RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 ITGA1P56199 1179 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 CDK18Q07002 472 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 TUBB3Q13509 450 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 ZNF235Q14590 738 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 IHHQ14623 411 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 PPP1R15BQ5SWA1 713 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 ZC3H18Q86VM9 953 aaKnown RBP12.72□□□□□ -0.37
VPS29-211ENST00000553128 NLRP8Q86W28 1048 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 MCEMP1Q8IX19 187 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 RHOT1Q8IXI2 618 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 ARFGAP1Q8N6T3 406 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 SLC38A9Q8NBW4 561 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 MGME1Q9BQP7 344 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 CNPY3Q9BT09 278 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 UCK1Q9HA47 277 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 KLC4Q9NSK0 619 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 SLC23A2Q9UGH3 650 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 ENTPD4Q9Y227 616 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 FARSAQ9Y285 508 aaKnown RBP12.72□□□□□ -0.37
VPS29-211ENST00000553128 NTNG1Q9Y2I2 539 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 DCHS2Q6V1P9 2916 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 OR5K4A6NMS3 321 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 F5H423 210 aaPredicted RBP12.71□□□□□ -0.37
VPS29-211ENST00000553128 DAPK3O43293 454 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 GRID2O43424 1007 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 FZD6O60353 706 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 TMEM63AO94886 807 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 CLDN7O95471 211 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 VIPP01282 170 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 EBLN1P0CF75 366 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 XRCC1P18887 633 aaPredicted RBP12.71□□□□□ -0.37
VPS29-211ENST00000553128 VARSP26640 1264 aaKnown RBP12.71□□□□□ -0.37
VPS29-211ENST00000553128 NSFP46459 744 aaKnown RBP12.71□□□□□ -0.37
VPS29-211ENST00000553128 RPS15P62841 145 aaKnown RBP12.71□□□□□ -0.37
VPS29-211ENST00000553128 GPS2Q13227 327 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 SEPT7Q16181 437 aaKnown RBP12.71□□□□□ -0.37
VPS29-211ENST00000553128 CLEC16AQ2KHT3 1053 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 PLA2G4EQ3MJ16 856 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 ARMC12Q5T9G4 340 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 SP5Q6BEB4 398 aaPredicted RBP12.71□□□□□ -0.37
VPS29-211ENST00000553128 IRGCQ6NXR0 463 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 DNAJC24Q6P3W2 148 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 MON1BQ7L1V2 547 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 PHF13Q86YI8 300 aaPredicted RBP12.71□□□□□ -0.37
VPS29-211ENST00000553128 SEC14L1Q92503 715 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 INPP5DQ92835 1189 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 ZNF599Q96NL3 588 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 SMAD5Q99717 465 aaKnown RBP12.71□□□□□ -0.37
VPS29-211ENST00000553128 TUBGCP2Q9BSJ2 902 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 SNRNP25Q9BV90 132 aaKnown RBP12.71□□□□□ -0.37
VPS29-211ENST00000553128 GANQ9H2C0 597 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 OSGEPL1Q9H4B0 414 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 PDE7BQ9NP56 450 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 ETNK2Q9NVF9 386 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 DTLQ9NZJ0 730 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 ATXN10Q9UBB4 475 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 PCSK1NQ9UHG2 260 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 RARRES3Q9UL19 164 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 ADGRG1Q9Y653 693 aa12.71□□□□□ -0.37
VPS29-211ENST00000553128 TACC2O95359 2948 aa12.7□□□□□ -0.38
VPS29-211ENST00000553128 A0A0J9YYE9 177 aa12.7□□□□□ -0.38
VPS29-211ENST00000553128 SSU72P8A0A1W2PR75 194 aa12.7□□□□□ -0.38
VPS29-211ENST00000553128 EPHB6O15197 1021 aa12.7□□□□□ -0.38
VPS29-211ENST00000553128 NUAK1O60285 661 aa12.7□□□□□ -0.38
VPS29-211ENST00000553128 TRBC1P01850 177 aa12.7□□□□□ -0.38
VPS29-211ENST00000553128 BRAFP15056 766 aa12.7□□□□□ -0.38
VPS29-211ENST00000553128 ZNF8P17098 575 aaPredicted RBP12.7□□□□□ -0.38
VPS29-211ENST00000553128 GPR18Q14330 331 aa12.7□□□□□ -0.38
VPS29-211ENST00000553128 NAA30Q147X3 362 aaPredicted RBP12.7□□□□□ -0.38
VPS29-211ENST00000553128 PPP6R3Q5H9R7 873 aaPredicted RBP12.7□□□□□ -0.38
VPS29-211ENST00000553128 CRB2Q5IJ48 1285 aa12.7□□□□□ -0.38
VPS29-211ENST00000553128 PRAMEF17Q5VTA0 474 aa12.7□□□□□ -0.38
VPS29-211ENST00000553128 CYP4V2Q6ZWL3 525 aaPredicted RBP12.7□□□□□ -0.38
VPS29-211ENST00000553128 PHYKPLQ8IUZ5 450 aa12.7□□□□□ -0.38
VPS29-211ENST00000553128 IQCKQ8N0W5 287 aa12.7□□□□□ -0.38
VPS29-211ENST00000553128 MR1Q95460 341 aa12.7□□□□□ -0.38
VPS29-211ENST00000553128 SLC41A2Q96JW4 573 aa12.7□□□□□ -0.38
VPS29-211ENST00000553128 CHST8Q9H2A9 424 aa12.7□□□□□ -0.38
VPS29-211ENST00000553128 FAM207AQ9NSI2 230 aaPredicted RBP12.7□□□□□ -0.38
VPS29-211ENST00000553128 GPR83Q9NYM4 423 aa12.7□□□□□ -0.38
VPS29-211ENST00000553128 OR52A4PA6NMU1 304 aa12.69□□□□□ -0.38
VPS29-211ENST00000553128 PES1O00541 588 aaKnown RBP12.69□□□□□ -0.38
VPS29-211ENST00000553128 LRRTM2O43300 516 aa12.69□□□□□ -0.38
VPS29-211ENST00000553128 MAFKO60675 156 aa12.69□□□□□ -0.38
VPS29-211ENST00000553128 GADD45BO75293 160 aaPredicted RBP12.69□□□□□ -0.38
VPS29-211ENST00000553128 CALB1P05937 261 aa12.69□□□□□ -0.38
VPS29-211ENST00000553128 PYGLP06737 847 aa12.69□□□□□ -0.38
VPS29-211ENST00000553128 JAM2P57087 298 aa12.69□□□□□ -0.38
VPS29-211ENST00000553128 DPYSQ14117 519 aa12.69□□□□□ -0.38
VPS29-211ENST00000553128 HENMT1Q5T8I9 393 aaKnown RBP12.69□□□□□ -0.38
VPS29-211ENST00000553128 CRTC3Q6UUV7 619 aa12.69□□□□□ -0.38
VPS29-211ENST00000553128 ZNF517Q6ZMY9 492 aaPredicted RBP12.69□□□□□ -0.38
VPS29-211ENST00000553128 TRIM48Q8IWZ4 208 aa12.69□□□□□ -0.38
VPS29-211ENST00000553128 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.69□□□□□ -0.38
VPS29-211ENST00000553128 ZBTB2Q8N680 514 aa12.69□□□□□ -0.38
VPS29-211ENST00000553128 AOPEPQ8N6M6 819 aa12.69□□□□□ -0.38
VPS29-211ENST00000553128 ENDOVQ8N8Q3 282 aaKnown RBP12.69□□□□□ -0.38
VPS29-211ENST00000553128 GLIS1Q8NBF1 620 aa12.69□□□□□ -0.38
VPS29-211ENST00000553128 SIDT2Q8NBJ9 832 aaKnown RBP12.69□□□□□ -0.38
VPS29-211ENST00000553128 BARD1Q99728 777 aaKnown RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms