RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 FEM1CQ96JP0 617 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 CCNL2Q96S94 520 aaPredicted RBP8.84□□□□□ -0.99
VPS13D-212ENST00000543766 LGMNQ99538 433 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 CCDC59Q9P031 241 aaKnown RBP8.84□□□□□ -0.99
VPS13D-212ENST00000543766 MIOXQ9UGB7 285 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 DENND2AQ9ULE3 1009 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 ALG5Q9Y673 324 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 LOC100653049A0A140TA62 436 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 TMEM210A6NLX4 147 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 A8MXE2 369 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 SLC22A1O15245 554 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 KRT34O76011 436 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 RECQL5O94762 991 aaPredicted RBP8.84□□□□□ -0.99
VPS13D-212ENST00000543766 EYA4O95677 639 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 CD3GP09693 182 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 PHKG2P15735 406 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 PSMD4P55036 377 aaKnown RBP8.84□□□□□ -0.99
VPS13D-212ENST00000543766 CREMQ03060 361 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 KCNH2Q12809 1159 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 TDRD12Q587J7 1177 aaKnown RBP8.84□□□□□ -0.99
VPS13D-212ENST00000543766 NOMO2Q5JPE7 1267 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 TAC4Q86UU9 113 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 CCDC103Q8IW40 242 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 ARHGEF19Q8IW93 802 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 DCP1BQ8IZD4 617 aaKnown RBP8.84□□□□□ -0.99
VPS13D-212ENST00000543766 OR9A2Q8NGT5 310 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 ZFP28Q8NHY6 868 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.84□□□□□ -0.992e-6■■■■■ 35.6
VPS13D-212ENST00000543766 FOXJ1Q92949 421 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 ERGIC2Q96RQ1 377 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 HINT2Q9BX68 163 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 SLC52A2Q9HAB3 445 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 VPS54Q9P1Q0 977 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 CA5BQ9Y2D0 317 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 DTNAQ9Y4J8 743 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 SUN1O94901 812 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 PGK1P00558 417 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 PCCAP05165 728 aaPredicted RBP8.84□□□□□ -0.99
VPS13D-212ENST00000543766 HBQ1P09105 142 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 PRPS2P11908 318 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 RBL1P28749 1068 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 HMGCLP35914 325 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 WNT5AP41221 380 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 RPS3AP61247 264 aaKnown RBP8.84□□□□□ -0.99
VPS13D-212ENST00000543766 HTD2P86397 168 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 PRKCZQ05513 592 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 MTM1Q13496 603 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 INTS6LQ5JSJ4 861 aaKnown RBP8.84□□□□□ -0.99
VPS13D-212ENST00000543766 KIAA1841Q6NSI8 718 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 RPUSD3Q6P087 351 aaKnown RBP8.84□□□□□ -0.99
VPS13D-212ENST00000543766 POTEHQ6S545 545 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 MPRIPQ6WCQ1 1025 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 C15orf52Q6ZUT6 534 aaKnown RBP8.84□□□□□ -0.99
VPS13D-212ENST00000543766 HPS6Q86YV9 775 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 SULF2Q8IWU5 870 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 BEND7Q8N7W2 519 aaPredicted RBP8.84□□□□□ -0.99
VPS13D-212ENST00000543766 WASF3Q9UPY6 502 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 DTX4Q9Y2E6 619 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 TESMINQ9Y4I5 508 aa8.84□□□□□ -0.99
VPS13D-212ENST00000543766 COL5A2P05997 1499 aaPredicted RBP8.83□□□□□ -1
VPS13D-212ENST00000543766 TNS2Q63HR2 1409 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 ZBTB5O15062 677 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 AP1G1O43747 822 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 SCO2O43819 266 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 VAMP5O95183 116 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 GCNT3O95395 438 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 SERPINA3P01011 423 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 MMP1P03956 469 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 ASGR2P07307 311 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 ACADLP28330 430 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 DGKGP49619 791 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 EPHA5P54756 1037 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 TNFRSF17Q02223 184 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 GRIK2Q13002 908 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 SLC39A6Q13433 755 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 DNASE1L3Q13609 305 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 TP53BP2Q13625 1128 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 TOR2AQ5JU69 321 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 MIIPQ5JXC2 388 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 ACER2Q5QJU3 275 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 FAM180AQ6UWF9 173 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 MCEMP1Q8IX19 187 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 AGGF1Q8N302 714 aaeCLIP8.83□□□□□ -1
VPS13D-212ENST00000543766 GMCL1P1Q8NEA9 526 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 SLC7A6OSQ96CW6 309 aaPredicted RBP8.83□□□□□ -1
VPS13D-212ENST00000543766 FAM111AQ96PZ2 611 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 PIMREGQ9BSJ6 248 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 IFIH1Q9BYX4 1025 aaKnown RBP8.83□□□□□ -1
VPS13D-212ENST00000543766 FOXP1Q9H334 677 aaPredicted RBP8.83□□□□□ -1
VPS13D-212ENST00000543766 OPA3Q9H6K4 179 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 SLC38A7Q9NVC3 462 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 EIF3KQ9UBQ5 218 aaKnown RBP8.83□□□□□ -1
VPS13D-212ENST00000543766 C2orf92A0A1B0GVN3 265 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 CCDC182A6NF36 153 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 LAD1O00515 517 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 ARP10275 920 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 RAB3AP20336 220 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 ZNF10P21506 573 aaPredicted RBP8.83□□□□□ -1
VPS13D-212ENST00000543766 S100PP25815 95 aa8.83□□□□□ -1
VPS13D-212ENST00000543766 RORAP35398 523 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms