RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 HSP90AB2PQ58FF8 381 aa13.5□□□□□ -0.25
VPS41-201ENST00000265745 SPON1Q9HCB6 807 aa13.5□□□□□ -0.25
VPS41-201ENST00000265745 RTL1A6NKG5 1358 aa13.49□□□□□ -0.25
VPS41-201ENST00000265745 ZCRB1Q8TBF4 217 aaKnown RBP13.49□□□□□ -0.25
VPS41-201ENST00000265745 PDGFDQ9GZP0 370 aaPredicted RBP13.49□□□□□ -0.25
VPS41-201ENST00000265745 EIF4G2P78344 907 aaKnown RBP eCLIP13.48□□□□□ -0.25
VPS41-201ENST00000265745 SLC15A2Q16348 729 aa13.48□□□□□ -0.25
VPS41-201ENST00000265745 STK32BQ9NY57 414 aa13.48□□□□□ -0.25
VPS41-201ENST00000265745 RGPD5Q99666 1765 aa13.48□□□□□ -0.25
VPS41-201ENST00000265745 HSPA5P11021 654 aaKnown RBP13.47□□□□□ -0.25
VPS41-201ENST00000265745 USHBP1Q8N6Y0 703 aa13.47□□□□□ -0.25
VPS41-201ENST00000265745 NSD3Q9BZ95 1437 aa13.47□□□□□ -0.25
VPS41-201ENST00000265745 INSRP06213 1382 aa13.46□□□□□ -0.25
VPS41-201ENST00000265745 KIF24Q5T7B8 1368 aa13.46□□□□□ -0.25
VPS41-201ENST00000265745 CAPN15O75808 1086 aa13.46□□□□□ -0.25
VPS41-201ENST00000265745 PRIM1P49642 420 aaKnown RBP13.46□□□□□ -0.25
VPS41-201ENST00000265745 EMILIN1Q9Y6C2 1016 aa13.46□□□□□ -0.25
VPS41-201ENST00000265745 RREB1Q92766 1687 aa13.46□□□□□ -0.26
VPS41-201ENST00000265745 FLT4P35916 1363 aa13.45□□□□□ -0.26
VPS41-201ENST00000265745 CGNL1Q0VF96 1302 aa13.45□□□□□ -0.26
VPS41-201ENST00000265745 RAPGEF4Q8WZA2 1011 aa13.45□□□□□ -0.26
VPS41-201ENST00000265745 POLR3GLQ9BT43 218 aa13.45□□□□□ -0.26
VPS41-201ENST00000265745 LRRC4BQ9NT99 713 aa13.45□□□□□ -0.26
VPS41-201ENST00000265745 ZBTB7AO95365 584 aa13.44□□□□□ -0.26
VPS41-201ENST00000265745 IFNLR1Q8IU57 520 aaPredicted RBP13.44□□□□□ -0.26
VPS41-201ENST00000265745 SYTL4Q96C24 671 aaPredicted RBP13.44□□□□□ -0.26
VPS41-201ENST00000265745 RNF39Q9H2S5 420 aa13.44□□□□□ -0.26
VPS41-201ENST00000265745 PPP1R1BQ9UD71 204 aaPredicted RBP13.44□□□□□ -0.26
VPS41-201ENST00000265745 NUP188Q5SRE5 1749 aa13.44□□□□□ -0.26
VPS41-201ENST00000265745 WASHC2AQ641Q2 1341 aa13.43□□□□□ -0.26
VPS41-201ENST00000265745 PPM1GO15355 546 aaPredicted RBP13.43□□□□□ -0.26
VPS41-201ENST00000265745 TATP17735 454 aaPredicted RBP13.43□□□□□ -0.26
VPS41-201ENST00000265745 SLC27A3Q5K4L6 730 aa13.43□□□□□ -0.26
VPS41-201ENST00000265745 SMG6Q86US8 1419 aaKnown RBP13.43□□□□□ -0.26
VPS41-201ENST00000265745 MEGF6O75095 1541 aa13.43□□□□□ -0.26
VPS41-201ENST00000265745 LTN1O94822 1766 aa13.43□□□□□ -0.26
VPS41-201ENST00000265745 PTGER2P43116 358 aa13.42□□□□□ -0.26
VPS41-201ENST00000265745 PANK3Q9H999 370 aa13.42□□□□□ -0.26
VPS41-201ENST00000265745 POLKQ9UBT6 870 aa13.42□□□□□ -0.26
VPS41-201ENST00000265745 WNK3Q9BYP7 1800 aa13.41□□□□□ -0.26
VPS41-201ENST00000265745 ZNF827Q17R98 1081 aa13.41□□□□□ -0.26
VPS41-201ENST00000265745 AKT1S1Q96B36 256 aa13.41□□□□□ -0.26
VPS41-201ENST00000265745 MTFR1LQ9H019 292 aa13.41□□□□□ -0.26
VPS41-201ENST00000265745 SBF2Q86WG5 1849 aa13.41□□□□□ -0.26
VPS41-201ENST00000265745 RGPD3A6NKT7 1758 aaPredicted RBP13.4□□□□□ -0.26
VPS41-201ENST00000265745 RGPD4Q7Z3J3 1758 aa13.4□□□□□ -0.26
VPS41-201ENST00000265745 CYP27B1O15528 508 aa13.4□□□□□ -0.26
VPS41-201ENST00000265745 NSD2O96028 1365 aa13.4□□□□□ -0.26
VPS41-201ENST00000265745 TNNT2P45379 298 aaPredicted RBP13.39□□□□□ -0.27
VPS41-201ENST00000265745 KCNQ4P56696 695 aa13.39□□□□□ -0.27
VPS41-201ENST00000265745 EYA1Q99502 592 aa13.39□□□□□ -0.27
VPS41-201ENST00000265745 SGIP1Q9BQI5 828 aa13.39□□□□□ -0.27
VPS41-201ENST00000265745 PCDH11XQ9BZA7 1347 aa13.39□□□□□ -0.27
VPS41-201ENST00000265745 PCDH11YQ9BZA8 1340 aa13.39□□□□□ -0.27
VPS41-201ENST00000265745 PLCB2Q00722 1185 aa13.38□□□□□ -0.27
VPS41-201ENST00000265745 NHSQ6T4R5 1651 aa13.37□□□□□ -0.27
VPS41-201ENST00000265745 CCNL1Q9UK58 526 aaPredicted RBP13.37□□□□□ -0.27
VPS41-201ENST00000265745 FAM208AQ9UK61 1670 aaKnown RBP13.37□□□□□ -0.27
VPS41-201ENST00000265745 EIF4A2Q14240 407 aaKnown RBP13.36□□□□□ -0.27
VPS41-201ENST00000265745 NKX1-1Q15270 411 aaPredicted RBP13.36□□□□□ -0.27
VPS41-201ENST00000265745 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.36□□□□□ -0.275e-7■■■□□ 17.1
VPS41-201ENST00000265745 TFCP2L1Q9NZI6 479 aa13.36□□□□□ -0.27
VPS41-201ENST00000265745 SPG7Q9UQ90 795 aa13.36□□□□□ -0.27
VPS41-201ENST00000265745 MPRIPQ6WCQ1 1025 aa13.35□□□□□ -0.27
VPS41-201ENST00000265745 SLC16A10Q8TF71 515 aa13.35□□□□□ -0.27
VPS41-201ENST00000265745 NCAPD2Q15021 1401 aa13.35□□□□□ -0.27
VPS41-201ENST00000265745 ARXQ96QS3 562 aa13.34□□□□□ -0.27
VPS41-201ENST00000265745 SYT17Q9BSW7 474 aa13.34□□□□□ -0.27
VPS41-201ENST00000265745 FHDC1Q9C0D6 1143 aaPredicted RBP13.34□□□□□ -0.27
VPS41-201ENST00000265745 PNPLA7Q6ZV29 1317 aa13.34□□□□□ -0.27
VPS41-201ENST00000265745 MYOM1P52179 1685 aa13.34□□□□□ -0.27
VPS41-201ENST00000265745 MORC1Q86VD1 984 aa13.33□□□□□ -0.28
VPS41-201ENST00000265745 PIGBQ92521 554 aa13.33□□□□□ -0.28
VPS41-201ENST00000265745 KNSTRNQ9Y448 316 aa13.33□□□□□ -0.28
VPS41-201ENST00000265745 CASZ1Q86V15 1759 aa13.32□□□□□ -0.28
VPS41-201ENST00000265745 HMGB2P26583 209 aaKnown RBP13.31□□□□□ -0.28
VPS41-201ENST00000265745 IFNL2Q8IZJ0 200 aa13.31□□□□□ -0.28
VPS41-201ENST00000265745 SMARCC1Q92922 1105 aaPredicted RBP13.31□□□□□ -0.28
VPS41-201ENST00000265745 ZBTB12Q9Y330 459 aaPredicted RBP13.31□□□□□ -0.28
VPS41-201ENST00000265745 IGSF1Q8N6C5 1336 aa13.31□□□□□ -0.28
VPS41-201ENST00000265745 PAPPAQ13219 1627 aa13.31□□□□□ -0.28
VPS41-201ENST00000265745 PALLDQ8WX93 1383 aa13.31□□□□□ -0.28
VPS41-201ENST00000265745 BTAF1O14981 1849 aa13.3□□□□□ -0.28
VPS41-201ENST00000265745 ABCB7O75027 752 aa13.3□□□□□ -0.28
VPS41-201ENST00000265745 PHKG2P15735 406 aa13.3□□□□□ -0.28
VPS41-201ENST00000265745 C1QBPQ07021 282 aaKnown RBP13.3□□□□□ -0.28
VPS41-201ENST00000265745 COL23A1Q86Y22 540 aaPredicted RBP13.3□□□□□ -0.28
VPS41-201ENST00000265745 KIF7Q2M1P5 1343 aa13.3□□□□□ -0.28
VPS41-201ENST00000265745 YY1P25490 414 aa13.29□□□□□ -0.28
VPS41-201ENST00000265745 RGPD2P0DJD1 1756 aa13.28□□□□□ -0.28
VPS41-201ENST00000265745 KIF20BQ96Q89 1820 aa13.28□□□□□ -0.28
VPS41-201ENST00000265745 PER1O15534 1290 aaPredicted RBP13.28□□□□□ -0.28
VPS41-201ENST00000265745 POLD1P28340 1107 aa13.28□□□□□ -0.28
VPS41-201ENST00000265745 TMOD3Q9NYL9 352 aa13.28□□□□□ -0.28
VPS41-201ENST00000265745 PLEKHO1Q53GL0 409 aaPredicted RBP13.27□□□□□ -0.29
VPS41-201ENST00000265745 ASAP1Q9ULH1 1129 aa13.27□□□□□ -0.29
VPS41-201ENST00000265745 MAP3K5Q99683 1374 aa13.27□□□□□ -0.29
VPS41-201ENST00000265745 PLEKHG2Q9H7P9 1386 aa13.27□□□□□ -0.29
VPS41-201ENST00000265745 KAT6BQ8WYB5 2073 aa13.27□□□□□ -0.29
VPS41-201ENST00000265745 LOC102724428A0A0B4J2F2 783 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms