RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 BRD8Q9H0E9 1235 aa12.66□□□□□ -0.38
USP28-212ENST00000544750 AKIRIN1Q9H9L7 192 aaPredicted RBP12.66□□□□□ -0.38
USP28-212ENST00000544750 SEPT11Q9NVA2 429 aaKnown RBP12.66□□□□□ -0.38
USP28-212ENST00000544750 RCOR3Q9P2K3 495 aaPredicted RBP12.66□□□□□ -0.38
USP28-212ENST00000544750 PADI1Q9ULC6 663 aa12.66□□□□□ -0.38
USP28-212ENST00000544750 MYO6Q9UM54 1294 aa12.66□□□□□ -0.38
USP28-212ENST00000544750 ANKRD17O75179 2603 aaKnown RBP12.66□□□□□ -0.38
USP28-212ENST00000544750 PIKFYVEQ9Y2I7 2098 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 PIPSLA2A3N6 862 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 LRRC53A6NM62 1247 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 C21orf140B9A014 251 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 PRPSAP2O60256 369 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 SNX2O60749 519 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 LRCH4O75427 683 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 TIAF1O95411 115 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 CLDN7O95471 211 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 CLDN1O95832 211 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 DESP17661 470 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 AMPD1P23109 780 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 DCTP40126 519 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 SLC19A1P41440 591 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 LEPRP48357 1165 aaKnown RBP12.65□□□□□ -0.38
USP28-212ENST00000544750 SEPHS1P49903 392 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 CDH6P55285 790 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 DPYSL2Q16555 572 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 MARC1Q5VT66 337 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 CPZQ66K79 652 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 PRSS42Q7Z5A4 293 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 POLNQ7Z5Q5 900 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 RASGRP3Q8IV61 690 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 BBS5Q8N3I7 341 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 LYSMD1Q96S90 227 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 RUFY1Q96T51 708 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 CARD9Q9H257 536 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 PARVAQ9NVD7 372 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 SEMA5BQ9P283 1151 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 ZNF624Q9P2J8 865 aaPredicted RBP12.65□□□□□ -0.38
USP28-212ENST00000544750 CCDC88CQ9P219 2028 aa12.65□□□□□ -0.38
USP28-212ENST00000544750 MDC1Q14676 2089 aaKnown RBP12.65□□□□□ -0.39
USP28-212ENST00000544750 TCP11X1B4DZS4 312 aa12.64□□□□□ -0.39
USP28-212ENST00000544750 ATMINO43313 823 aaPredicted RBP12.64□□□□□ -0.39
USP28-212ENST00000544750 GRID2O43424 1007 aa12.64□□□□□ -0.39
USP28-212ENST00000544750 KIF1CO43896 1103 aaKnown RBP12.64□□□□□ -0.39
USP28-212ENST00000544750 UBXN7O94888 489 aa12.64□□□□□ -0.39
USP28-212ENST00000544750 MT-ND3P03897 115 aa12.64□□□□□ -0.39
USP28-212ENST00000544750 CCNYL3P0C7X3 344 aa12.64□□□□□ -0.39
USP28-212ENST00000544750 FERP16591 822 aa12.64□□□□□ -0.39
USP28-212ENST00000544750 TYRP1P17643 537 aa12.64□□□□□ -0.39
USP28-212ENST00000544750 IL1R2P27930 398 aa12.64□□□□□ -0.39
USP28-212ENST00000544750 INPP5JQ15735 1006 aaPredicted RBP12.64□□□□□ -0.39
USP28-212ENST00000544750 UGT8Q16880 541 aa12.64□□□□□ -0.39
USP28-212ENST00000544750 EIF2S3LQ2VIR3 472 aaKnown RBP12.64□□□□□ -0.39
USP28-212ENST00000544750 PRR30Q53SZ7 412 aaPredicted RBP12.64□□□□□ -0.39
USP28-212ENST00000544750 FIGNQ5HY92 759 aa12.64□□□□□ -0.39
USP28-212ENST00000544750 MAMDC2Q7Z304 686 aaPredicted RBP12.64□□□□□ -0.39
USP28-212ENST00000544750 NDUFAF2Q8N183 169 aa12.64□□□□□ -0.39
USP28-212ENST00000544750 Q8NA96 180 aa12.64□□□□□ -0.39
USP28-212ENST00000544750 RSC1A1Q92681 617 aa12.64□□□□□ -0.39
USP28-212ENST00000544750 TGM7Q96PF1 710 aa12.64□□□□□ -0.39
USP28-212ENST00000544750 SLC25A23Q9BV35 468 aa12.64□□□□□ -0.39
USP28-212ENST00000544750 ACTL8Q9H568 366 aa12.64□□□□□ -0.39
USP28-212ENST00000544750 ZWILCHQ9H900 591 aa12.64□□□□□ -0.39
USP28-212ENST00000544750 NT5MQ9NPB1 228 aa12.64□□□□□ -0.39
USP28-212ENST00000544750 EPHA6Q9UF33 1036 aa12.64□□□□□ -0.39
USP28-212ENST00000544750 LNPEPQ9UIQ6 1025 aa12.64□□□□□ -0.39
USP28-212ENST00000544750 POLEQ07864 2286 aa12.64□□□□□ -0.39
USP28-212ENST00000544750 DIDO1Q9BTC0 2240 aaKnown RBP12.64□□□□□ -0.39
USP28-212ENST00000544750 PCSK5Q92824 1860 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 GOLGA6L19H0YKK7 550 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 CEACAM4O75871 244 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 RNF8O76064 485 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 TCF4P15884 667 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 ZNF8P17098 575 aaPredicted RBP12.63□□□□□ -0.39
USP28-212ENST00000544750 NELFEP18615 380 aaKnown RBP12.63□□□□□ -0.39
USP28-212ENST00000544750 CASP14P31944 242 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 PRKCIP41743 596 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 CAPZBP47756 277 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 SPINT3P49223 89 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 PGDP52209 483 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 UBASH3AP57075 661 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 TPM4P67936 248 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 MRPL49Q13405 166 aaKnown RBP12.63□□□□□ -0.39
USP28-212ENST00000544750 IL10RAQ13651 578 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 TMCO3Q6UWJ1 677 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 PPP1R3BQ86XI6 285 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 ATPAF2Q8N5M1 289 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 THAP4Q8WY91 577 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 SEC14L1Q92503 715 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 TCTN2Q96GX1 697 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 ELMO2Q96JJ3 720 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 FCRL4Q96PJ5 515 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 CSPG4P5Q96PW8 444 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 TDRD1Q9BXT4 1180 aaKnown RBP12.63□□□□□ -0.39
USP28-212ENST00000544750 RAB33BQ9H082 229 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 TSPY26PQ9H489 355 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 KLC4Q9NSK0 619 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 AIPL1Q9NZN9 384 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 IFNKQ9P0W0 207 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 ATXN10Q9UBB4 475 aa12.63□□□□□ -0.39
USP28-212ENST00000544750 SLC23A2Q9UGH3 650 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms