RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 SQSTM1Q13501 440 aa12□□□□□ -0.49
LIG1-217ENST00000599165 CHRNA6Q15825 494 aa12□□□□□ -0.49
LIG1-217ENST00000599165 NKAIN2Q5VXU1 208 aa12□□□□□ -0.49
LIG1-217ENST00000599165 KCTD11Q693B1 232 aa12□□□□□ -0.49
LIG1-217ENST00000599165 IYDQ6PHW0 289 aa12□□□□□ -0.49
LIG1-217ENST00000599165 XKR5Q6UX68 686 aa12□□□□□ -0.49
LIG1-217ENST00000599165 USP53Q70EK8 1073 aa12□□□□□ -0.49
LIG1-217ENST00000599165 CDKL3Q8IVW4 592 aaPredicted RBP12□□□□□ -0.49
LIG1-217ENST00000599165 LSMEM2Q8N112 164 aa12□□□□□ -0.49
LIG1-217ENST00000599165 DTX3LQ8TDB6 740 aa12□□□□□ -0.49
LIG1-217ENST00000599165 BBC3Q96PG8 261 aaPredicted RBP12□□□□□ -0.49
LIG1-217ENST00000599165 FICDQ9BVA6 458 aa12□□□□□ -0.49
LIG1-217ENST00000599165 TRABDQ9H4I3 376 aa12□□□□□ -0.49
LIG1-217ENST00000599165 PRORYQ9H606 182 aa12□□□□□ -0.49
LIG1-217ENST00000599165 EPB41L5Q9HCM4 733 aa12□□□□□ -0.49
LIG1-217ENST00000599165 TMEM9Q9P0T7 183 aa12□□□□□ -0.49
LIG1-217ENST00000599165 ATRXP46100 2492 aa12□□□□□ -0.49
LIG1-217ENST00000599165 IGHV5-10-1A0A0J9YXX1 117 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 MIF4GDA9UHW6 222 aaKnown RBP11.99□□□□□ -0.49
LIG1-217ENST00000599165 AGRPO00253 132 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 PLD2O14939 933 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 UGT1A9O60656 530 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 TJP3O95049 919 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 METTL18O95568 372 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 CPNE6O95741 557 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 BRAFP15056 766 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 UGT1A6P19224 532 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 ITIH1P19827 911 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 UGT1A1P22309 533 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 UGT1A4P22310 534 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 ALDH4A1P30038 563 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 UGT1A3P35503 534 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 ABCG1P45844 678 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 GPR3P46089 330 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 ARSDP51689 593 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 CLCNKAP51800 687 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 GEMP55040 296 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 PCBP4P57723 403 aaKnown RBP11.99□□□□□ -0.49
LIG1-217ENST00000599165 PLA2G4EQ3MJ16 856 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 AMZ1Q400G9 498 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 DARS2Q6PI48 645 aaKnown RBP11.99□□□□□ -0.49
LIG1-217ENST00000599165 CRTC3Q6UUV7 619 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 RAB11FIP2Q7L804 512 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 BLOC1S5Q8TDH9 187 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 CCDC97Q96F63 343 aaPredicted RBP11.99□□□□□ -0.49
LIG1-217ENST00000599165 NAF1Q96HR8 494 aaKnown RBP11.99□□□□□ -0.49
LIG1-217ENST00000599165 TMEM74Q96NL1 305 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 SRPK1Q96SB4 655 aaKnown RBP11.99□□□□□ -0.49
LIG1-217ENST00000599165 UGT1A7Q9HAW7 530 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 UGT1A10Q9HAW8 530 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 UGT1A8Q9HAW9 530 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 PRDM8Q9NQV8 689 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 RAD18Q9NS91 495 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 ARL5AQ9Y689 179 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 PIKFYVEQ9Y2I7 2098 aa11.99□□□□□ -0.49
LIG1-217ENST00000599165 PRAMEF33A0A0G2JMD5 474 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 C5orf60A6NFR6 353 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 RHPN2P1A8MT19 583 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 GPR89AB7ZAQ6 455 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 ANXA9O76027 345 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 ITGA2BP08514 1039 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 GPR89BP0CG08 455 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 F3P13726 295 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 SPAM1P38567 509 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 MLLT3P42568 568 aaPredicted RBP11.98□□□□□ -0.49
LIG1-217ENST00000599165 CTSCP53634 463 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 UBE2IP63279 158 aaKnown RBP11.98□□□□□ -0.49
LIG1-217ENST00000599165 CCZ1BP86790 482 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 CCZ1P86791 482 aaPredicted RBP11.98□□□□□ -0.49
LIG1-217ENST00000599165 XIAPP98170 497 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 SPARCL1Q14515 664 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 SOWAHCQ53LP3 525 aaPredicted RBP11.98□□□□□ -0.49
LIG1-217ENST00000599165 CCDC181Q5TID7 509 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 ITPRIPL1Q6GPH6 555 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 CCDC70Q6NSX1 233 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 FOXR1Q6PIV2 292 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 FAM151BQ6UXP7 276 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 GLT6D1Q7Z4J2 308 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 PHYKPLQ8IUZ5 450 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 SYCE1Q8N0S2 351 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 FBXO39Q8N4B4 442 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 RNF10Q8N5U6 811 aaKnown RBP11.98□□□□□ -0.49
LIG1-217ENST00000599165 FAM71DQ8N9W8 422 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 RCBTB1Q8NDN9 531 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 ZNF248Q8NDW4 579 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 NAT14Q8WUY8 206 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 ATG4AQ8WYN0 398 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 PMEPA1Q969W9 287 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 SARS2Q9NP81 518 aaKnown RBP11.98□□□□□ -0.49
LIG1-217ENST00000599165 THSD1Q9NS62 852 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 KLC4Q9NSK0 619 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 SMOXQ9NWM0 555 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 HACD3Q9P035 362 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 ZNF624Q9P2J8 865 aaPredicted RBP11.98□□□□□ -0.49
LIG1-217ENST00000599165 LOXL2Q9Y4K0 774 aa11.98□□□□□ -0.49
LIG1-217ENST00000599165 GLYATL1P3A0A0U1RQE8 302 aa11.97□□□□□ -0.49
LIG1-217ENST00000599165 C9orf172C9J069 976 aa11.97□□□□□ -0.49
LIG1-217ENST00000599165 SGTAO43765 313 aa11.97□□□□□ -0.49
LIG1-217ENST00000599165 VEGFDO43915 354 aa11.97□□□□□ -0.49
LIG1-217ENST00000599165 SNX2O60749 519 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms