RNA–Protein interactions for RNA: ENST00000216513.4

SIX4-201, Transcript of SIX homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX4, Length 6,285 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-201ENST00000216513 HSP90AB3PQ58FF7 597 aa16.6■□□□□ 0.25
SIX4-201ENST00000216513 ATP10AO60312 1499 aa16.6■□□□□ 0.25
SIX4-201ENST00000216513 FBLN1P23142 703 aa16.6■□□□□ 0.25
SIX4-201ENST00000216513 SMARCC1Q92922 1105 aaPredicted RBP16.59■□□□□ 0.25
SIX4-201ENST00000216513 SETDB2Q96T68 719 aa16.59■□□□□ 0.25
SIX4-201ENST00000216513 BIVM-ERCC5R4GMW8 1640 aa16.59■□□□□ 0.25
SIX4-201ENST00000216513 CNTROBQ8N137 903 aa16.59■□□□□ 0.25
SIX4-201ENST00000216513 WWC2Q6AWC2 1192 aa16.59■□□□□ 0.25
SIX4-201ENST00000216513 NFE2L2Q16236 605 aa16.59■□□□□ 0.25
SIX4-201ENST00000216513 ECM2O94769 699 aaPredicted RBP16.58■□□□□ 0.24
SIX4-201ENST00000216513 TSPOAP1O95153 1857 aa16.58■□□□□ 0.24
SIX4-201ENST00000216513 NACAP1Q9BZK3 213 aa16.58■□□□□ 0.24
SIX4-201ENST00000216513 IDH1O75874 414 aaKnown RBP16.58■□□□□ 0.24
SIX4-201ENST00000216513 TEX13AQ9BXU3 409 aaPredicted RBP16.58■□□□□ 0.24
SIX4-201ENST00000216513 RTCBQ9Y3I0 505 aaKnown RBP16.58■□□□□ 0.24
SIX4-201ENST00000216513 SAFBQ15424 915 aaKnown RBP eCLIP16.57■□□□□ 0.24
SIX4-201ENST00000216513 NCOA1Q15788 1441 aa16.57■□□□□ 0.24
SIX4-201ENST00000216513 NINLQ9Y2I6 1382 aa16.57■□□□□ 0.24
SIX4-201ENST00000216513 REC8O95072 547 aa16.57■□□□□ 0.24
SIX4-201ENST00000216513 DUSP27Q5VZP5 1158 aa16.57■□□□□ 0.24
SIX4-201ENST00000216513 ORAI2Q96SN7 254 aa16.57■□□□□ 0.24
SIX4-201ENST00000216513 MAP4K4O95819 1239 aaPredicted RBP16.57■□□□□ 0.24
SIX4-201ENST00000216513 CCT4P50991 539 aaKnown RBP16.57■□□□□ 0.24
SIX4-201ENST00000216513 CSPP1Q1MSJ5 1256 aa16.57■□□□□ 0.24
SIX4-201ENST00000216513 DZIP1Q86YF9 867 aaKnown RBP16.57■□□□□ 0.24
SIX4-201ENST00000216513 NUP153P49790 1475 aaKnown RBP16.57■□□□□ 0.24
SIX4-201ENST00000216513 GPR162Q16538 588 aa16.57■□□□□ 0.24
SIX4-201ENST00000216513 SKAP1Q86WV1 359 aa16.57■□□□□ 0.24
SIX4-201ENST00000216513 USP5P45974 858 aa16.56■□□□□ 0.24
SIX4-201ENST00000216513 KIAA0556O60303 1618 aa16.56■□□□□ 0.24
SIX4-201ENST00000216513 RBM26Q5T8P6 1007 aaKnown RBP16.56■□□□□ 0.24
SIX4-201ENST00000216513 PPP1R42Q7Z4L9 355 aa16.56■□□□□ 0.24
SIX4-201ENST00000216513 BRMS1Q9HCU9 246 aa16.56■□□□□ 0.24
SIX4-201ENST00000216513 SRGAP3O43295 1099 aa16.55■□□□□ 0.24
SIX4-201ENST00000216513 IFIT1P09914 478 aaKnown RBP16.55■□□□□ 0.24
SIX4-201ENST00000216513 TDO2P48775 406 aa16.55■□□□□ 0.24
SIX4-201ENST00000216513 IFIT5Q13325 482 aaKnown RBP16.55■□□□□ 0.24
SIX4-201ENST00000216513 AACSQ86V21 672 aa16.55■□□□□ 0.24
SIX4-201ENST00000216513 CEP170Q5SW79 1584 aa16.55■□□□□ 0.24
SIX4-201ENST00000216513 KAT6BQ8WYB5 2073 aa16.55■□□□□ 0.24
SIX4-201ENST00000216513 LARP1Q6PKG0 1096 aaKnown RBP16.55■□□□□ 0.24
SIX4-201ENST00000216513 POLR3DP05423 398 aaPredicted RBP16.54■□□□□ 0.24
SIX4-201ENST00000216513 CCDC47Q96A33 483 aaKnown RBP16.54■□□□□ 0.24
SIX4-201ENST00000216513 QTRT2Q9H974 415 aaKnown RBP16.54■□□□□ 0.24
SIX4-201ENST00000216513 PPIP5K1Q6PFW1 1433 aa16.54■□□□□ 0.24
SIX4-201ENST00000216513 GNPATO15228 680 aa16.53■□□□□ 0.24
SIX4-201ENST00000216513 ATP5J2-PTCD1G3V325 749 aa16.53■□□□□ 0.24
SIX4-201ENST00000216513 RXRBP28702 533 aa16.53■□□□□ 0.24
SIX4-201ENST00000216513 CENPQQ7L2Z9 268 aaPredicted RBP16.53■□□□□ 0.24
SIX4-201ENST00000216513 DUOX2Q9NRD8 1548 aa16.53■□□□□ 0.24
SIX4-201ENST00000216513 TTC21BQ7Z4L5 1316 aa16.53■□□□□ 0.24
SIX4-201ENST00000216513 MYO1BO43795 1136 aa16.53■□□□□ 0.24
SIX4-201ENST00000216513 ATP2B1P20020 1258 aa16.53■□□□□ 0.24
SIX4-201ENST00000216513 XBP1P17861 261 aa16.53■□□□□ 0.24
SIX4-201ENST00000216513 CCNL1Q9UK58 526 aaPredicted RBP16.52■□□□□ 0.24
SIX4-201ENST00000216513 ANKRD18BA2A2Z9 1011 aa16.52■□□□□ 0.23
SIX4-201ENST00000216513 SLC39A6Q13433 755 aa16.52■□□□□ 0.23
SIX4-201ENST00000216513 CCDC184Q52MB2 194 aa16.52■□□□□ 0.23
SIX4-201ENST00000216513 ZSCAN25Q6NSZ9 544 aa16.52■□□□□ 0.23
SIX4-201ENST00000216513 JDP2Q8WYK2 163 aa16.52■□□□□ 0.23
SIX4-201ENST00000216513 CCAR2Q8N163 923 aaKnown RBP16.51■□□□□ 0.23
SIX4-201ENST00000216513 SIRT1Q96EB6 747 aa16.51■□□□□ 0.23
SIX4-201ENST00000216513 NUP133Q8WUM0 1156 aa16.51■□□□□ 0.23
SIX4-201ENST00000216513 PCMTD1Q96MG8 357 aaPredicted RBP16.51■□□□□ 0.23
SIX4-201ENST00000216513 BCAR3O75815 825 aa16.51■□□□□ 0.23
SIX4-201ENST00000216513 GCP02774 474 aa16.51■□□□□ 0.23
SIX4-201ENST00000216513 TPM2P07951 284 aa16.5■□□□□ 0.23
SIX4-201ENST00000216513 TMPOP42166 694 aaKnown RBP16.5■□□□□ 0.23
SIX4-201ENST00000216513 PIBF1Q8WXW3 757 aa16.5■□□□□ 0.23
SIX4-201ENST00000216513 GJA3Q9Y6H8 435 aa16.5■□□□□ 0.23
SIX4-201ENST00000216513 DDX49Q9Y6V7 483 aaKnown RBP16.5■□□□□ 0.23
SIX4-201ENST00000216513 LMOD1P29536 600 aaPredicted RBP16.5■□□□□ 0.23
SIX4-201ENST00000216513 HSP90AB2PQ58FF8 381 aa16.5■□□□□ 0.23
SIX4-201ENST00000216513 INTS3Q68E01 1043 aaKnown RBP16.5■□□□□ 0.23
SIX4-201ENST00000216513 ZNF592Q92610 1267 aa16.5■□□□□ 0.23
SIX4-201ENST00000216513 SYAP1Q96A49 352 aaPredicted RBP16.5■□□□□ 0.23
SIX4-201ENST00000216513 BRD4O60885 1362 aaPredicted RBP16.5■□□□□ 0.23
SIX4-201ENST00000216513 F8W031 263 aaPredicted RBP16.5■□□□□ 0.23
SIX4-201ENST00000216513 TBX22Q9Y458 520 aa16.5■□□□□ 0.23
SIX4-201ENST00000216513 JARID2Q92833 1246 aaPredicted RBP16.5■□□□□ 0.23
SIX4-201ENST00000216513 TTC21AQ8NDW8 1320 aa16.5■□□□□ 0.23
SIX4-201ENST00000216513 PIP4K2AP48426 406 aaPredicted RBP16.49■□□□□ 0.23
SIX4-201ENST00000216513 TRAPPC3LQ5T215 181 aa16.49■□□□□ 0.23
SIX4-201ENST00000216513 NIP7Q9Y221 180 aaKnown RBP eCLIP16.49■□□□□ 0.23
SIX4-201ENST00000216513 CDC5LQ99459 802 aaKnown RBP16.49■□□□□ 0.23
SIX4-201ENST00000216513 PBRM1Q86U86 1689 aa16.49■□□□□ 0.23
SIX4-201ENST00000216513 ZRANB1Q9UGI0 708 aa16.49■□□□□ 0.23
SIX4-201ENST00000216513 ZBED9Q6R2W3 1325 aa16.49■□□□□ 0.23
SIX4-201ENST00000216513 ZNF408Q9H9D4 720 aa16.48■□□□□ 0.23
SIX4-201ENST00000216513 SLC5A1P13866 664 aa16.48■□□□□ 0.23
SIX4-201ENST00000216513 ZNF772Q68DY9 489 aaPredicted RBP16.48■□□□□ 0.23
SIX4-201ENST00000216513 SNRPA1P09661 255 aaKnown RBP16.48■□□□□ 0.23
SIX4-201ENST00000216513 VPS37CA5D8V6 355 aaPredicted RBP16.48■□□□□ 0.23
SIX4-201ENST00000216513 FEZ1Q99689 392 aa16.48■□□□□ 0.23
SIX4-201ENST00000216513 NUP160Q12769 1436 aa16.47■□□□□ 0.23
SIX4-201ENST00000216513 MPNDQ8N594 471 aa16.47■□□□□ 0.23
SIX4-201ENST00000216513 AIDAQ96BJ3 306 aa16.47■□□□□ 0.23
SIX4-201ENST00000216513 SLC4A8Q2Y0W8 1093 aa16.47■□□□□ 0.23
SIX4-201ENST00000216513 IL1RAPL2Q9NP60 686 aa16.47■□□□□ 0.23
SIX4-201ENST00000216513 ZFYVE16Q7Z3T8 1539 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms