RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 ZKSCAN5Q9Y2L8 839 aa18.76■□□□□ 0.59
CDX1-202ENST00000616154 PCYT1BQ9Y5K3 369 aaPredicted RBP18.76■□□□□ 0.59
CDX1-202ENST00000616154 OAS3Q9Y6K5 1087 aaKnown RBP18.76■□□□□ 0.59
CDX1-202ENST00000616154 UBR5O95071 2799 aaPredicted RBP18.76■□□□□ 0.59
CDX1-202ENST00000616154 HECTD1Q9ULT8 2610 aa18.76■□□□□ 0.59
CDX1-202ENST00000616154 TRBV23OR9-2A0A075B6M9 112 aa18.75■□□□□ 0.59
CDX1-202ENST00000616154 EFCAB7A8K855 629 aa18.75■□□□□ 0.59
CDX1-202ENST00000616154 PRKD1Q15139 912 aaPredicted RBP18.75■□□□□ 0.59
CDX1-202ENST00000616154 HENMT1Q5T8I9 393 aaKnown RBP18.75■□□□□ 0.59
CDX1-202ENST00000616154 WDR74Q6RFH5 385 aaPredicted RBP18.75■□□□□ 0.59
CDX1-202ENST00000616154 NPNTQ6UXI9 565 aa18.75■□□□□ 0.59
CDX1-202ENST00000616154 SPOCD1Q6ZMY3 1216 aa18.75■□□□□ 0.59
CDX1-202ENST00000616154 BZW1Q7L1Q6 419 aaKnown RBP18.75■□□□□ 0.59
CDX1-202ENST00000616154 RFX6Q8HWS3 928 aa18.75■□□□□ 0.59
CDX1-202ENST00000616154 TXLNBQ8N3L3 684 aa18.75■□□□□ 0.59
CDX1-202ENST00000616154 IL22RA1Q8N6P7 574 aa18.75■□□□□ 0.59
CDX1-202ENST00000616154 BMPERQ8N8U9 685 aa18.75■□□□□ 0.59
CDX1-202ENST00000616154 SARS2Q9NP81 518 aaKnown RBP18.75■□□□□ 0.59
CDX1-202ENST00000616154 ZNHIT2Q9UHR6 403 aa18.75■□□□□ 0.59
CDX1-202ENST00000616154 hCG_1818297A0A087WSY0 165 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 A0A0U1RQJ8 604 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 C1orf232A0A0U1RR37 186 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 RGSL1A5PLK6 1076 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 TERTO14746 1132 aaKnown RBP18.74■□□□□ 0.59
CDX1-202ENST00000616154 ATP1A1P05023 1023 aaKnown RBP18.74■□□□□ 0.59
CDX1-202ENST00000616154 LIFP15018 202 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 SPINT3P49223 89 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 CSRP3P50461 194 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 HHEXQ03014 270 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 CLCA4Q14CN2 919 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 PPP2R5EQ16537 467 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 QPCTQ16769 361 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 TFDP3Q5H9I0 405 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 DCAF12Q5T6F0 453 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 CHST15Q7LFX5 561 aaPredicted RBP18.74■□□□□ 0.59
CDX1-202ENST00000616154 FAM129CQ86XR2 697 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 REXO1L1PQ8IX06 675 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 RCOR2Q8IZ40 523 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 CACNA2D3Q8IZS8 1091 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 IMP4Q96G21 291 aaKnown RBP18.74■□□□□ 0.59
CDX1-202ENST00000616154 TEFMQ96QE5 360 aaKnown RBP18.74■□□□□ 0.59
CDX1-202ENST00000616154 TRIB3Q96RU7 358 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 HERPUD2Q9BSE4 406 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 FAM83DQ9H4H8 585 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 STN1Q9H668 368 aaKnown RBP18.74■□□□□ 0.59
CDX1-202ENST00000616154 GEMIN8Q9NWZ8 242 aaKnown RBP18.74■□□□□ 0.59
CDX1-202ENST00000616154 PKD2L2Q9NZM6 624 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 TBC1D29Q9UFV1 150 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 PRKAB1Q9Y478 270 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 MAST4O15021 2626 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 A6NCN8 305 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 FADS2P1A8MWK0 482 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 RAD1O60671 282 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 PPFIA2O75334 1257 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 ZRANB2O95218 330 aaKnown RBP eCLIP18.74■□□□□ 0.59
CDX1-202ENST00000616154 MARCKSL1P49006 195 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 EPHA4P54764 986 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 NFKB2Q00653 900 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 ADCY2Q08462 1091 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 ODF2Q5BJF6 829 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 ANKS6Q68DC2 871 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 IYDQ6PHW0 289 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 ATG14Q6ZNE5 492 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 LYSMD3Q7Z3D4 306 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 ARHGAP22Q7Z5H3 698 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 KIAA1328Q86T90 577 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 CCHCR1Q8TD31 782 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 SH3KBP1Q96B97 665 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 RBM41Q96IZ5 413 aaKnown RBP18.74■□□□□ 0.59
CDX1-202ENST00000616154 SLC25A51Q9H1U9 297 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 ADNPQ9H2P0 1102 aa18.74■□□□□ 0.59
CDX1-202ENST00000616154 ANKRD66B4E2M5 251 aa18.73■□□□□ 0.59
CDX1-202ENST00000616154 ZSCAN12O43309 604 aa18.73■□□□□ 0.59
CDX1-202ENST00000616154 SUV39H1O43463 412 aa18.73■□□□□ 0.59
CDX1-202ENST00000616154 CST8O60676 142 aa18.73■□□□□ 0.59
CDX1-202ENST00000616154 ACP5P13686 325 aa18.73■□□□□ 0.59
CDX1-202ENST00000616154 SLC2A4P14672 509 aa18.73■□□□□ 0.59
CDX1-202ENST00000616154 CTNNA1P35221 906 aaKnown RBP18.73■□□□□ 0.59
CDX1-202ENST00000616154 CD86P42081 329 aa18.73■□□□□ 0.59
CDX1-202ENST00000616154 PPM1FP49593 454 aaPredicted RBP18.73■□□□□ 0.59
CDX1-202ENST00000616154 MC2RQ01718 297 aa18.73■□□□□ 0.59
CDX1-202ENST00000616154 AP1B1Q10567 949 aa18.73■□□□□ 0.59
CDX1-202ENST00000616154 KIF5AQ12840 1032 aa18.73■□□□□ 0.59
CDX1-202ENST00000616154 NFATC2Q13469 925 aa18.73■□□□□ 0.59
CDX1-202ENST00000616154 TEX44Q53QW1 395 aa18.73■□□□□ 0.59
CDX1-202ENST00000616154 BORAQ6PGQ7 559 aa18.73■□□□□ 0.59
CDX1-202ENST00000616154 SLC9B2Q86UD5 537 aa18.73■□□□□ 0.59
CDX1-202ENST00000616154 KRT35Q92764 455 aa18.73■□□□□ 0.59
CDX1-202ENST00000616154 RTP4Q96DX8 246 aa18.73■□□□□ 0.59
CDX1-202ENST00000616154 MLPHQ9BV36 600 aaPredicted RBP18.73■□□□□ 0.59
CDX1-202ENST00000616154 TSGA10Q9BZW7 698 aa18.73■□□□□ 0.59
CDX1-202ENST00000616154 TRIM4Q9C037 500 aa18.73■□□□□ 0.59
CDX1-202ENST00000616154 SLC25A18Q9H1K4 315 aa18.73■□□□□ 0.59
CDX1-202ENST00000616154 CARD9Q9H257 536 aa18.73■□□□□ 0.59
CDX1-202ENST00000616154 IL17BQ9UHF5 180 aa18.73■□□□□ 0.59
CDX1-202ENST00000616154 PILRAQ9UKJ1 303 aa18.73■□□□□ 0.59
CDX1-202ENST00000616154 KCNK6Q9Y257 313 aa18.73■□□□□ 0.59
CDX1-202ENST00000616154 EFR3BQ9Y2G0 817 aa18.73■□□□□ 0.59
CDX1-202ENST00000616154 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.73■□□□□ 0.59
CDX1-202ENST00000616154 PTPN13Q12923 2485 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms