RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	TSPAN7	P41732	249 aa		13.92	□□□□□ -0.18
TPM1-223	ENST00000560445	NAP1L1	P55209	391 aa	Known RBP	13.92	□□□□□ -0.18
TPM1-223	ENST00000560445	CFHR1	Q03591	330 aa		13.92	□□□□□ -0.18
TPM1-223	ENST00000560445	ITGA9	Q13797	1035 aa		13.92	□□□□□ -0.18
TPM1-223	ENST00000560445	PRPSAP1	Q14558	356 aa		13.92	□□□□□ -0.18
TPM1-223	ENST00000560445	IHH	Q14623	411 aa		13.92	□□□□□ -0.18
TPM1-223	ENST00000560445	CHCHD2P9	Q5T1J5	151 aa	Predicted RBP	13.92	□□□□□ -0.18
TPM1-223	ENST00000560445	DCAF12	Q5T6F0	453 aa		13.92	□□□□□ -0.18
TPM1-223	ENST00000560445	IYD	Q6PHW0	289 aa		13.92	□□□□□ -0.18
TPM1-223	ENST00000560445	NPNT	Q6UXI9	565 aa		13.92	□□□□□ -0.18
TPM1-223	ENST00000560445	KDELC2	Q7Z4H8	507 aa		13.92	□□□□□ -0.18
TPM1-223	ENST00000560445	CDKL3	Q8IVW4	592 aa	Predicted RBP	13.92	□□□□□ -0.18
TPM1-223	ENST00000560445	TC2N	Q8N9U0	490 aa		13.92	□□□□□ -0.18
TPM1-223	ENST00000560445	HTR3C	Q8WXA8	447 aa		13.92	□□□□□ -0.18
TPM1-223	ENST00000560445	USP7	Q93009	1102 aa		13.92	□□□□□ -0.18
TPM1-223	ENST00000560445	SGF29	Q96ES7	293 aa		13.92	□□□□□ -0.18
TPM1-223	ENST00000560445	MRFAP1L1	Q96HT8	127 aa		13.92	□□□□□ -0.18
TPM1-223	ENST00000560445	BBC3	Q96PG8	261 aa	Predicted RBP	13.92	□□□□□ -0.18
TPM1-223	ENST00000560445	QKI	Q96PU8	341 aa	Known RBP eCLIP	13.92	□□□□□ -0.18	4e-9	■■■■■ 47.8
TPM1-223	ENST00000560445	FCRL5	Q96RD9	977 aa		13.92	□□□□□ -0.18
TPM1-223	ENST00000560445	CEP41	Q9BYV8	373 aa		13.92	□□□□□ -0.18
TPM1-223	ENST00000560445	OSGEPL1	Q9H4B0	414 aa		13.92	□□□□□ -0.18
TPM1-223	ENST00000560445	CNOT6	Q9ULM6	557 aa	Known RBP	13.92	□□□□□ -0.18
TPM1-223	ENST00000560445	SHOC2	Q9UQ13	582 aa		13.92	□□□□□ -0.18
TPM1-223	ENST00000560445	hCG_1818297	A0A087WSY0	165 aa		13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	PPM1D	O15297	605 aa		13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	CAPN5	O15484	640 aa	Predicted RBP	13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	SNX2	O60749	519 aa		13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	PTMA	P06454	111 aa	Known RBP	13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	HAL	P42357	657 aa		13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	GEM	P55040	296 aa		13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	WNT3A	P56704	352 aa		13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	PDE1B	Q01064	536 aa		13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	C16orf72	Q14CZ0	275 aa		13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	LDLRAP1	Q5SW96	308 aa		13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	BBS12	Q6ZW61	710 aa		13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	PID1	Q7Z2X4	250 aa		13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	GDAP1	Q8TB36	358 aa		13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	LRRN4	Q8WUT4	740 aa		13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	PTCD2	Q8WV60	388 aa	Known RBP	13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	PATE1	Q8WXA2	126 aa		13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	ZNF514	Q96K75	400 aa	Predicted RBP	13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	SMIM14	Q96QK8	99 aa		13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	WDR24	Q96S15	920 aa		13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	EFHD1	Q9BUP0	239 aa		13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	OR2AG1	Q9H205	316 aa		13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	POT1	Q9NUX5	634 aa		13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	ATXN10	Q9UBB4	475 aa		13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	CPNE7	Q9UBL6	633 aa		13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	TBC1D29	Q9UFV1	150 aa		13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	RSPH14	Q9UHP6	348 aa		13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	KCNK6	Q9Y257	313 aa		13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	OAS3	Q9Y6K5	1087 aa	Known RBP	13.91	□□□□□ -0.18
TPM1-223	ENST00000560445	LOC400499	M0QZD8	3231 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445		A0A0U1RQS6	177 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	LOC285095	A0A1B0GVY8	99 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	PMS2P1	A4D2B8	440 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	PDZK1P1	A8MUH7	402 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	BTNL10	A8MVZ5	291 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	GOLGA6L6	A8MZA4	724 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445		H7C0C1	242 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	CHUK	O15111	745 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	TOX3	O15405	576 aa	Predicted RBP	13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	CDK14	O94921	469 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	TJP3	O95049	919 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	NDUFA10	O95299	355 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	MT-CYB	P00156	380 aa	Predicted RBP	13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	VIP	P01282	170 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	PYGM	P11217	842 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	ZNF7	P17097	686 aa	Predicted RBP	13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	ZNF8	P17098	575 aa	Predicted RBP	13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	ITIH1	P19827	911 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	NFKB1	P19838	968 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	IDS	P22304	550 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	SPAM1	P38567	509 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	ATP5O	P48047	213 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	KLHL35	Q6PF15	583 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	CEACAM20	Q6UY09	585 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	GLT6D1	Q7Z4J2	308 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	ZC3H18	Q86VM9	953 aa	Known RBP	13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	FAM129C	Q86XR2	697 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	SFTPA2	Q8IWL1	248 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	GPR26	Q8NDV2	337 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	SPATA22	Q8NHS9	363 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	UBE2Q2	Q8WVN8	375 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	KIAA1143	Q96AT1	154 aa	Predicted RBP	13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	ARHGAP9	Q9BRR9	750 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	TRIT1	Q9H3H1	467 aa	Known RBP	13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	KLC4	Q9NSK0	619 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	SLC39A1	Q9NY26	324 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	PDP2	Q9P2J9	529 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	FEZ2	Q9UHY8	353 aa	Predicted RBP	13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	AAR2	Q9Y312	384 aa	Known RBP	13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	HYOU1	Q9Y4L1	999 aa		13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	EPN1	Q9Y6I3	576 aa	Predicted RBP	13.9	□□□□□ -0.18
TPM1-223	ENST00000560445	MACROD2	A1Z1Q3	448 aa		13.89	□□□□□ -0.19
TPM1-223	ENST00000560445		A6NCN8	305 aa		13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	GOLGA6L9	A6NEM1	432 aa		13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	C2orf81	A6NN90	581 aa		13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	PIRT	P0C851	137 aa		13.89	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms