RNA–Protein interactions for RNA: ENST00000556315.5

ATXN3-239, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 924 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-239ENST00000556315 ATP11CQ8NB49 1132 aa4.89□□□□□ -1.63
ATXN3-239ENST00000556315 FBXL13Q8NEE6 735 aa4.89□□□□□ -1.63
ATXN3-239ENST00000556315 OR2A12Q8NGT7 310 aa4.89□□□□□ -1.63
ATXN3-239ENST00000556315 C9orf43Q8TAL5 461 aaPredicted RBP4.89□□□□□ -1.63
ATXN3-239ENST00000556315 CALML6Q8TD86 181 aa4.89□□□□□ -1.63
ATXN3-239ENST00000556315 SEMA4DQ92854 862 aa4.89□□□□□ -1.63
ATXN3-239ENST00000556315 MIB2Q96AX9 1013 aa4.89□□□□□ -1.63
ATXN3-239ENST00000556315 C8orf49Q96NF6 230 aa4.89□□□□□ -1.63
ATXN3-239ENST00000556315 USP28Q96RU2 1077 aa4.89□□□□□ -1.63
ATXN3-239ENST00000556315 KLF6Q99612 283 aaPredicted RBP4.89□□□□□ -1.63
ATXN3-239ENST00000556315 PRMT1Q99873 361 aaKnown RBP4.89□□□□□ -1.63
ATXN3-239ENST00000556315 TRIM62Q9BVG3 475 aa4.89□□□□□ -1.63
ATXN3-239ENST00000556315 CPEB1Q9BZB8 566 aaKnown RBP4.89□□□□□ -1.63
ATXN3-239ENST00000556315 CLPBQ9H078 707 aa4.89□□□□□ -1.63
ATXN3-239ENST00000556315 CDH19Q9H159 772 aa4.89□□□□□ -1.63
ATXN3-239ENST00000556315 MMRN2Q9H8L6 949 aa4.89□□□□□ -1.63
ATXN3-239ENST00000556315 ZNF71Q9NQZ8 489 aaPredicted RBP4.89□□□□□ -1.63
ATXN3-239ENST00000556315 FOXJ2Q9P0K8 574 aa4.89□□□□□ -1.63
ATXN3-239ENST00000556315 AKAP7Q9P0M2 348 aaPredicted RBP4.89□□□□□ -1.63
ATXN3-239ENST00000556315 APOBEC3BQ9UH17 382 aaKnown RBP4.89□□□□□ -1.63
ATXN3-239ENST00000556315 XPO7Q9UIA9 1087 aaKnown RBP4.89□□□□□ -1.63
ATXN3-239ENST00000556315 VPS28Q9UK41 221 aa4.89□□□□□ -1.63
ATXN3-239ENST00000556315 NAALADL1Q9UQQ1 740 aa4.89□□□□□ -1.63
ATXN3-239ENST00000556315 TRAF3IP3Q9Y228 551 aa4.89□□□□□ -1.63
ATXN3-239ENST00000556315 HS3ST2Q9Y278 367 aa4.89□□□□□ -1.63
ATXN3-239ENST00000556315 OR51B4Q9Y5P0 310 aa4.89□□□□□ -1.63
ATXN3-239ENST00000556315 FADS3Q9Y5Q0 445 aa4.89□□□□□ -1.63
ATXN3-239ENST00000556315 DOPEY2Q9Y3R5 2298 aa4.89□□□□□ -1.63
ATXN3-239ENST00000556315 UBA6A0AVT1 1052 aaPredicted RBP4.88□□□□□ -1.63
ATXN3-239ENST00000556315 IGLON5A6NGN9 336 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 TMEM110-MUSTN1A8MSY1 372 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 POLR2DO15514 142 aaKnown RBP4.88□□□□□ -1.63
ATXN3-239ENST00000556315 MTSS1O43312 755 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 VPS4BO75351 444 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 CLDN11O75508 207 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 TRUB2O95900 331 aaKnown RBP4.88□□□□□ -1.63
ATXN3-239ENST00000556315 MT-CO1P00395 513 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 PAEPP09466 180 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 ALPIP09923 528 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 TRIM49P0CI25 452 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 TRIM49CP0CI26 452 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 SRCP12931 536 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 ADRB3P13945 408 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 CTSEP14091 401 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 ITIH1P19827 911 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 NR2F2P24468 414 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 PTX3P26022 381 aaPredicted RBP4.88□□□□□ -1.63
ATXN3-239ENST00000556315 ETV5P41161 510 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 NUMBP49757 651 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 PPARDQ03181 441 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 SLC20A2Q08357 652 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 KLRB1Q12918 225 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 MTA1Q13330 715 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 ADAM9Q13443 819 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 CUL2Q13617 745 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 STILQ15468 1287 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 TERF2Q15554 542 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 NFIL3Q16649 462 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 TPRG1LQ5T0D9 272 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 SYPL2Q5VXT5 272 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 FBXL22Q6P050 247 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 GKN2Q86XP6 184 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 PHYKPLQ8IUZ5 450 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 FAM186BQ8IYM0 893 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 RBFAQ8N0V3 343 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 Q8N9G6 341 aaPredicted RBP4.88□□□□□ -1.63
ATXN3-239ENST00000556315 ZNF610Q8N9Z0 462 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 LINC00301Q8NCQ3 95 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 KIAA0895Q8NCT3 520 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 DENND6BQ8NEG7 585 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 RAB7BQ96AH8 199 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 CENPTQ96BT3 561 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 EEF2KMTQ96G04 330 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 C16orf92Q96LL3 132 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 RPRD1AQ96P16 312 aaPredicted RBP4.88□□□□□ -1.63
ATXN3-239ENST00000556315 TAAR9Q96RI9 348 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 FOXB1Q99853 325 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 LRRC61Q9BV99 259 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 EDEM3Q9BZQ6 932 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 MIS12Q9H081 205 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 TCEAL2Q9H3H9 227 aaPredicted RBP4.88□□□□□ -1.63
ATXN3-239ENST00000556315 ZSCAN16Q9H4T2 348 aaPredicted RBP4.88□□□□□ -1.63
ATXN3-239ENST00000556315 EXOC1Q9NV70 894 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 GALNT8Q9NY28 637 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 IL36AQ9UHA7 158 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 APPL1Q9UKG1 709 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 VPS4AQ9UN37 437 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 GPR34Q9UPC5 381 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 TBC1D30Q9Y2I9 924 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 PCDHGA3Q9Y5H0 932 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 CREBBPQ92793 2442 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 COL12A1Q99715 3063 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 TMEM131Q92545 1883 aa4.88□□□□□ -1.63
ATXN3-239ENST00000556315 UBR5O95071 2799 aaPredicted RBP4.87□□□□□ -1.63
ATXN3-239ENST00000556315 MYLKQ15746 1914 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 MYO9AB2RTY4 2548 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 C9orf118A6NHY6 69 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 K7ERQ8 282 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 RNF103O00237 685 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 NKX2-8O15522 239 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms