RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 HNRNPCL2B2RXH8 293 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 NEMP1O14524 444 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 TPST1O60507 370 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 PSIP1O75475 530 aaKnown RBP13.72□□□□□ -0.21
SHMT2-226ENST00000556825 SOAT2O75908 522 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 ALPPP05187 535 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 CCNYL3P0C7X3 344 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 CSH1P0DML2 217 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 CSH2P0DML3 217 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 HLA-DMAP28067 261 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 RBP5P82980 135 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 DSC1Q08554 894 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 FADDQ13158 208 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 STX5Q13190 355 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 PLD1Q13393 1074 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 TAB1Q15750 504 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 AOC3Q16853 763 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 TREML2Q5T2D2 321 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 MFSD7Q6UXD7 560 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 MCOLN2Q8IZK6 566 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 TRPV3Q8NET8 790 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 GANCQ8TET4 914 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 MYRFLQ96LU7 910 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 RAPGEFL1Q9UHV5 662 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 DERAQ9Y315 318 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 PCDHB3Q9Y5E6 796 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 CYP2D7A0A087X1C5 515 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 PDE8BO95263 885 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 PRKCGP05129 697 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 TFE3P19532 575 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-226ENST00000556825 ZP3P21754 424 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 PSMA3P25788 255 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 GMPRP36959 345 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 AIF1P55008 147 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 GDF10P55107 478 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 GRK1Q15835 563 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 RTP2Q5QGT7 225 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 TEX261Q6UWH6 196 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 TXNRD3Q86VQ6 643 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 TAB3Q8N5C8 712 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-226ENST00000556825 C3orf58Q8NDZ4 430 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 TMC2Q8TDI7 906 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 RBPMSQ93062 196 aaKnown RBP13.72□□□□□ -0.21
SHMT2-226ENST00000556825 NECTIN4Q96NY8 510 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 SDHCQ99643 169 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-226ENST00000556825 ZNF577Q9BSK1 485 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 FAM83DQ9H4H8 585 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 LDAHQ9H6V9 325 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 CHRAC1Q9NRG0 131 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 USP21Q9UK80 565 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 TMX2Q9Y320 296 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 U3KQ87 197 aa13.72□□□□□ -0.21
SHMT2-226ENST00000556825 LACTBL1A8MY62 500 aa13.71□□□□□ -0.21
SHMT2-226ENST00000556825 EEF2KO00418 725 aaKnown RBP13.71□□□□□ -0.21
SHMT2-226ENST00000556825 NFIBO00712 420 aa13.71□□□□□ -0.21
SHMT2-226ENST00000556825 FABP1P07148 127 aa13.71□□□□□ -0.21
SHMT2-226ENST00000556825 RRASP10301 218 aa13.71□□□□□ -0.21
SHMT2-226ENST00000556825 TCF4P15884 667 aa13.71□□□□□ -0.21
SHMT2-226ENST00000556825 CNTFP26441 200 aa13.71□□□□□ -0.21
SHMT2-226ENST00000556825 MTHFRP42898 656 aa13.71□□□□□ -0.21
SHMT2-226ENST00000556825 GDI2P50395 445 aaKnown RBP13.71□□□□□ -0.21
SHMT2-226ENST00000556825 ZIK1Q3SY52 487 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-226ENST00000556825 FAM180BQ6P0A1 224 aa13.71□□□□□ -0.21
SHMT2-226ENST00000556825 SPOCD1Q6ZMY3 1216 aa13.71□□□□□ -0.21
SHMT2-226ENST00000556825 PODNQ7Z5L7 613 aa13.71□□□□□ -0.21
SHMT2-226ENST00000556825 STX12Q86Y82 276 aa13.71□□□□□ -0.21
SHMT2-226ENST00000556825 TIGD4Q8IY51 512 aa13.71□□□□□ -0.21
SHMT2-226ENST00000556825 UNC5BQ8IZJ1 945 aa13.71□□□□□ -0.21
SHMT2-226ENST00000556825 MYDGFQ969H8 173 aa13.71□□□□□ -0.21
SHMT2-226ENST00000556825 CCDC90BQ9GZT6 254 aa13.71□□□□□ -0.21
SHMT2-226ENST00000556825 RACGAP1Q9H0H5 632 aa13.71□□□□□ -0.21
SHMT2-226ENST00000556825 KAT8Q9H7Z6 458 aaKnown RBP13.71□□□□□ -0.21
SHMT2-226ENST00000556825 KMT5AQ9NQR1 393 aa13.71□□□□□ -0.21
SHMT2-226ENST00000556825 KLHL11Q9NVR0 708 aa13.71□□□□□ -0.21
SHMT2-226ENST00000556825 SPATA6Q9NWH7 488 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-226ENST00000556825 PRR12Q9ULL5 1215 aa13.71□□□□□ -0.21
SHMT2-226ENST00000556825 PEX16Q9Y5Y5 336 aa13.71□□□□□ -0.21
SHMT2-226ENST00000556825 PQLC2LA1A4F0 135 aa13.71□□□□□ -0.22
SHMT2-226ENST00000556825 EFCAB9A8MZ26 197 aa13.71□□□□□ -0.22
SHMT2-226ENST00000556825 SNAP23O00161 211 aa13.71□□□□□ -0.22
SHMT2-226ENST00000556825 EDIL3O43854 480 aa13.71□□□□□ -0.22
SHMT2-226ENST00000556825 TLL1O43897 1013 aa13.71□□□□□ -0.22
SHMT2-226ENST00000556825 NRP2O60462 931 aa13.71□□□□□ -0.22
SHMT2-226ENST00000556825 TRIM3O75382 744 aaPredicted RBP13.71□□□□□ -0.22
SHMT2-226ENST00000556825 CNTN5O94779 1100 aa13.71□□□□□ -0.22
SHMT2-226ENST00000556825 GCNT3O95395 438 aa13.71□□□□□ -0.22
SHMT2-226ENST00000556825 EPOP01588 193 aa13.71□□□□□ -0.22
SHMT2-226ENST00000556825 AHSGP02765 367 aa13.71□□□□□ -0.22
SHMT2-226ENST00000556825 PTPN7P35236 360 aa13.71□□□□□ -0.22
SHMT2-226ENST00000556825 RFC2P35250 354 aa13.71□□□□□ -0.22
SHMT2-226ENST00000556825 NUBP1P53384 320 aa13.71□□□□□ -0.22
SHMT2-226ENST00000556825 ZNF91Q05481 1191 aa13.71□□□□□ -0.22
SHMT2-226ENST00000556825 GPR68Q15743 365 aa13.71□□□□□ -0.22
SHMT2-226ENST00000556825 SYT6Q5T7P8 510 aaPredicted RBP13.71□□□□□ -0.22
SHMT2-226ENST00000556825 SUSD4Q5VX71 490 aa13.71□□□□□ -0.22
SHMT2-226ENST00000556825 TMEM198Q66K66 360 aa13.71□□□□□ -0.22
SHMT2-226ENST00000556825 NECAB2Q7Z6G3 386 aa13.71□□□□□ -0.22
SHMT2-226ENST00000556825 COPS5Q92905 334 aa13.71□□□□□ -0.22
SHMT2-226ENST00000556825 KAT5Q92993 513 aa13.71□□□□□ -0.22
SHMT2-226ENST00000556825 MOGAT1Q96PD6 335 aa13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms