RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 TMEM184BQ9Y519 407 aaPredicted RBP8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 C1orf232A0A0U1RR37 186 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 OR52A4PA6NMU1 304 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 EIF3CLB5ME19 914 aaKnown RBP8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 GRID2O43424 1007 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 RASSF9O75901 435 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 F3P13726 295 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 GNLYP22749 145 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 RPL10P27635 214 aaKnown RBP8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 CD97P48960 835 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 DRG2P55039 364 aaKnown RBP8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 UBE2IP63279 158 aaKnown RBP8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 LRP8Q14114 963 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 KRT81Q14533 505 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 KCNAB1Q14722 419 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 QPCTQ16769 361 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 KHDC1Q4VXA5 237 aaKnown RBP8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 TDRD12Q587J7 1177 aaKnown RBP8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 CT47A1Q5JQC4 288 aaPredicted RBP8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 HENMT1Q5T8I9 393 aaKnown RBP8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 CPZQ66K79 652 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 NCBP2-AS2Q69YL0 99 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 FAM199XQ6PEV8 388 aaPredicted RBP8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 CERS6Q6ZMG9 384 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 FAM92BQ6ZTR7 304 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 LYSMD3Q7Z3D4 306 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 BBS5Q8N3I7 341 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 TTC30BQ8N4P2 665 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 TEX26Q8N6G2 289 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 TEX19Q8NA77 164 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 ANKRD20A12PQ8NF67 263 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 ARRDC2Q8TBH0 407 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 C9orf72Q96LT7 481 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 TEFMQ96QE5 360 aaKnown RBP8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 EIF3CQ99613 913 aaKnown RBP8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 DPYSL5Q9BPU6 564 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 THAP2Q9H0W7 228 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 FBXO8Q9NRD0 319 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 KLC4Q9NSK0 619 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 LUZP4Q9P127 313 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 ZNF624Q9P2J8 865 aaPredicted RBP8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 RCOR3Q9P2K3 495 aaPredicted RBP8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 LNPEPQ9UIQ6 1025 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 TLK1Q9UKI8 766 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 SHOC2Q9UQ13 582 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 MED13LQ71F56 2210 aa8.53□□□□□ -1.04
SHKBP1-220ENST00000599716 A0A1W2PQ67 120 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 A1L4Q6 167 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 LRRC10BA6NIK2 292 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 KCNK1O00180 336 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 CAPN5O15484 640 aaPredicted RBP8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 MMP2P08253 660 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 PCK1P35558 622 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 GARSP41250 739 aaKnown RBP8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 SLC19A1P41440 591 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 CD86P42081 329 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 SPINT3P49223 89 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 GBE1Q04446 702 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 KLHL30Q0D2K2 578 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 SLC10A2Q12908 348 aaPredicted RBP8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 KLRB1Q12918 225 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 SEPT6Q14141 434 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 PRR30Q53SZ7 412 aaPredicted RBP8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 FAM69BQ5VUD6 431 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 SASS6Q6UVJ0 657 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 C6orf15Q6UXA7 325 aaPredicted RBP8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 RBM43Q6ZSC3 357 aaKnown RBP8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 ASB18Q6ZVZ8 466 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 ZNF765Q7L2R6 523 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 SLC9B2Q86UD5 537 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 PSTKQ8IV42 348 aaKnown RBP8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 RASGRP3Q8IV61 690 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 ESX1Q8N693 406 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 GPR26Q8NDV2 337 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 CT55Q8WUE5 264 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 NAT14Q8WUY8 206 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 NAP1L5Q96NT1 182 aaPredicted RBP8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 SPATA16Q9BXB7 569 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 POLR1EQ9GZS1 481 aaKnown RBP8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 TWSG1Q9GZX9 223 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 FAM83DQ9H4H8 585 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 STN1Q9H668 368 aaKnown RBP8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 PCDH9Q9HC56 1237 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 ANO10Q9NW15 660 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 KCTD5Q9NXV2 234 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 ANAPC7Q9UJX3 599 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 SCINQ9Y6U3 715 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 SHANK1Q9Y566 2161 aa8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 MN1Q10571 1320 aaPredicted RBP8.52□□□□□ -1.05
SHKBP1-220ENST00000599716 COL6A5A8TX70 2615 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 SPTBP11277 2137 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 JMJD1CQ15652 2540 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 PIPSLA2A3N6 862 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 PDZK1P1A8MUH7 402 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 GPR39O43194 453 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 NUAK1O60285 661 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 SEMA7AO75326 666 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 SPAG6O75602 509 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 UBXN7O94888 489 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 NDUFA10O95299 355 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms