RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 AIMP2Q13155 320 aaKnown RBP15.89■□□□□ 0.13
VPS53-218ENST00000575207 CNGA3Q16281 694 aa15.89■□□□□ 0.13
VPS53-218ENST00000575207 C3AR1Q16581 482 aa15.89■□□□□ 0.13
VPS53-218ENST00000575207 AGAP7PQ5VUJ5 663 aa15.89■□□□□ 0.13
VPS53-218ENST00000575207 TCERG1LQ5VWI1 586 aa15.89■□□□□ 0.13
VPS53-218ENST00000575207 CES4AQ5XG92 561 aa15.89■□□□□ 0.13
VPS53-218ENST00000575207 IRGCQ6NXR0 463 aa15.89■□□□□ 0.13
VPS53-218ENST00000575207 CERS6Q6ZMG9 384 aa15.89■□□□□ 0.13
VPS53-218ENST00000575207 CHST15Q7LFX5 561 aaPredicted RBP15.89■□□□□ 0.13
VPS53-218ENST00000575207 KMT5CQ86Y97 462 aa15.89■□□□□ 0.13
VPS53-218ENST00000575207 SYTL1Q8IYJ3 562 aa15.89■□□□□ 0.13
VPS53-218ENST00000575207 D2HGDHQ8N465 521 aa15.89■□□□□ 0.13
VPS53-218ENST00000575207 EPS8L1Q8TE68 723 aa15.89■□□□□ 0.13
VPS53-218ENST00000575207 KAT5Q92993 513 aa15.89■□□□□ 0.13
VPS53-218ENST00000575207 ZNF501Q96CX3 271 aaPredicted RBP15.89■□□□□ 0.13
VPS53-218ENST00000575207 AGAP4Q96P64 663 aa15.89■□□□□ 0.13
VPS53-218ENST00000575207 USP28Q96RU2 1077 aa15.89■□□□□ 0.13
VPS53-218ENST00000575207 CPXM1Q96SM3 734 aa15.89■□□□□ 0.13
VPS53-218ENST00000575207 B4GALT6Q9UBX8 382 aa15.89■□□□□ 0.13
VPS53-218ENST00000575207 SEC14L3Q9UDX4 400 aa15.89■□□□□ 0.13
VPS53-218ENST00000575207 KCNK6Q9Y257 313 aa15.89■□□□□ 0.13
VPS53-218ENST00000575207 PROM1O43490 865 aa15.88■□□□□ 0.13
VPS53-218ENST00000575207 SERPINA4P29622 427 aa15.88■□□□□ 0.13
VPS53-218ENST00000575207 ETV3P41162 512 aa15.88■□□□□ 0.13
VPS53-218ENST00000575207 DCAF17Q5H9S7 520 aaPredicted RBP15.88■□□□□ 0.13
VPS53-218ENST00000575207 MANEALQ5VSG8 457 aa15.88■□□□□ 0.13
VPS53-218ENST00000575207 ADAMTSL4Q6UY14 1074 aa15.88■□□□□ 0.13
VPS53-218ENST00000575207 C11orf57Q6ZUT1 292 aaPredicted RBP15.88■□□□□ 0.13
VPS53-218ENST00000575207 FAM183BPQ6ZVS7 135 aa15.88■□□□□ 0.13
VPS53-218ENST00000575207 GRAMD1CQ8IYS0 662 aa15.88■□□□□ 0.13
VPS53-218ENST00000575207 ZNF397Q8NF99 534 aaPredicted RBP15.88■□□□□ 0.13
VPS53-218ENST00000575207 MBD6Q96DN6 1003 aa15.88■□□□□ 0.13
VPS53-218ENST00000575207 LIME1Q9H400 295 aa15.88■□□□□ 0.13
VPS53-218ENST00000575207 EPS8L2Q9H6S3 715 aa15.88■□□□□ 0.13
VPS53-218ENST00000575207 ATP13A3Q9H7F0 1226 aa15.88■□□□□ 0.13
VPS53-218ENST00000575207 PCMTD2Q9NV79 361 aa15.88■□□□□ 0.13
VPS53-218ENST00000575207 KCNN3Q9UGI6 736 aa15.88■□□□□ 0.13
VPS53-218ENST00000575207 TINAGQ9UJW2 476 aa15.88■□□□□ 0.13
VPS53-218ENST00000575207 MEMO1Q9Y316 297 aa15.88■□□□□ 0.13
VPS53-218ENST00000575207 ZANQ9Y493 2812 aa15.87■□□□□ 0.13
VPS53-218ENST00000575207 GOLGA6CA6NDK9 693 aa15.87■□□□□ 0.13
VPS53-218ENST00000575207 GOLGA6BA6NDN3 693 aa15.87■□□□□ 0.13
VPS53-218ENST00000575207 TLCD2A6NGC4 264 aa15.87■□□□□ 0.13
VPS53-218ENST00000575207 SNX2O60749 519 aa15.87■□□□□ 0.13
VPS53-218ENST00000575207 DNAJC6O75061 913 aa15.87■□□□□ 0.13
VPS53-218ENST00000575207 VIPP01282 170 aa15.87■□□□□ 0.13
VPS53-218ENST00000575207 GOLGA6DP0CG33 693 aa15.87■□□□□ 0.13
VPS53-218ENST00000575207 PRAMEF17Q5VTA0 474 aa15.87■□□□□ 0.13
VPS53-218ENST00000575207 TRIM74Q86UV6 250 aa15.87■□□□□ 0.13
VPS53-218ENST00000575207 PPM1KQ8N3J5 372 aa15.87■□□□□ 0.13
VPS53-218ENST00000575207 CATSPER1Q8NEC5 780 aa15.87■□□□□ 0.13
VPS53-218ENST00000575207 MAGEB10Q96LZ2 347 aaPredicted RBP15.87■□□□□ 0.13
VPS53-218ENST00000575207 KLC2Q9H0B6 622 aa15.87■□□□□ 0.13
VPS53-218ENST00000575207 GOLGA6AQ9NYA3 693 aa15.87■□□□□ 0.13
VPS53-218ENST00000575207 ABI3Q9P2A4 366 aa15.87■□□□□ 0.13
VPS53-218ENST00000575207 STAP1Q9ULZ2 295 aa15.87■□□□□ 0.13
VPS53-218ENST00000575207 LDB2O43679 373 aa15.86■□□□□ 0.13
VPS53-218ENST00000575207 HEXIM1O94992 359 aaKnown RBP15.86■□□□□ 0.13
VPS53-218ENST00000575207 DNASE1P24855 282 aa15.86■□□□□ 0.13
VPS53-218ENST00000575207 MST1P26927 711 aa15.86■□□□□ 0.13
VPS53-218ENST00000575207 SLC19A1P41440 591 aa15.86■□□□□ 0.13
VPS53-218ENST00000575207 GPR1P46091 355 aa15.86■□□□□ 0.13
VPS53-218ENST00000575207 CSNK1DP48730 415 aa15.86■□□□□ 0.13
VPS53-218ENST00000575207 SULT1E1P49888 294 aa15.86■□□□□ 0.13
VPS53-218ENST00000575207 MARSP56192 900 aaKnown RBP15.86■□□□□ 0.13
VPS53-218ENST00000575207 PPP1CAP62136 330 aa15.86■□□□□ 0.13
VPS53-218ENST00000575207 HSD11B2P80365 405 aa15.86■□□□□ 0.13
VPS53-218ENST00000575207 NRG1Q02297 640 aaPredicted RBP15.86■□□□□ 0.13
VPS53-218ENST00000575207 Q6ZVL8 140 aa15.86■□□□□ 0.13
VPS53-218ENST00000575207 HSD11B1LQ7Z5J1 315 aa15.86■□□□□ 0.13
VPS53-218ENST00000575207 ZNF354CQ86Y25 554 aa15.86■□□□□ 0.13
VPS53-218ENST00000575207 DMRTC2Q8IXT2 367 aaPredicted RBP15.86■□□□□ 0.13
VPS53-218ENST00000575207 WDTC1Q8N5D0 677 aa15.86■□□□□ 0.13
VPS53-218ENST00000575207 OR1N1Q8NGS0 311 aa15.86■□□□□ 0.13
VPS53-218ENST00000575207 ZNF606Q8WXB4 792 aa15.86■□□□□ 0.13
VPS53-218ENST00000575207 SPOCK2Q92563 424 aa15.86■□□□□ 0.13
VPS53-218ENST00000575207 CLIP3Q96DZ5 547 aa15.86■□□□□ 0.13
VPS53-218ENST00000575207 COX14Q96I36 57 aa15.86■□□□□ 0.13
VPS53-218ENST00000575207 TMX3Q96JJ7 454 aa15.86■□□□□ 0.13
VPS53-218ENST00000575207 NT5C1BQ96P26 610 aa15.86■□□□□ 0.13
VPS53-218ENST00000575207 DPH2Q9BQC3 489 aaPredicted RBP15.86■□□□□ 0.13
VPS53-218ENST00000575207 METTL14Q9HCE5 456 aaKnown RBP15.86■□□□□ 0.13
VPS53-218ENST00000575207 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.86■□□□□ 0.13
VPS53-218ENST00000575207 SCHIP1Q9P0W5 487 aaPredicted RBP15.86■□□□□ 0.13
VPS53-218ENST00000575207 ZNF624Q9P2J8 865 aaPredicted RBP15.86■□□□□ 0.13
VPS53-218ENST00000575207 NEU3Q9UQ49 428 aa15.86■□□□□ 0.13
VPS53-218ENST00000575207 CNTN6Q9UQ52 1028 aa15.86■□□□□ 0.13
VPS53-218ENST00000575207 PRKAB1Q9Y478 270 aa15.86■□□□□ 0.13
VPS53-218ENST00000575207 GTF3C1Q12789 2109 aa15.85■□□□□ 0.13
VPS53-218ENST00000575207 C9J4A7 227 aa15.85■□□□□ 0.13
VPS53-218ENST00000575207 TRAFD1O14545 582 aaPredicted RBP15.85■□□□□ 0.13
VPS53-218ENST00000575207 MED7O43513 233 aa15.85■□□□□ 0.13
VPS53-218ENST00000575207 EPB41P11171 864 aaKnown RBP15.85■□□□□ 0.13
VPS53-218ENST00000575207 SLC6A3Q01959 620 aa15.85■□□□□ 0.13
VPS53-218ENST00000575207 PAK1Q13153 545 aa15.85■□□□□ 0.13
VPS53-218ENST00000575207 PLCL1Q15111 1095 aa15.85■□□□□ 0.13
VPS53-218ENST00000575207 GPR19Q15760 415 aa15.85■□□□□ 0.13
VPS53-218ENST00000575207 PLA2G4EQ3MJ16 856 aa15.85■□□□□ 0.13
VPS53-218ENST00000575207 SHC4Q6S5L8 630 aa15.85■□□□□ 0.13
VPS53-218ENST00000575207 CAMKMTQ7Z624 323 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms