RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 TARDBPQ13148 414 aaKnown RBP eCLIP11.12□□□□□ -0.63
SMAD4-211ENST00000590499 MPP3Q13368 585 aa11.12□□□□□ -0.63
SMAD4-211ENST00000590499 SIRPB2Q5JXA9 342 aa11.12□□□□□ -0.63
SMAD4-211ENST00000590499 PERM1Q5SV97 790 aa11.12□□□□□ -0.63
SMAD4-211ENST00000590499 SFTPA2Q8IWL1 248 aa11.12□□□□□ -0.63
SMAD4-211ENST00000590499 TTC30BQ8N4P2 665 aa11.12□□□□□ -0.63
SMAD4-211ENST00000590499 GPR26Q8NDV2 337 aa11.12□□□□□ -0.63
SMAD4-211ENST00000590499 SLC35B2Q8TB61 432 aa11.12□□□□□ -0.63
SMAD4-211ENST00000590499 UBE2Q2Q8WVN8 375 aa11.12□□□□□ -0.63
SMAD4-211ENST00000590499 SCG3Q8WXD2 468 aaKnown RBP11.12□□□□□ -0.63
SMAD4-211ENST00000590499 ZCCHC14Q8WYQ9 949 aaKnown RBP11.12□□□□□ -0.63
SMAD4-211ENST00000590499 GLMNQ92990 594 aa11.12□□□□□ -0.63
SMAD4-211ENST00000590499 NAT6Q93015 286 aa11.12□□□□□ -0.63
SMAD4-211ENST00000590499 SPATA13Q96N96 652 aa11.12□□□□□ -0.63
SMAD4-211ENST00000590499 SRPK1Q96SB4 655 aaKnown RBP11.12□□□□□ -0.63
SMAD4-211ENST00000590499 CDH19Q9H159 772 aa11.12□□□□□ -0.63
SMAD4-211ENST00000590499 DKK4Q9UBT3 224 aa11.12□□□□□ -0.63
SMAD4-211ENST00000590499 PADI4Q9UM07 663 aa11.12□□□□□ -0.63
SMAD4-211ENST00000590499 GUCA1BQ9UMX6 200 aa11.12□□□□□ -0.63
SMAD4-211ENST00000590499 GPR34Q9UPC5 381 aa11.12□□□□□ -0.63
SMAD4-211ENST00000590499 CLCA2Q9UQC9 943 aa11.12□□□□□ -0.63
SMAD4-211ENST00000590499 R3HDM2Q9Y2K5 976 aaKnown RBP11.12□□□□□ -0.63
SMAD4-211ENST00000590499 TMEM98Q9Y2Y6 226 aa11.12□□□□□ -0.63
SMAD4-211ENST00000590499 PCYT1BQ9Y5K3 369 aaPredicted RBP11.12□□□□□ -0.63
SMAD4-211ENST00000590499 OAS3Q9Y6K5 1087 aaKnown RBP11.12□□□□□ -0.63
SMAD4-211ENST00000590499 URB1O60287 2271 aaKnown RBP11.12□□□□□ -0.63
SMAD4-211ENST00000590499 ITPR1Q14643 2758 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 TRABD2BA6NFA1 517 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 CASC3O15234 703 aaKnown RBP11.11□□□□□ -0.63
SMAD4-211ENST00000590499 INPP4BO15327 924 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 KCNN4O15554 427 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 DNAJC6O75061 913 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 ZNF189O75820 626 aaPredicted RBP11.11□□□□□ -0.63
SMAD4-211ENST00000590499 MT-CO3P00414 261 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 CCDC175P0C221 793 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 JUPP14923 745 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 BPIP17213 487 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 HOXB4P17483 251 aaPredicted RBP11.11□□□□□ -0.63
SMAD4-211ENST00000590499 HLA-DPA1P20036 260 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 PSMB4P28070 264 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 ADRA1AP35348 466 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 HMGCLP35914 325 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 ADCY8P40145 1251 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 GNPDA1P46926 289 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 HLTFQ14527 1009 aaKnown RBP eCLIP11.11□□□□□ -0.63
SMAD4-211ENST00000590499 SLC1A5Q15758 541 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 PYCR3Q53H96 274 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 ANKRD20A2Q5SQ80 823 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 MEI1Q5TIA1 1274 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 ANKRD20A1Q5TYW2 823 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 ANKRD20A3Q5VUR7 823 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 ITPRIPL1Q6GPH6 555 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 DARS2Q6PI48 645 aaKnown RBP11.11□□□□□ -0.63
SMAD4-211ENST00000590499 DOK6Q6PKX4 331 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 TAF8Q7Z7C8 310 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 C17orf82Q86X59 251 aaPredicted RBP11.11□□□□□ -0.63
SMAD4-211ENST00000590499 ZNF295-AS1Q8N0V1 137 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 IPMKQ8NFU5 416 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 CCDC110Q8TBZ0 833 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 MAPK15Q8TD08 544 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 ABHD17AQ96GS6 310 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 TRABDQ9H4I3 376 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 GRPEL1Q9HAV7 217 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 SIRPGQ9P1W8 387 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 VPS18Q9P253 973 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 MOSPD1Q9UJG1 213 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 ZMIZ1Q9ULJ6 1067 aa11.11□□□□□ -0.63
SMAD4-211ENST00000590499 ATXN7L1Q9ULK2 861 aaPredicted RBP11.11□□□□□ -0.63
SMAD4-211ENST00000590499 ZFYVE26Q68DK2 2539 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 GOLGA6L9A6NEM1 432 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 C5orf60A6NFR6 353 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 TAF4O00268 1085 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 ANXA9O76027 345 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 SLC4A1P02730 911 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 ATP1A1P05023 1023 aaKnown RBP11.1□□□□□ -0.63
SMAD4-211ENST00000590499 FGF1P05230 155 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 AK4P27144 223 aaPredicted RBP11.1□□□□□ -0.63
SMAD4-211ENST00000590499 PDX1P52945 283 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 GEMP55040 296 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 CTBSQ01459 385 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 ILF3Q12906 894 aaKnown RBP eCLIP11.1□□□□□ -0.63
SMAD4-211ENST00000590499 MSLNQ13421 630 aaPredicted RBP11.1□□□□□ -0.63
SMAD4-211ENST00000590499 CERCAMQ5T4B2 595 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 ALS2CLQ60I27 953 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 PDPK2PQ6A1A2 396 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 CCDC70Q6NSX1 233 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 RANBP10Q6VN20 620 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 LINC00114Q6XXX2 140 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 PROSER1Q86XN7 944 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 SLC25A41Q8N5S1 370 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 TRAM1L1Q8N609 369 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.1□□□□□ -0.63
SMAD4-211ENST00000590499 FAM46DQ8NEK8 389 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 MDM1Q8TC05 714 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 DTX3LQ8TDB6 740 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 CCDC74AQ96AQ1 378 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 PLEKHG4BQ96PX9 1271 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 OR2M4Q96R27 311 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 FERMT1Q9BQL6 677 aa11.1□□□□□ -0.63
SMAD4-211ENST00000590499 ZSCAN5AQ9BUG6 496 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms