RNA–Protein interactions for RNA: ENST00000247020.8

SDF2-201, Transcript of stromal cell derived factor 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDF2, Length 1,568 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-201ENST00000247020 LRRC59Q96AG4 307 aaKnown RBP18.32■□□□□ 0.52
SDF2-201ENST00000247020 BCAR3O75815 825 aa18.31■□□□□ 0.52
SDF2-201ENST00000247020 HAP1P54257 671 aaPredicted RBP18.31■□□□□ 0.52
SDF2-201ENST00000247020 THUMPD2Q9BTF0 503 aaKnown RBP18.31■□□□□ 0.52
SDF2-201ENST00000247020 MBIPQ9NS73 344 aa18.31■□□□□ 0.52
SDF2-201ENST00000247020 BABAM1Q9NWV8 329 aa18.31■□□□□ 0.52
SDF2-201ENST00000247020 OVOS2A0A0G2JMS6 1433 aa18.31■□□□□ 0.52
SDF2-201ENST00000247020 PHLPP1O60346 1717 aa18.31■□□□□ 0.52
SDF2-201ENST00000247020 CHL1O00533 1208 aa18.3■□□□□ 0.52
SDF2-201ENST00000247020 PLIN1O60240 522 aa18.3■□□□□ 0.52
SDF2-201ENST00000247020 PLEKHO1Q53GL0 409 aaPredicted RBP18.3■□□□□ 0.52
SDF2-201ENST00000247020 USHBP1Q8N6Y0 703 aa18.3■□□□□ 0.52
SDF2-201ENST00000247020 ADAMTS7Q9UKP4 1686 aa18.3■□□□□ 0.52
SDF2-201ENST00000247020 PKD1L3Q7Z443 1732 aa18.3■□□□□ 0.52
SDF2-201ENST00000247020 BRPF1P55201 1214 aaPredicted RBP18.3■□□□□ 0.52
SDF2-201ENST00000247020 COL16A1Q07092 1604 aaPredicted RBP18.29■□□□□ 0.52
SDF2-201ENST00000247020 PARP4Q9UKK3 1724 aaKnown RBP18.29■□□□□ 0.52
SDF2-201ENST00000247020 PLEKHG5O94827 1062 aa18.29■□□□□ 0.52
SDF2-201ENST00000247020 DCTN1Q14203 1278 aa18.29■□□□□ 0.52
SDF2-201ENST00000247020 LAS1LQ9Y4W2 734 aaKnown RBP18.29■□□□□ 0.52
SDF2-201ENST00000247020 COL14A1Q05707 1796 aaKnown RBP18.28■□□□□ 0.52
SDF2-201ENST00000247020 MS4A1P11836 297 aa18.28■□□□□ 0.52
SDF2-201ENST00000247020 MCM10Q7L590 875 aa18.28■□□□□ 0.52
SDF2-201ENST00000247020 PRDM11Q9NQV5 511 aa18.28■□□□□ 0.52
SDF2-201ENST00000247020 CEMIPQ8WUJ3 1361 aa18.28■□□□□ 0.52
SDF2-201ENST00000247020 AKAP4Q5JQC9 854 aa18.27■□□□□ 0.52
SDF2-201ENST00000247020 EXOC6Q8TAG9 804 aa18.27■□□□□ 0.52
SDF2-201ENST00000247020 COL5A2P05997 1499 aaPredicted RBP18.27■□□□□ 0.52
SDF2-201ENST00000247020 KIF16BQ96L93 1317 aa18.27■□□□□ 0.51
SDF2-201ENST00000247020 TOM1O60784 492 aa18.26■□□□□ 0.51
SDF2-201ENST00000247020 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.26■□□□□ 0.51
SDF2-201ENST00000247020 CANXP27824 592 aaKnown RBP18.25■□□□□ 0.51
SDF2-201ENST00000247020 CRBNQ96SW2 442 aa18.25■□□□□ 0.51
SDF2-201ENST00000247020 KDM3BQ7LBC6 1761 aa18.25■□□□□ 0.51
SDF2-201ENST00000247020 WDR17Q8IZU2 1322 aa18.25■□□□□ 0.51
SDF2-201ENST00000247020 SIPA1L3O60292 1781 aaPredicted RBP18.25■□□□□ 0.51
SDF2-201ENST00000247020 VAMP4O75379 141 aa18.25■□□□□ 0.51
SDF2-201ENST00000247020 AAMPQ13685 434 aa18.25■□□□□ 0.51
SDF2-201ENST00000247020 SMC4Q9NTJ3 1288 aa18.25■□□□□ 0.51
SDF2-201ENST00000247020 SOS1Q07889 1333 aaPredicted RBP18.24■□□□□ 0.51
SDF2-201ENST00000247020 SCN11AQ9UI33 1791 aa18.24■□□□□ 0.51
SDF2-201ENST00000247020 CHRNA2Q15822 529 aa18.24■□□□□ 0.51
SDF2-201ENST00000247020 RAPGEF4Q8WZA2 1011 aa18.24■□□□□ 0.51
SDF2-201ENST00000247020 NLRP2Q9NX02 1062 aa18.24■□□□□ 0.51
SDF2-201ENST00000247020 CACNA1FO60840 1977 aa18.23■□□□□ 0.51
SDF2-201ENST00000247020 CSB-PGBD3P0DP91 1061 aa18.23■□□□□ 0.51
SDF2-201ENST00000247020 TWISTNBQ3B726 338 aaPredicted RBP18.23■□□□□ 0.51
SDF2-201ENST00000247020 C20orf194Q5TEA3 1177 aa18.23■□□□□ 0.51
SDF2-201ENST00000247020 ZKSCAN2Q63HK3 967 aa18.23■□□□□ 0.51
SDF2-201ENST00000247020 ZNF530Q6P9A1 599 aaPredicted RBP18.23■□□□□ 0.51
SDF2-201ENST00000247020 SSH1Q8WYL5 1049 aa18.23■□□□□ 0.51
SDF2-201ENST00000247020 CCDC136Q96JN2 1154 aa18.23■□□□□ 0.51
SDF2-201ENST00000247020 TATP17735 454 aaPredicted RBP18.22■□□□□ 0.51
SDF2-201ENST00000247020 C1orf141Q5JVX7 400 aa18.22■□□□□ 0.51
SDF2-201ENST00000247020 IPO8O15397 1037 aaKnown RBP18.21■□□□□ 0.51
SDF2-201ENST00000247020 TAF7Q15545 349 aaPredicted RBP18.21■□□□□ 0.51
SDF2-201ENST00000247020 IL17REQ8NFR9 667 aa18.21■□□□□ 0.51
SDF2-201ENST00000247020 MEGF6O75095 1541 aa18.21■□□□□ 0.51
SDF2-201ENST00000247020 B4GALNT3Q6L9W6 998 aa18.21■□□□□ 0.51
SDF2-201ENST00000247020 FRAT1Q92837 279 aaPredicted RBP18.21■□□□□ 0.51
SDF2-201ENST00000247020 TSPYL4Q9UJ04 414 aa18.21■□□□□ 0.51
SDF2-201ENST00000247020 SPG7Q9UQ90 795 aa18.21■□□□□ 0.51
SDF2-201ENST00000247020 C8orf58Q8NAV2 365 aa18.2■□□□□ 0.5
SDF2-201ENST00000247020 ARHGAP45Q92619 1136 aa18.2■□□□□ 0.5
SDF2-201ENST00000247020 TSPYL6Q8N831 410 aa18.19■□□□□ 0.5
SDF2-201ENST00000247020 BCL2L13Q9BXK5 485 aa18.19■□□□□ 0.5
SDF2-201ENST00000247020 PLCH1Q4KWH8 1693 aa18.18■□□□□ 0.5
SDF2-201ENST00000247020 ATF7IPQ6VMQ6 1270 aa18.18■□□□□ 0.5
SDF2-201ENST00000247020 CARD10Q9BWT7 1032 aa18.18■□□□□ 0.5
SDF2-201ENST00000247020 MRPL50Q8N5N7 158 aaKnown RBP18.17■□□□□ 0.5
SDF2-201ENST00000247020 RNMTO43148 476 aaKnown RBP18.17■□□□□ 0.5
SDF2-201ENST00000247020 DZIP1LQ8IYY4 767 aaKnown RBP18.17■□□□□ 0.5
SDF2-201ENST00000247020 NWD2Q9ULI1 1742 aa18.15■□□□□ 0.5
SDF2-201ENST00000247020 MRC1P22897 1456 aa18.15■□□□□ 0.5
SDF2-201ENST00000247020 HSP90AB1P08238 724 aaKnown RBP18.15■□□□□ 0.5
SDF2-201ENST00000247020 TEFQ10587 303 aa18.15■□□□□ 0.5
SDF2-201ENST00000247020 TOM1L2Q6ZVM7 507 aa18.15■□□□□ 0.5
SDF2-201ENST00000247020 CHMP4AQ9BY43 222 aa18.15■□□□□ 0.5
SDF2-201ENST00000247020 NOB1Q9ULX3 412 aaKnown RBP18.15■□□□□ 0.5
SDF2-201ENST00000247020 WNK3Q9BYP7 1800 aa18.15■□□□□ 0.5
SDF2-201ENST00000247020 SHANK3Q9BYB0 1731 aa18.14■□□□□ 0.49
SDF2-201ENST00000247020 TRIM27P14373 513 aa18.14■□□□□ 0.49
SDF2-201ENST00000247020 FTSJ3Q8IY81 847 aaKnown RBP18.14■□□□□ 0.49
SDF2-201ENST00000247020 IFNL2Q8IZJ0 200 aa18.14■□□□□ 0.49
SDF2-201ENST00000247020 PANK1Q8TE04 598 aa18.14■□□□□ 0.49
SDF2-201ENST00000247020 NRAPQ86VF7 1730 aa18.14■□□□□ 0.49
SDF2-201ENST00000247020 HOXB7P09629 217 aa18.13■□□□□ 0.49
SDF2-201ENST00000247020 MVPQ14764 893 aaKnown RBP18.13■□□□□ 0.49
SDF2-201ENST00000247020 LGR6Q9HBX8 967 aa18.13■□□□□ 0.49
SDF2-201ENST00000247020 PHKG2P15735 406 aa18.13■□□□□ 0.49
SDF2-201ENST00000247020 UBAP1LF5GYI3 381 aa18.12■□□□□ 0.49
SDF2-201ENST00000247020 ELL2O00472 640 aaPredicted RBP18.12■□□□□ 0.49
SDF2-201ENST00000247020 EVA1CP58658 441 aa18.12■□□□□ 0.49
SDF2-201ENST00000247020 MPRIPQ6WCQ1 1025 aa18.12■□□□□ 0.49
SDF2-201ENST00000247020 API5Q9BZZ5 524 aaKnown RBP18.12■□□□□ 0.49
SDF2-201ENST00000247020 COG6Q9Y2V7 657 aa18.12■□□□□ 0.49
SDF2-201ENST00000247020 PCDH11XQ9BZA7 1347 aa18.11■□□□□ 0.49
SDF2-201ENST00000247020 PCDH11YQ9BZA8 1340 aa18.11■□□□□ 0.49
SDF2-201ENST00000247020 RLBP1P12271 317 aa18.11■□□□□ 0.49
SDF2-201ENST00000247020 CLUAP1Q96AJ1 413 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms