RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 PTRHD1Q6GMV3 140 aaKnown RBP16.7■□□□□ 0.26
LDLR-206ENST00000557958 GDPD4Q6W3E5 623 aa16.7■□□□□ 0.26
LDLR-206ENST00000557958 FAM136AQ96C01 138 aa16.7■□□□□ 0.26
LDLR-206ENST00000557958 CMTM5Q96DZ9 223 aa16.7■□□□□ 0.26
LDLR-206ENST00000557958 HEPHQ9BQS7 1158 aa16.7■□□□□ 0.26
LDLR-206ENST00000557958 CCDC28BQ9BUN5 200 aa16.7■□□□□ 0.26
LDLR-206ENST00000557958 P2RY12Q9H244 342 aa16.7■□□□□ 0.26
LDLR-206ENST00000557958 TRPV4Q9HBA0 871 aa16.7■□□□□ 0.26
LDLR-206ENST00000557958 IL26Q9NPH9 171 aa16.7■□□□□ 0.26
LDLR-206ENST00000557958 OBP2AQ9NY56 170 aa16.7■□□□□ 0.26
LDLR-206ENST00000557958 SLCO3A1Q9UIG8 710 aa16.7■□□□□ 0.26
LDLR-206ENST00000557958 FBXO10Q9UK96 956 aa16.7■□□□□ 0.26
LDLR-206ENST00000557958 MED16Q9Y2X0 877 aa16.7■□□□□ 0.26
LDLR-206ENST00000557958 MYOFQ9NZM1 2061 aa16.7■□□□□ 0.26
LDLR-206ENST00000557958 NPIPB15A6NHN6 443 aaPredicted RBP16.69■□□□□ 0.26
LDLR-206ENST00000557958 PRR5-ARHGAP8B1AHC4 643 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 SRPRAP08240 638 aaKnown RBP16.69■□□□□ 0.26
LDLR-206ENST00000557958 CYP2A6P11509 494 aaPredicted RBP16.69■□□□□ 0.26
LDLR-206ENST00000557958 BPIP17213 487 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 PSMC3P17980 439 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 GDI1P31150 447 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 SLC6A11P48066 632 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 ARHGAP8P85298 464 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 DNAL1Q4LDG9 190 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 ZNF678Q5SXM1 525 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 WLSQ5T9L3 541 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 LONP2Q86WA8 852 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 SERPINA9Q86WD7 417 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 C12orf40Q86WS4 652 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 TEX9Q8N6V9 391 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 EXT2Q93063 718 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 LRIG1Q96JA1 1093 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 OSBPL1AQ9BXW6 950 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 TRBV5-4A0A0C4DH59 114 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 SUPT3HB4E1H0 165 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 SLC22A2O15244 555 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 NIPSNAP2O75323 286 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 SUPT3HO75486 399 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 SUPT7LO94864 414 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 ZNF30P17039 623 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 ACRV1P26436 265 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 ST8SIA6P61647 398 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 SATB1Q01826 763 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 UBAP2LQ14157 1087 aaKnown RBP16.69■□□□□ 0.26
LDLR-206ENST00000557958 OR4D1Q15615 310 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 ZRSR2Q15696 482 aaKnown RBP16.69■□□□□ 0.26
LDLR-206ENST00000557958 SLC9B1Q4ZJI4 515 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 LRRC66Q68CR7 880 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 TXNDC11Q6PKC3 985 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 CRTC1Q6UUV9 634 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 CUZD1Q86UP6 607 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 ZSWIM9Q86XI8 627 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 TMPRSS6Q8IU80 811 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 PTGR2Q8N8N7 351 aaPredicted RBP16.69■□□□□ 0.26
LDLR-206ENST00000557958 KDM1BQ8NB78 822 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 OR2A12Q8NGT7 310 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 CD200R1Q8TD46 325 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 PBXIP1Q96AQ6 731 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 ULK4Q96C45 1275 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 NECTIN4Q96NY8 510 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 PLEKHG4BQ96PX9 1271 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 ATOH8Q96SQ7 321 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 MYCBPQ99417 103 aaPredicted RBP16.69■□□□□ 0.26
LDLR-206ENST00000557958 CDX2Q99626 313 aaPredicted RBP16.69■□□□□ 0.26
LDLR-206ENST00000557958 FAM83CQ9BQN1 747 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 NUF2Q9BZD4 464 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 CIPCQ9C0C6 399 aa16.69■□□□□ 0.26
LDLR-206ENST00000557958 MMADHCQ9H3L0 296 aaPredicted RBP16.69■□□□□ 0.26
LDLR-206ENST00000557958 A0A0U1RQS6 177 aa16.68■□□□□ 0.26
LDLR-206ENST00000557958 BTN3A1O00481 513 aa16.68■□□□□ 0.26
LDLR-206ENST00000557958 GRID2O43424 1007 aa16.68■□□□□ 0.26
LDLR-206ENST00000557958 HNRNPLP14866 589 aaKnown RBP eCLIP16.68■□□□□ 0.26
LDLR-206ENST00000557958 PRDX6P30041 224 aa16.68■□□□□ 0.26
LDLR-206ENST00000557958 CCR10P46092 362 aa16.68■□□□□ 0.26
LDLR-206ENST00000557958 RGS4P49798 205 aa16.68■□□□□ 0.26
LDLR-206ENST00000557958 ARHGEF7Q14155 803 aa16.68■□□□□ 0.26
LDLR-206ENST00000557958 PDGFRLQ15198 375 aa16.68■□□□□ 0.26
LDLR-206ENST00000557958 GEN1Q17RS7 908 aa16.68■□□□□ 0.26
LDLR-206ENST00000557958 TREML1Q86YW5 311 aa16.68■□□□□ 0.26
LDLR-206ENST00000557958 FBXO39Q8N4B4 442 aa16.68■□□□□ 0.26
LDLR-206ENST00000557958 SIDT2Q8NBJ9 832 aaKnown RBP16.68■□□□□ 0.26
LDLR-206ENST00000557958 SORCS1Q8WY21 1168 aa16.68■□□□□ 0.26
LDLR-206ENST00000557958 LINGO1Q96FE5 620 aa16.68■□□□□ 0.26
LDLR-206ENST00000557958 TRMT61BQ9BVS5 477 aaKnown RBP16.68■□□□□ 0.26
LDLR-206ENST00000557958 SHCBP1LQ9BZQ2 653 aa16.68■□□□□ 0.26
LDLR-206ENST00000557958 BRD9Q9H8M2 597 aa16.68■□□□□ 0.26
LDLR-206ENST00000557958 CD248Q9HCU0 757 aa16.68■□□□□ 0.26
LDLR-206ENST00000557958 HPS4Q9NQG7 708 aa16.68■□□□□ 0.26
LDLR-206ENST00000557958 SLC27A6Q9Y2P4 619 aa16.68■□□□□ 0.26
LDLR-206ENST00000557958 DHRS7Q9Y394 339 aa16.68■□□□□ 0.26
LDLR-206ENST00000557958 NUP210Q8TEM1 1887 aaPredicted RBP16.67■□□□□ 0.26
LDLR-206ENST00000557958 B2RBV5 119 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 E9PBE3 544 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 GAPDHSO14556 408 aaPredicted RBP16.67■□□□□ 0.26
LDLR-206ENST00000557958 KLHL41O60662 606 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 ADSLP30566 484 aaPredicted RBP16.67■□□□□ 0.26
LDLR-206ENST00000557958 MXRA7P84157 204 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 KDSRQ06136 332 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 RUNX3Q13761 415 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 PDCD2Q16342 344 aaPredicted RBP16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms