RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 ITGB6P18564 788 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 CHRM3P20309 590 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 CD9P21926 228 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 KCNA5P22460 613 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 ATP5F1P24539 256 aaPredicted RBP10.42□□□□□ -0.74
SS18-217ENST00000580958 GRK2P25098 689 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 ETV3P41162 512 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 TNFRSF4P43489 277 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 PRKAA2P54646 552 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 ADARP55265 1226 aaKnown RBP10.42□□□□□ -0.74
SS18-217ENST00000580958 HNRNPH2P55795 449 aaKnown RBP10.42□□□□□ -0.74
SS18-217ENST00000580958 ABCE1P61221 599 aaKnown RBP10.42□□□□□ -0.74
SS18-217ENST00000580958 PFKPQ01813 784 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 IFT88Q13099 833 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 SMAD4Q13485 552 aaKnown RBP10.42□□□□□ -0.74
SS18-217ENST00000580958 ACAP2Q15057 778 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 ACOX1Q15067 660 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 CCDC85BQ15834 202 aaPredicted RBP10.42□□□□□ -0.74
SS18-217ENST00000580958 LIPMQ5VYY2 423 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 PTRHD1Q6GMV3 140 aaKnown RBP10.42□□□□□ -0.74
SS18-217ENST00000580958 FBXL19Q6PCT2 694 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 TXNDC11Q6PKC3 985 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 NAPRTQ6XQN6 538 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 LIPIQ6XZB0 460 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 Q6ZVL8 140 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 DSG4Q86SJ6 1040 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 SPATS2Q86XZ4 545 aaKnown RBP10.42□□□□□ -0.74
SS18-217ENST00000580958 CRLF3Q8IUI8 442 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 SUGP1Q8IWZ8 645 aaKnown RBP10.42□□□□□ -0.74
SS18-217ENST00000580958 ZNF513Q8N8E2 541 aaPredicted RBP10.42□□□□□ -0.74
SS18-217ENST00000580958 ANKS4BQ8N8V4 417 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 TXNDC5Q8NBS9 432 aaKnown RBP10.42□□□□□ -0.74
SS18-217ENST00000580958 OR6Y1Q8NGX8 325 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 GIMAP7Q8NHV1 300 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 RFWD2Q8NHY2 731 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 LKAAEAR1Q8TD35 194 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 CD200R1Q8TD46 325 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 EZH1Q92800 747 aaPredicted RBP10.42□□□□□ -0.74
SS18-217ENST00000580958 SCAMP4Q969E2 229 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 PTERQ96BW5 349 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 ULK4Q96C45 1275 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 PPP1R16AQ96I34 528 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 LRCH3Q96II8 777 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 WRAP53Q9BUR4 548 aaKnown RBP10.42□□□□□ -0.74
SS18-217ENST00000580958 RIOK2Q9BVS4 552 aaKnown RBP10.42□□□□□ -0.74
SS18-217ENST00000580958 GATA5Q9BWX5 397 aaPredicted RBP10.42□□□□□ -0.74
SS18-217ENST00000580958 TRIM55Q9BYV6 548 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 C20orf27Q9GZN8 174 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 ABCG8Q9H221 673 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 FAM83DQ9H4H8 585 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 ALG9Q9H6U8 611 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 UBE2ZQ9H832 354 aaPredicted RBP10.42□□□□□ -0.74
SS18-217ENST00000580958 SARS2Q9NP81 518 aaKnown RBP10.42□□□□□ -0.74
SS18-217ENST00000580958 ACSS2Q9NR19 701 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 DYRK4Q9NR20 520 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 RAD18Q9NS91 495 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 THAP1Q9NVV9 213 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 NFKBIL1Q9UBC1 381 aaPredicted RBP10.42□□□□□ -0.74
SS18-217ENST00000580958 GNPTGQ9UJJ9 305 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 TMPRSS11EQ9UL52 423 aa10.42□□□□□ -0.74
SS18-217ENST00000580958 ZFC3H1O60293 1989 aaKnown RBP10.42□□□□□ -0.74
SS18-217ENST00000580958 RGSL1A5PLK6 1076 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 NEMP2A6NFY4 417 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 TMEM114B3SHH9 223 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 F8W8V4 182 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 H3BMM5 538 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 TGDSO95455 350 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 EGFP01133 1207 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 ADRB3P13945 408 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 GM2AP17900 193 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 ARRB2P32121 409 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 CTHP32929 405 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 LIG3P49916 1009 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 CLCN7P51798 805 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 DCDC1P59894 354 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 ELP6Q0PNE2 266 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 ENPP2Q13822 863 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 PON2Q15165 354 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 OR4D1Q15615 310 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 GPRC6AQ5T6X5 926 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 UGT3A1Q6NUS8 523 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 ATG14Q6ZNE5 492 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 ERN2Q76MJ5 926 aaKnown RBP10.41□□□□□ -0.74
SS18-217ENST00000580958 TECPR1Q7Z6L1 1165 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 ISCA2Q86U28 154 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 CPNE9Q8IYJ1 553 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 CHPFQ8IZ52 775 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 NKAPQ8N5F7 415 aaKnown RBP10.41□□□□□ -0.74
SS18-217ENST00000580958 KCNJ9Q92806 393 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 INPP5DQ92835 1189 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 EXT2Q93063 718 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 MOCOSQ96EN8 888 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 RMDN2Q96LZ7 410 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 SORT1Q99523 831 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 COPS8Q99627 209 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 DERL2Q9GZP9 239 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 PNPOQ9NVS9 261 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 MARCOQ9UEW3 520 aaPredicted RBP10.41□□□□□ -0.74
SS18-217ENST00000580958 LIMD1Q9UGP4 676 aa10.41□□□□□ -0.74
SS18-217ENST00000580958 DCTN4Q9UJW0 460 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms