.17□□□□□ -0.78
NIPBL-201ENST00000282516 NAA15Q9BXJ9 866 aaKnown RBP10.17□□□□□ -0.78
NIPBL-201ENST00000282516 GAS2L2Q8NHY3 880 aa10.17□□□□□ -0.78
NIPBL-201ENST00000282516 CIZ1Q9ULV3 898 aaPredicted RBP10.17□□□□□ -0.78
NIPBL-201ENST00000282516 IKBKGQ9Y6K9 419 aa10.17□□□□□ -0.78
NIPBL-201ENST00000282516 GPRASP1Q5JY77 1395 aa10.17□□□□□ -0.78
NIPBL-201ENST00000282516 BRD4O60885 1362 aaPredicted RBP10.17□□□□□ -0.78
NIPBL-201ENST00000282516 BMS1Q14692 1282 aaKnown RBP10.17□□□□□ -0.78
NIPBL-201ENST00000282516 CTNNA2P26232 953 aa10.17□□□□□ -0.78
NIPBL-201ENST00000282516 HNRNPMP52272 730 aaKnown RBP eCLIP10.17□□□□□ -0.783e-8■■■□□ 15.6
NIPBL-201ENST00000282516 SSX2IPQ9Y2D8 614 aa10.17□□□□□ -0.78
NIPBL-201ENST00000282516 K7ELQ4 463 aaPredicted RBP10.16□□□□□ -0.78
NIPBL-201ENST00000282516 MACROD2A1Z1Q3 448 aa10.16□□□□□ -0.78
NIPBL-201ENST00000282516 AEBP2Q6ZN18 517 aaPredicted RBP10.16□□□□□ -0.78
NIPBL-201ENST00000282516 TDO2P48775 406 aa10.16□□□□□ -0.78
NIPBL-201ENST00000282516 CCT4P50991 539 aaKnown RBP10.16□□□□□ -0.78
NIPBL-201ENST00000282516 FHOD3Q2V2M9 1422 aa10.16□□□□□ -0.78
NIPBL-201ENST00000282516 CTR9Q6PD62 1173 aa10.16□□□□□ -0.78
NIPBL-201ENST00000282516 SCLT1Q96NL6 688 aa10.16□□□□□ -0.78
NIPBL-201ENST00000282516 STK3Q13188 491 aa10.16□□□□□ -0.78
NIPBL-201ENST00000282516 PTPN14Q15678 1187 aa10.16□□□□□ -0.78
NIPBL-201ENST00000282516 PUS7Q96PZ0 661 aaKnown RBP10.15□□□□□ -0.78
NIPBL-201ENST00000282516 ZNF287Q9HBT7 754 aa10.15□□□□□ -0.78
NIPBL-201ENST00000282516 KANK4Q5T7N3 995 aaPredicted RBP10.15□□□□□ -0.78
NIPBL-201ENST00000282516 PPP1R14CQ8TAE6 165 aa10.15□□□□□ -0.78
NIPBL-201ENST00000282516 PLEKHH1Q9ULM0 1364 aa10.15□□□□□ -0.78
NIPBL-201ENST00000282516 RBM5P52756 815 aaKnown RBP eCLIP10.15□□□□□ -0.78
NIPBL-201ENST00000282516 MPHOSPH8Q99549 860 aa10.15□□□□□ -0.78
NIPBL-201ENST00000282516 NSRP1Q9H0G5 558 aaKnown RBP10.15□□□□□ -0.78
NIPBL-201ENST00000282516 FYCO1Q9BQS8 1478 aa10.15□□□□□ -0.78
NIPBL-201ENST00000282516 RAPGEF2Q9Y4G8 1499 aa10.15□□□□□ -0.78
NIPBL-201ENST00000282516 USO1O60763 962 aaKnown RBP10.15□□□□□ -0.79
NIPBL-201ENST00000282516 RAB3IL1Q8TBN0 382 aa10.15□□□□□ -0.79
NIPBL-201ENST00000282516 DHX57Q6P158 1386 aaKnown RBP10.15□□□□□ -0.79
NIPBL-201ENST00000282516 HMOX1P09601 288 aa10.15□□□□□ -0.79
NIPBL-201ENST00000282516 CETN1Q12798 172 aa10.15□□□□□ -0.79
NIPBL-201ENST00000282516 ESPNB1AK53 854 aa10.14□□□□□ -0.79
NIPBL-201ENST00000282516 EHBP1Q8NDI1 1231 aa10.14□□□□□ -0.79
NIPBL-201ENST00000282516 TIGD1Q96MW7 591 aa10.14□□□□□ -0.79
NIPBL-201ENST00000282516 NAP1L3Q99457 506 aaPredicted RBP10.14□□□□□ -0.79
NIPBL-201ENST00000282516 PAFAH1B1P43034 410 aa10.14□□□□□ -0.79
NIPBL-201ENST00000282516 CACNA2D4Q7Z3S7 1137 aa10.14□□□□□ -0.79
NIPBL-201ENST00000282516 BLOC1S2Q6QNY1 142 aa10.14□□□□□ -0.79
NIPBL-201ENST00000282516 RAB34Q9BZG1 259 aa10.14□□□□□ -0.79
NIPBL-201ENST00000282516 PDRG1Q9NUG6 133 aa10.14□□□□□ -0.79
NIPBL-201ENST00000282516 NOL3O60936 208 aaKnown RBP10.13□□□□□ -0.79
NIPBL-201ENST00000282516 ANAPC4Q9UJX5 808 aa10.13□□□□□ -0.79
NIPBL-201ENST00000282516 SMARCC1Q92922 1105 aaPredicted RBP10.13□□□□□ -0.79
NIPBL-201ENST00000282516 TMOD2Q9NZR1 351 aa10.13□□□□□ -0.79
NIPBL-201ENST00000282516 RAI14Q9P0K7 980 aa10.13□□□□□ -0.79
NIPBL-201ENST00000282516 ZSCAN30Q86W11 494 aa10.13□□□□□ -0.79
NIPBL-201ENST00000282516 NEMFO60524 1076 aa10.13□□□□□ -0.79
NIPBL-201ENST00000282516 KIF20AO95235 890 aa10.13□□□□□ -0.79
NIPBL-201ENST00000282516 LRRC45Q96CN5 670 aa10.13□□□□□ -0.79
NIPBL-201ENST00000282516 YEATS4O95619 227 aa10.13□□□□□ -0.79
NIPBL-201ENST00000282516 HSPA4P34932 840 aa10.13□□□□□ -0.79
NIPBL-201ENST00000282516 FERMT2Q96AC1 680 aa10.13□□□□□ -0.79
NIPBL-201ENST00000282516 HMGB2P26583 209 aaKnown RBP10.13□□□□□ -0.79
NIPBL-201ENST00000282516 EHMT1Q9H9B1 1298 aa10.13□□□□□ -0.79
NIPBL-201ENST00000282516 WDR66Q8TBY9 1149 aa10.13□□□□□ -0.79
NIPBL-201ENST00000282516 NUP88Q99567 741 aaPredicted RBP10.13□□□□□ -0.79
NIPBL-201ENST00000282516 IBSPP21815 317 aaPredicted RBP10.13□□□□□ -0.79
NIPBL-201ENST00000282516 ANKS4BQ8N8V4 417 aa10.13□□□□□ -0.79
NIPBL-201ENST00000282516 PLEKHO1Q53GL0 409 aaPredicted RBP10.12□□□□□ -0.79
NIPBL-201ENST00000282516 IPO4Q8TEX9 1081 aaKnown RBP10.12□□□□□ -0.79
NIPBL-201ENST00000282516 MRPS9P82933 396 aaKnown RBP10.12□□□□□ -0.79
NIPBL-201ENST00000282516 TMEM266Q2M3C6 531 aa10.12□□□□□ -0.79
NIPBL-201ENST00000282516 DRC1Q96MC2 740 aa10.12□□□□□ -0.79
NIPBL-201ENST00000282516 GOLGA6L9A6NEM1 432 aa10.12□□□□□ -0.79
NIPBL-201ENST00000282516 TOP1P11387 765 aaKnown RBP10.12□□□□□ -0.79
NIPBL-201ENST00000282516 FAM114A1Q8IWE2 563 aa10.12□□□□□ -0.79
NIPBL-201ENST00000282516 SPECC1Q5M775 1068 aa10.12□□□□□ -0.79
NIPBL-201ENST00000282516 MAATS1Q7Z4T9 603 aa10.12□□□□□ -0.79
NIPBL-201ENST00000282516 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.12□□□□□ -0.79
NIPBL-201ENST00000282516 SPDYE4A6NLX3 237 aa10.12□□□□□ -0.79
NIPBL-201ENST00000282516 WDHD1O75717 1129 aaPredicted RBP10.12□□□□□ -0.79
NIPBL-201ENST00000282516 HLTFQ14527 1009 aaKnown RBP eCLIP10.12□□□□□ -0.792e-6■□□□□ 11.1
NIPBL-201ENST00000282516 GPATCH11Q8N954 259 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms