RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 FLRT2O43155 660 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 PCDHGA12O60330 932 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 CDK14O94921 469 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 VAPBO95292 243 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 CEACAM5P06731 702 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 RHOXF2BP0C7M4 288 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 OGNP20774 298 aaKnown RBP9.97□□□□□ -0.81
USP3-216ENST00000559873 ACRV1P26436 265 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 NMBRP28336 390 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 PMLP29590 882 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 FOXN2P32314 431 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 ELK3P41970 407 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 NSG1P42857 185 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 GNPDA1P46926 289 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 ARSDP51689 593 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 EIF2B5Q13144 721 aaKnown RBP9.97□□□□□ -0.81
USP3-216ENST00000559873 CRYMQ14894 314 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 ANKRD20A4Q4UJ75 823 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 KDM7AQ6ZMT4 941 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 MARK2Q7KZI7 788 aaKnown RBP9.97□□□□□ -0.81
USP3-216ENST00000559873 RD3Q7Z3Z2 195 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 LRRTM4Q86VH4 590 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 SERPINA9Q86WD7 417 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 CCDC25Q86WR0 208 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 TRAPPC5Q8IUR0 188 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 RBFAQ8N0V3 343 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 SDR16C5Q8N3Y7 309 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 FBXO36Q8NEA4 188 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 NETO1Q8TDF5 533 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 PYROXD1Q8WU10 500 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 IFT81Q8WYA0 676 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 ZNF778Q96MU6 729 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 OR2M4Q96R27 311 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 RHOXF2Q9BQY4 288 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 TSSK1BQ9BXA7 367 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 GSDMCQ9BYG8 508 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 OR2AG1Q9H205 316 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 SUDS3Q9H7L9 328 aaPredicted RBP9.97□□□□□ -0.81
USP3-216ENST00000559873 SAYSD1Q9NPB0 183 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 FSCN3Q9NQT6 498 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 TM7SF3Q9NS93 570 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 C20orf96Q9NUD7 363 aaPredicted RBP9.97□□□□□ -0.81
USP3-216ENST00000559873 EVA1BQ9NVM1 165 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 TRNAU1APQ9NX07 287 aaKnown RBP9.97□□□□□ -0.81
USP3-216ENST00000559873 ZDHHC3Q9NYG2 299 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 DMGDHQ9UI17 866 aaKnown RBP9.97□□□□□ -0.81
USP3-216ENST00000559873 CNOT6Q9ULM6 557 aaKnown RBP9.97□□□□□ -0.81
USP3-216ENST00000559873 DOLKQ9UPQ8 538 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.97□□□□□ -0.81
USP3-216ENST00000559873 TP73O15350 636 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 CD3EAPO15446 510 aaKnown RBP9.96□□□□□ -0.82
USP3-216ENST00000559873 GPR39O43194 453 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 AQP9O43315 295 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 GRID2O43424 1007 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 NUAK1O60285 661 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 UGT1A9O60656 530 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 KCNJ13O60928 360 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 SPAG6O75602 509 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 PIAS2O75928 621 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 AP2A2O94973 939 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 GSTA2P09210 222 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 GSTM1P09488 218 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 ZNF7P17097 686 aaPredicted RBP9.96□□□□□ -0.82
USP3-216ENST00000559873 UGT1A6P19224 532 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 SDHBP21912 280 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 UGT1A1P22309 533 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 UGT1A4P22310 534 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 TGM1P22735 817 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 UGT1A3P35503 534 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 UGT1A5P35504 534 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 GRK6P43250 576 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 GSTM4Q03013 218 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 TMEM115Q12893 351 aaPredicted RBP9.96□□□□□ -0.82
USP3-216ENST00000559873 CBLBQ13191 982 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 INSCQ1MX18 579 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 MSS51Q4VC12 460 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 ZNF542PQ5EBM4 170 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 PRRT3Q5FWE3 981 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 TPRG1LQ5T0D9 272 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 PSAPL1Q6NUJ1 521 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 CES3Q6UWW8 571 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 ZDHHC24Q6UX98 284 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 PACS1Q6VY07 963 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 ADGRG6Q86SQ4 1221 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 KCNMB4Q86W47 210 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 LRRC6Q86X45 466 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 GKN2Q86XP6 184 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 PALM2Q8IXS6 379 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 ZNF548Q8NEK5 533 aaPredicted RBP9.96□□□□□ -0.82
USP3-216ENST00000559873 GSDMBQ8TAX9 411 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 OR1E3Q8WZA6 343 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 CDKL2Q92772 493 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 TSACCQ96A04 125 aaPredicted RBP9.96□□□□□ -0.82
USP3-216ENST00000559873 CFAP36Q96G28 342 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 SCARF2Q96GP6 870 aaPredicted RBP9.96□□□□□ -0.82
USP3-216ENST00000559873 TCF12Q99081 682 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 LRRC61Q9BV99 259 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 DUSP23Q9BVJ7 150 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 UGT1A7Q9HAW7 530 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 UGT1A10Q9HAW8 530 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms