RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 NSD3Q9BZ95 1437 aa22.42■■□□□ 1.18
SMPD3-201ENST00000219334 IL1RAPL2Q9NP60 686 aa22.42■■□□□ 1.18
SMPD3-201ENST00000219334 FAM13BQ9NYF5 915 aa22.42■■□□□ 1.18
SMPD3-201ENST00000219334 ZNHIT6Q9NWK9 470 aaKnown RBP22.41■■□□□ 1.18
SMPD3-201ENST00000219334 FANCIQ9NVI1 1328 aa22.41■■□□□ 1.18
SMPD3-201ENST00000219334 KRT32Q14532 448 aa22.41■■□□□ 1.18
SMPD3-201ENST00000219334 MPRIPQ6WCQ1 1025 aa22.41■■□□□ 1.18
SMPD3-201ENST00000219334 ME1P48163 572 aa22.41■■□□□ 1.18
SMPD3-201ENST00000219334 TMPOP42166 694 aaKnown RBP22.4■■□□□ 1.18
SMPD3-201ENST00000219334 HSP90B2PQ58FF3 399 aa22.4■■□□□ 1.18
SMPD3-201ENST00000219334 DUSP27Q5VZP5 1158 aa22.4■■□□□ 1.18
SMPD3-201ENST00000219334 DACH1Q9UI36 760 aa22.4■■□□□ 1.18
SMPD3-201ENST00000219334 EXOC5O00471 708 aa22.4■■□□□ 1.18
SMPD3-201ENST00000219334 HSP90AB3PQ58FF7 597 aa22.4■■□□□ 1.18
SMPD3-201ENST00000219334 SSBP05455 408 aaKnown RBP eCLIP22.39■■□□□ 1.17
SMPD3-201ENST00000219334 PRPF40AO75400 957 aaKnown RBP22.39■■□□□ 1.17
SMPD3-201ENST00000219334 CRACR2BQ8N4Y2 399 aaPredicted RBP22.39■■□□□ 1.17
SMPD3-201ENST00000219334 ANKIB1Q9P2G1 1089 aa22.39■■□□□ 1.17
SMPD3-201ENST00000219334 HSP90AA2PQ14568 343 aaPredicted RBP22.38■■□□□ 1.17
SMPD3-201ENST00000219334 CHD1LQ86WJ1 897 aa22.38■■□□□ 1.17
SMPD3-201ENST00000219334 LRPPRCP42704 1394 aaKnown RBP22.38■■□□□ 1.17
SMPD3-201ENST00000219334 TAF7Q15545 349 aaPredicted RBP22.38■■□□□ 1.17
SMPD3-201ENST00000219334 CAVIN1Q6NZI2 390 aaKnown RBP22.38■■□□□ 1.17
SMPD3-201ENST00000219334 IMMTQ16891 758 aaKnown RBP22.38■■□□□ 1.17
SMPD3-201ENST00000219334 CWC27Q6UX04 472 aaKnown RBP22.38■■□□□ 1.17
SMPD3-201ENST00000219334 MIS18AQ9NYP9 233 aa22.38■■□□□ 1.17
SMPD3-201ENST00000219334 LARP1BQ659C4 914 aaKnown RBP22.38■■□□□ 1.17
SMPD3-201ENST00000219334 USP5P45974 858 aa22.37■■□□□ 1.17
SMPD3-201ENST00000219334 LUC7LQ9NQ29 371 aaKnown RBP22.37■■□□□ 1.17
SMPD3-201ENST00000219334 MCM10Q7L590 875 aa22.37■■□□□ 1.17
SMPD3-201ENST00000219334 TANGO6Q9C0B7 1094 aa22.37■■□□□ 1.17
SMPD3-201ENST00000219334 SYNJ1O43426 1573 aa22.37■■□□□ 1.17
SMPD3-201ENST00000219334 CCDC141Q6ZP82 1450 aa22.37■■□□□ 1.17
SMPD3-201ENST00000219334 NASPP49321 788 aaPredicted RBP22.37■■□□□ 1.17
SMPD3-201ENST00000219334 WASF1Q92558 559 aa22.37■■□□□ 1.17
SMPD3-201ENST00000219334 CCDC39Q9UFE4 941 aa22.37■■□□□ 1.17
SMPD3-201ENST00000219334 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.37■■□□□ 1.17
SMPD3-201ENST00000219334 POLR3DP05423 398 aaPredicted RBP22.37■■□□□ 1.17
SMPD3-201ENST00000219334 PPP6R1Q9UPN7 881 aa22.36■■□□□ 1.17
SMPD3-201ENST00000219334 WDR33Q9C0J8 1336 aaKnown RBP22.36■■□□□ 1.17
SMPD3-201ENST00000219334 KRT85P78386 507 aa22.36■■□□□ 1.17
SMPD3-201ENST00000219334 CEBPAP49715 358 aaPredicted RBP22.36■■□□□ 1.17
SMPD3-201ENST00000219334 PDRG1Q9NUG6 133 aa22.36■■□□□ 1.17
SMPD3-201ENST00000219334 ZSCAN31Q96LW9 406 aaPredicted RBP22.35■■□□□ 1.17
SMPD3-201ENST00000219334 JAKMIP1Q96N16 626 aaKnown RBP22.35■■□□□ 1.17
SMPD3-201ENST00000219334 MYD88Q99836 296 aa22.35■■□□□ 1.17
SMPD3-201ENST00000219334 CCP110O43303 1012 aa22.35■■□□□ 1.17
SMPD3-201ENST00000219334 USHBP1Q8N6Y0 703 aa22.35■■□□□ 1.17
SMPD3-201ENST00000219334 RPGRQ92834 1020 aaKnown RBP22.35■■□□□ 1.17
SMPD3-201ENST00000219334 TSPY26PQ9H489 355 aa22.35■■□□□ 1.17
SMPD3-201ENST00000219334 RSPH6AQ9H0K4 717 aa22.35■■□□□ 1.17
SMPD3-201ENST00000219334 TRMT112Q9UI30 125 aaKnown RBP22.35■■□□□ 1.17
SMPD3-201ENST00000219334 HMGXB3Q12766 1538 aa22.35■■□□□ 1.17
SMPD3-201ENST00000219334 SERPINC1P01008 464 aa22.34■■□□□ 1.17
SMPD3-201ENST00000219334 PRXQ9BXM0 1461 aa22.34■■□□□ 1.17
SMPD3-201ENST00000219334 KIF1BPQ96EK5 621 aa22.34■■□□□ 1.17
SMPD3-201ENST00000219334 ADGRL1O94910 1474 aa22.34■■□□□ 1.17
SMPD3-201ENST00000219334 IFIT5Q13325 482 aaKnown RBP22.34■■□□□ 1.17
SMPD3-201ENST00000219334 MAGI1Q96QZ7 1491 aaPredicted RBP22.34■■□□□ 1.17
SMPD3-201ENST00000219334 DNMBPQ6XZF7 1577 aa22.34■■□□□ 1.17
SMPD3-201ENST00000219334 ARHGEF11O15085 1522 aa22.33■■□□□ 1.17
SMPD3-201ENST00000219334 MRE11P49959 708 aa22.33■■□□□ 1.17
SMPD3-201ENST00000219334 NME9Q86XW9 330 aa22.33■■□□□ 1.17
SMPD3-201ENST00000219334 DZIP1Q86YF9 867 aaKnown RBP22.33■■□□□ 1.17
SMPD3-201ENST00000219334 ERCC4Q92889 916 aaPredicted RBP22.33■■□□□ 1.17
SMPD3-201ENST00000219334 MKNK2Q9HBH9 465 aa22.33■■□□□ 1.17
SMPD3-201ENST00000219334 WASLO00401 505 aaPredicted RBP22.32■■□□□ 1.16
SMPD3-201ENST00000219334 FAM43AQ8N2R8 423 aa22.32■■□□□ 1.16
SMPD3-201ENST00000219334 PIBF1Q8WXW3 757 aa22.32■■□□□ 1.16
SMPD3-201ENST00000219334 DEF6Q9H4E7 631 aa22.32■■□□□ 1.16
SMPD3-201ENST00000219334 TRAK2O60296 914 aa22.32■■□□□ 1.16
SMPD3-201ENST00000219334 FBXO31Q5XUX0 539 aaPredicted RBP22.32■■□□□ 1.16
SMPD3-201ENST00000219334 KRT28Q7Z3Y7 464 aa22.32■■□□□ 1.16
SMPD3-201ENST00000219334 ZNF771Q7L3S4 317 aaPredicted RBP22.32■■□□□ 1.16
SMPD3-201ENST00000219334 PPFIBP1Q86W92 1011 aa22.32■■□□□ 1.16
SMPD3-201ENST00000219334 NFKBIBQ15653 356 aa22.31■■□□□ 1.16
SMPD3-201ENST00000219334 MATR3P43243 847 aaKnown RBP eCLIP22.31■■□□□ 1.16
SMPD3-201ENST00000219334 TNIP1Q15025 636 aa22.31■■□□□ 1.16
SMPD3-201ENST00000219334 NUTM1Q86Y26 1132 aa22.31■■□□□ 1.16
SMPD3-201ENST00000219334 THUMPD2Q9BTF0 503 aaKnown RBP22.31■■□□□ 1.16
SMPD3-201ENST00000219334 SEC63Q9UGP8 760 aaKnown RBP22.31■■□□□ 1.16
SMPD3-201ENST00000219334 RAB11FIP3O75154 756 aa22.3■■□□□ 1.16
SMPD3-201ENST00000219334 TNMDQ9H2S6 317 aa22.3■■□□□ 1.16
SMPD3-201ENST00000219334 EXOC6BQ9Y2D4 811 aa22.3■■□□□ 1.16
SMPD3-201ENST00000219334 TXLNBQ8N3L3 684 aa22.3■■□□□ 1.16
SMPD3-201ENST00000219334 GLRX3O76003 335 aaKnown RBP22.3■■□□□ 1.16
SMPD3-201ENST00000219334 TTLL12Q14166 644 aaPredicted RBP22.3■■□□□ 1.16
SMPD3-201ENST00000219334 U3KPZ7 1027 aaPredicted RBP22.3■■□□□ 1.16
SMPD3-201ENST00000219334 CCDC192P0DO97 292 aa22.3■■□□□ 1.16
SMPD3-201ENST00000219334 MINDY4BA8MYZ0 360 aa22.29■■□□□ 1.16
SMPD3-201ENST00000219334 MAP3K12Q12852 859 aa22.29■■□□□ 1.16
SMPD3-201ENST00000219334 DHX8Q14562 1220 aaKnown RBP22.29■■□□□ 1.16
SMPD3-201ENST00000219334 SLF2Q8IX21 1173 aa22.29■■□□□ 1.16
SMPD3-201ENST00000219334 CDK13Q14004 1512 aaKnown RBP22.29■■□□□ 1.16
SMPD3-201ENST00000219334 SUPT6HQ7KZ85 1726 aaKnown RBP22.29■■□□□ 1.16
SMPD3-201ENST00000219334 SLC5A1P13866 664 aa22.29■■□□□ 1.16
SMPD3-201ENST00000219334 CADPS2Q86UW7 1296 aa22.29■■□□□ 1.16
SMPD3-201ENST00000219334 CFAP45Q9UL16 551 aa22.29■■□□□ 1.16
SMPD3-201ENST00000219334 DCTN1Q14203 1278 aa22.29■■□□□ 1.16
SMPD3-201ENST00000219334 TEX13AQ9BXU3 409 aaPredicted RBP22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms