RNA–Protein interactions for RNA: ENST00000265619.6

VAPB-201, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,596 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-201ENST00000265619 NGEFQ8N5V2 710 aa10.7□□□□□ -0.7
VAPB-201ENST00000265619 CTNNA3Q9UI47 895 aa10.7□□□□□ -0.7
VAPB-201ENST00000265619 MADDQ8WXG6 1647 aa10.7□□□□□ -0.7
VAPB-201ENST00000265619 KCNF1Q9H3M0 494 aa10.7□□□□□ -0.7
VAPB-201ENST00000265619 SPTLC3Q9NUV7 552 aa10.7□□□□□ -0.7
VAPB-201ENST00000265619 GPRASP1Q5JY77 1395 aa10.7□□□□□ -0.7
VAPB-201ENST00000265619 CLTCQ00610 1675 aaKnown RBP10.69□□□□□ -0.7
VAPB-201ENST00000265619 AP5Z1O43299 807 aa10.69□□□□□ -0.7
VAPB-201ENST00000265619 ITPRIPQ8IWB1 547 aa10.69□□□□□ -0.7
VAPB-201ENST00000265619 EVC2Q86UK5 1308 aa10.69□□□□□ -0.7
VAPB-201ENST00000265619 PIK3C2GO75747 1445 aa10.69□□□□□ -0.7
VAPB-201ENST00000265619 TRIM27P14373 513 aa10.69□□□□□ -0.7
VAPB-201ENST00000265619 CARD14Q9BXL6 1004 aa10.69□□□□□ -0.7
VAPB-201ENST00000265619 GDPD2Q9HCC8 539 aa10.69□□□□□ -0.7
VAPB-201ENST00000265619 OGFRQ9NZT2 677 aa10.69□□□□□ -0.7
VAPB-201ENST00000265619 SIGLEC1Q9BZZ2 1709 aa10.69□□□□□ -0.7
VAPB-201ENST00000265619 VWDEQ8N2E2 1590 aa10.69□□□□□ -0.7
VAPB-201ENST00000265619 IRX3P78415 501 aaPredicted RBP10.69□□□□□ -0.7
VAPB-201ENST00000265619 HDAC1Q13547 482 aaPredicted RBP10.69□□□□□ -0.7
VAPB-201ENST00000265619 DZIP1LQ8IYY4 767 aaKnown RBP10.69□□□□□ -0.7
VAPB-201ENST00000265619 TSR2Q969E8 191 aaKnown RBP10.69□□□□□ -0.7
VAPB-201ENST00000265619 SMARCA5O60264 1052 aaPredicted RBP10.68□□□□□ -0.7
VAPB-201ENST00000265619 GADD45BO75293 160 aaPredicted RBP10.68□□□□□ -0.7
VAPB-201ENST00000265619 TERF2Q15554 542 aa10.68□□□□□ -0.7
VAPB-201ENST00000265619 U2SURPO15042 1029 aaKnown RBP10.68□□□□□ -0.7
VAPB-201ENST00000265619 CTIFO43310 598 aaKnown RBP10.68□□□□□ -0.7
VAPB-201ENST00000265619 NUCB1Q02818 461 aa10.68□□□□□ -0.7
VAPB-201ENST00000265619 CABP1Q9NZU7 370 aa10.68□□□□□ -0.7
VAPB-201ENST00000265619 TULP2O00295 520 aa10.67□□□□□ -0.7
VAPB-201ENST00000265619 ADCY5O95622 1261 aa10.67□□□□□ -0.7
VAPB-201ENST00000265619 CHRM1P11229 460 aaPredicted RBP10.67□□□□□ -0.7
VAPB-201ENST00000265619 SYNMO15061 1565 aa10.67□□□□□ -0.7
VAPB-201ENST00000265619 CDK19Q9BWU1 502 aa10.67□□□□□ -0.7
VAPB-201ENST00000265619 TSPY26PQ9H489 355 aa10.67□□□□□ -0.7
VAPB-201ENST00000265619 RPGRIP1LQ68CZ1 1315 aa10.67□□□□□ -0.7
VAPB-201ENST00000265619 TNRQ92752 1358 aa10.67□□□□□ -0.7
VAPB-201ENST00000265619 MYO5BQ9ULV0 1848 aa10.66□□□□□ -0.7
VAPB-201ENST00000265619 TEX2Q8IWB9 1127 aa10.66□□□□□ -0.7
VAPB-201ENST00000265619 TCP11L2Q8N4U5 519 aa10.66□□□□□ -0.7
VAPB-201ENST00000265619 TMEM57Q8N5G2 664 aa10.66□□□□□ -0.7
VAPB-201ENST00000265619 EID1Q9Y6B2 187 aa10.66□□□□□ -0.7
VAPB-201ENST00000265619 CHD1LQ86WJ1 897 aa10.66□□□□□ -0.7
VAPB-201ENST00000265619 TIGD1Q96MW7 591 aa10.66□□□□□ -0.7
VAPB-201ENST00000265619 BCCIPQ9P287 314 aaKnown RBP eCLIP10.66□□□□□ -0.74e-12■■■■■ 38.6
VAPB-201ENST00000265619 DDX41Q9UJV9 622 aaKnown RBP10.66□□□□□ -0.7
VAPB-201ENST00000265619 RIMS2Q9UQ26 1411 aa10.66□□□□□ -0.7
VAPB-201ENST00000265619 ASXL1Q8IXJ9 1541 aa10.66□□□□□ -0.7
VAPB-201ENST00000265619 C1orf115Q9H7X2 142 aa10.66□□□□□ -0.7
VAPB-201ENST00000265619 NSD3Q9BZ95 1437 aa10.65□□□□□ -0.7
VAPB-201ENST00000265619 ERVK-7P63135 1459 aa10.65□□□□□ -0.7
VAPB-201ENST00000265619 LTKP29376 864 aa10.65□□□□□ -0.7
VAPB-201ENST00000265619 ZKSCAN2Q63HK3 967 aa10.65□□□□□ -0.7
VAPB-201ENST00000265619 DNAJC2Q99543 621 aaKnown RBP10.65□□□□□ -0.7
VAPB-201ENST00000265619 NUCB2P80303 420 aa10.65□□□□□ -0.7
VAPB-201ENST00000265619 GABPB1Q06547 395 aaPredicted RBP10.65□□□□□ -0.7
VAPB-201ENST00000265619 FEZ1Q99689 392 aa10.65□□□□□ -0.7
VAPB-201ENST00000265619 SLC20A2Q08357 652 aa10.65□□□□□ -0.71
VAPB-201ENST00000265619 KIAA1524Q8TCG1 905 aa10.65□□□□□ -0.71
VAPB-201ENST00000265619 BMP2KLQ5H9B9 411 aa10.64□□□□□ -0.71
VAPB-201ENST00000265619 SPC24Q8NBT2 197 aa10.64□□□□□ -0.71
VAPB-201ENST00000265619 TMX1Q9H3N1 280 aa10.64□□□□□ -0.71
VAPB-201ENST00000265619 PLCB2Q00722 1185 aa10.64□□□□□ -0.71
VAPB-201ENST00000265619 ANKRD45Q5TZF3 282 aa10.64□□□□□ -0.71
VAPB-201ENST00000265619 ADGRB3O60242 1522 aa10.64□□□□□ -0.71
VAPB-201ENST00000265619 HCLS1P14317 486 aaPredicted RBP10.64□□□□□ -0.71
VAPB-201ENST00000265619 NUTM2GQ5VZR2 741 aa10.64□□□□□ -0.71
VAPB-201ENST00000265619 KIF18AQ8NI77 898 aa10.64□□□□□ -0.71
VAPB-201ENST00000265619 ZBTB40Q9NUA8 1239 aa10.64□□□□□ -0.71
VAPB-201ENST00000265619 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.64□□□□□ -0.71
VAPB-201ENST00000265619 V9GYY5 206 aaPredicted RBP10.64□□□□□ -0.71
VAPB-201ENST00000265619 TCHHQ07283 1943 aa10.63□□□□□ -0.71
VAPB-201ENST00000265619 SSH1Q8WYL5 1049 aa10.63□□□□□ -0.71
VAPB-201ENST00000265619 FEZ2Q9UHY8 353 aaPredicted RBP10.63□□□□□ -0.71
VAPB-201ENST00000265619 MYOM1P52179 1685 aa10.63□□□□□ -0.71
VAPB-201ENST00000265619 PRR29P0C7W0 189 aa10.63□□□□□ -0.71
VAPB-201ENST00000265619 GSPT1P15170 499 aaKnown RBP10.63□□□□□ -0.71
VAPB-201ENST00000265619 NOB1Q9ULX3 412 aaKnown RBP10.63□□□□□ -0.71
VAPB-201ENST00000265619 LMTK2Q8IWU2 1503 aa10.63□□□□□ -0.71
VAPB-201ENST00000265619 NPC1L1Q9UHC9 1359 aa10.63□□□□□ -0.71
VAPB-201ENST00000265619 HDGFP51858 240 aaKnown RBP10.62□□□□□ -0.71
VAPB-201ENST00000265619 NFATC2IPQ8NCF5 419 aa10.62□□□□□ -0.71
VAPB-201ENST00000265619 SMC4Q9NTJ3 1288 aa10.62□□□□□ -0.71
VAPB-201ENST00000265619 MORC2Q9Y6X9 1032 aaPredicted RBP10.62□□□□□ -0.71
VAPB-201ENST00000265619 MTHFSP49914 203 aa10.62□□□□□ -0.71
VAPB-201ENST00000265619 U2AF1L5P0DN76 240 aaPredicted RBP10.62□□□□□ -0.71
VAPB-201ENST00000265619 U2AF1Q01081 240 aaKnown RBP eCLIP10.62□□□□□ -0.71
VAPB-201ENST00000265619 LMOD2Q6P5Q4 547 aa10.62□□□□□ -0.71
VAPB-201ENST00000265619 ZRANB1Q9UGI0 708 aa10.62□□□□□ -0.71
VAPB-201ENST00000265619 SHPRHQ149N8 1683 aa10.61□□□□□ -0.71
VAPB-201ENST00000265619 HDGFL2Q7Z4V5 671 aaPredicted RBP10.61□□□□□ -0.71
VAPB-201ENST00000265619 CFAP44Q96MT7 982 aa10.61□□□□□ -0.71
VAPB-201ENST00000265619 DNAJC5Q9H3Z4 198 aa10.61□□□□□ -0.71
VAPB-201ENST00000265619 METP08581 1390 aa10.61□□□□□ -0.71
VAPB-201ENST00000265619 PREX1Q8TCU6 1659 aa10.61□□□□□ -0.71
VAPB-201ENST00000265619 PIK3C2BO00750 1634 aa10.61□□□□□ -0.71
VAPB-201ENST00000265619 HNRNPH2P55795 449 aaKnown RBP10.61□□□□□ -0.71
VAPB-201ENST00000265619 EXOSC9Q06265 439 aaKnown RBP10.61□□□□□ -0.71
VAPB-201ENST00000265619 USP26Q9BXU7 913 aa10.61□□□□□ -0.71
VAPB-201ENST00000265619 KMT5BQ4FZB7 885 aa10.61□□□□□ -0.71
VAPB-201ENST00000265619 MYOM2P54296 1465 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms