RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 GOLGA6L10A0A0M3HER8 536 aa19.27■□□□□ 0.68
SHKBP1-221ENST00000599833 A6NCN8 305 aa19.27■□□□□ 0.68
SHKBP1-221ENST00000599833 GPR89AB7ZAQ6 455 aa19.27■□□□□ 0.68
SHKBP1-221ENST00000599833 E7EVH7 732 aa19.27■□□□□ 0.68
SHKBP1-221ENST00000599833 ASMTLO95671 621 aa19.27■□□□□ 0.68
SHKBP1-221ENST00000599833 GPR89BP0CG08 455 aa19.27■□□□□ 0.68
SHKBP1-221ENST00000599833 CDK16Q00536 496 aa19.27■□□□□ 0.68
SHKBP1-221ENST00000599833 TMEM115Q12893 351 aaPredicted RBP19.27■□□□□ 0.68
SHKBP1-221ENST00000599833 PTK6Q13882 451 aa19.27■□□□□ 0.68
SHKBP1-221ENST00000599833 LRRC8BQ6P9F7 803 aa19.27■□□□□ 0.68
SHKBP1-221ENST00000599833 PPP1R21Q6ZMI0 780 aa19.27■□□□□ 0.68
SHKBP1-221ENST00000599833 GKN2Q86XP6 184 aa19.27■□□□□ 0.68
SHKBP1-221ENST00000599833 GALNT13Q8IUC8 556 aa19.27■□□□□ 0.68
SHKBP1-221ENST00000599833 PIANPQ8IYJ0 282 aa19.27■□□□□ 0.68
SHKBP1-221ENST00000599833 ARL10Q8N8L6 244 aa19.27■□□□□ 0.68
SHKBP1-221ENST00000599833 RASGEF1AQ8N9B8 481 aa19.27■□□□□ 0.68
SHKBP1-221ENST00000599833 NAT8LQ8N9F0 302 aa19.27■□□□□ 0.68
SHKBP1-221ENST00000599833 DNAAF3Q8N9W5 541 aa19.27■□□□□ 0.68
SHKBP1-221ENST00000599833 TAAR2Q9P1P5 351 aa19.27■□□□□ 0.68
SHKBP1-221ENST00000599833 APPL1Q9UKG1 709 aa19.27■□□□□ 0.68
SHKBP1-221ENST00000599833 TCAF1Q9Y4C2 921 aa19.27■□□□□ 0.68
SHKBP1-221ENST00000599833 PIKFYVEQ9Y2I7 2098 aa19.27■□□□□ 0.68
SHKBP1-221ENST00000599833 CELSR3Q9NYQ7 3312 aa19.27■□□□□ 0.67
SHKBP1-221ENST00000599833 IGLV3-16A0A075B6K0 115 aa19.26■□□□□ 0.67
SHKBP1-221ENST00000599833 FAM221BA6H8Z2 402 aa19.26■□□□□ 0.67
SHKBP1-221ENST00000599833 TP73O15350 636 aa19.26■□□□□ 0.67
SHKBP1-221ENST00000599833 VEGFDO43915 354 aa19.26■□□□□ 0.67
SHKBP1-221ENST00000599833 ADRA1DP25100 572 aa19.26■□□□□ 0.67
SHKBP1-221ENST00000599833 MC4RP32245 332 aa19.26■□□□□ 0.67
SHKBP1-221ENST00000599833 HADHAP40939 763 aa19.26■□□□□ 0.67
SHKBP1-221ENST00000599833 MAGEA3P43357 314 aa19.26■□□□□ 0.67
SHKBP1-221ENST00000599833 CTSCP53634 463 aa19.26■□□□□ 0.67
SHKBP1-221ENST00000599833 CRADDP78560 199 aa19.26■□□□□ 0.67
SHKBP1-221ENST00000599833 ITGA9Q13797 1035 aa19.26■□□□□ 0.67
SHKBP1-221ENST00000599833 SEPT6Q14141 434 aa19.26■□□□□ 0.67
SHKBP1-221ENST00000599833 HS1BP3Q53T59 392 aa19.26■□□□□ 0.67
SHKBP1-221ENST00000599833 PERM1Q5SV97 790 aa19.26■□□□□ 0.67
SHKBP1-221ENST00000599833 TSTD2Q5T7W7 516 aa19.26■□□□□ 0.67
SHKBP1-221ENST00000599833 TAF8Q7Z7C8 310 aa19.26■□□□□ 0.67
SHKBP1-221ENST00000599833 GULP1Q9UBP9 304 aa19.26■□□□□ 0.67
SHKBP1-221ENST00000599833 RNF14Q9UBS8 474 aa19.26■□□□□ 0.67
SHKBP1-221ENST00000599833 RABGEF1Q9UJ41 708 aa19.26■□□□□ 0.67
SHKBP1-221ENST00000599833 GPR34Q9UPC5 381 aa19.26■□□□□ 0.67
SHKBP1-221ENST00000599833 GPSM3Q9Y4H4 160 aa19.26■□□□□ 0.67
SHKBP1-221ENST00000599833 KNTC1P50748 2209 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 CCDC78A2IDD5 438 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 OR51F1A6NGY5 319 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 GRID2O43424 1007 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 HYAL3O43820 417 aaPredicted RBP19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 RFPL3O75679 317 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 FOXN2P32314 431 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 LMAN1P49257 510 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 CLDN6P56747 220 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 SHC2P98077 582 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 ILKQ13418 452 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 LRP8Q14114 963 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 HLTFQ14527 1009 aaKnown RBP eCLIP19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 SMAD1Q15797 465 aaKnown RBP19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 LDLRAP1Q5SW96 308 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 RNASEH2BQ5TBB1 312 aaKnown RBP19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 SNX20Q7Z614 316 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 NAGSQ8N159 534 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 NXPE1Q8N323 547 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 MPP5Q8N3R9 675 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 CHCHD4Q8N4Q1 142 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 FAM46DQ8NEK8 389 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 GRK7Q8WTQ7 553 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 NAT14Q8WUY8 206 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 PATE1Q8WXA2 126 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 GSDMCQ9BYG8 508 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 FAM96AQ9H5X1 160 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 ASB8Q9H765 288 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 TREX1Q9NSU2 369 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 SYBUQ9NX95 663 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 SIRPGQ9P1W8 387 aa19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 APOBEC2Q9Y235 224 aaKnown RBP19.25■□□□□ 0.67
SHKBP1-221ENST00000599833 HEATR9A2RTY3 570 aa19.24■□□□□ 0.67
SHKBP1-221ENST00000599833 CCDC162PA2VCL2 907 aa19.24■□□□□ 0.67
SHKBP1-221ENST00000599833 AVILO75366 819 aa19.24■□□□□ 0.67
SHKBP1-221ENST00000599833 ECEL1O95672 775 aa19.24■□□□□ 0.67
SHKBP1-221ENST00000599833 SPINK2P20155 84 aa19.24■□□□□ 0.67
SHKBP1-221ENST00000599833 ARNTP27540 789 aa19.24■□□□□ 0.67
SHKBP1-221ENST00000599833 CASQ1P31415 396 aa19.24■□□□□ 0.67
SHKBP1-221ENST00000599833 CLCNKAP51800 687 aa19.24■□□□□ 0.67
SHKBP1-221ENST00000599833 TERF1P54274 439 aa19.24■□□□□ 0.67
SHKBP1-221ENST00000599833 ILF3Q12906 894 aaKnown RBP eCLIP19.24■□□□□ 0.67
SHKBP1-221ENST00000599833 FOXC1Q12948 553 aa19.24■□□□□ 0.67
SHKBP1-221ENST00000599833 NR0B2Q15466 257 aa19.24■□□□□ 0.67
SHKBP1-221ENST00000599833 SLC30A9Q6PML9 568 aa19.24■□□□□ 0.67
SHKBP1-221ENST00000599833 DHRS13Q6UX07 377 aa19.24■□□□□ 0.67
SHKBP1-221ENST00000599833 CHST15Q7LFX5 561 aaPredicted RBP19.24■□□□□ 0.67
SHKBP1-221ENST00000599833 ZNF572Q7Z3I7 529 aaPredicted RBP19.24■□□□□ 0.67
SHKBP1-221ENST00000599833 MCUQ8NE86 351 aa19.24■□□□□ 0.67
SHKBP1-221ENST00000599833 PEX13Q92968 403 aa19.24■□□□□ 0.67
SHKBP1-221ENST00000599833 KIFC1Q9BW19 673 aa19.24■□□□□ 0.67
SHKBP1-221ENST00000599833 CHRAC1Q9NRG0 131 aa19.24■□□□□ 0.67
SHKBP1-221ENST00000599833 TBC1D29Q9UFV1 150 aa19.24■□□□□ 0.67
SHKBP1-221ENST00000599833 ZNHIT2Q9UHR6 403 aa19.24■□□□□ 0.67
SHKBP1-221ENST00000599833 ZZEF1O43149 2961 aa19.24■□□□□ 0.67
SHKBP1-221ENST00000599833 CCDC188H7C350 402 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms