RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 URB1O60287 2271 aaKnown RBP14.02□□□□□ -0.16
USP28-209ENST00000540925 PMS2P1A4D2B8 440 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 AGAP14A8MT82 685 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 PPM1DO15297 605 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 GPR39O43194 453 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 BUD23O43709 281 aaKnown RBP14.02□□□□□ -0.17
USP28-209ENST00000540925 VEGFDO43915 354 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 MPOP05164 745 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 CCKBRP32239 447 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 SPAM1P38567 509 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 TNNT3P45378 269 aaPredicted RBP14.02□□□□□ -0.17
USP28-209ENST00000540925 GPR3P46089 330 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 ZNF140P52738 457 aaPredicted RBP14.02□□□□□ -0.17
USP28-209ENST00000540925 SQSTM1Q13501 440 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 PRPSAP1Q14558 356 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 PTPRCAPQ14761 206 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 RPS6KA1Q15418 735 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 TAF1AQ15573 450 aaPredicted RBP14.02□□□□□ -0.17
USP28-209ENST00000540925 CHRNA6Q15825 494 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 TBC1D25Q3MII6 688 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 CHCHD2P9Q5T1J5 151 aaPredicted RBP14.02□□□□□ -0.17
USP28-209ENST00000540925 SEL1L2Q5TEA6 688 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 IYDQ6PHW0 289 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 CHST15Q7LFX5 561 aaPredicted RBP14.02□□□□□ -0.17
USP28-209ENST00000540925 SLITRK4Q8IW52 837 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 DDHD1Q8NEL9 900 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 BRSK1Q8TDC3 778 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 SLC37A2Q8TED4 501 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 GFM1Q96RP9 751 aaKnown RBP14.02□□□□□ -0.17
USP28-209ENST00000540925 TBL1YQ9BQ87 522 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 APOL2Q9BQE5 337 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 SLC23A2Q9UGH3 650 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 FEZ2Q9UHY8 353 aaPredicted RBP14.02□□□□□ -0.17
USP28-209ENST00000540925 PPP2R2CQ9Y2T4 447 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 PCDHGA8Q9Y5G5 932 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 UNC13CQ8NB66 2214 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 KIF26BQ2KJY2 2108 aa14.02□□□□□ -0.17
USP28-209ENST00000540925 GLYATL1P3A0A0U1RQE8 302 aa14.01□□□□□ -0.17
USP28-209ENST00000540925 LDB2O43679 373 aa14.01□□□□□ -0.17
USP28-209ENST00000540925 MTX2O75431 263 aa14.01□□□□□ -0.17
USP28-209ENST00000540925 ACP5P13686 325 aa14.01□□□□□ -0.17
USP28-209ENST00000540925 LPOP22079 712 aaPredicted RBP14.01□□□□□ -0.17
USP28-209ENST00000540925 PSMA3P25788 255 aa14.01□□□□□ -0.17
USP28-209ENST00000540925 STIP1P31948 543 aaKnown RBP14.01□□□□□ -0.17
USP28-209ENST00000540925 GABREP78334 506 aa14.01□□□□□ -0.17
USP28-209ENST00000540925 XIAPP98170 497 aa14.01□□□□□ -0.17
USP28-209ENST00000540925 SPARCL1Q14515 664 aa14.01□□□□□ -0.17
USP28-209ENST00000540925 CLPPQ16740 277 aaPredicted RBP14.01□□□□□ -0.17
USP28-209ENST00000540925 P3H1Q32P28 736 aa14.01□□□□□ -0.17
USP28-209ENST00000540925 FAM151BQ6UXP7 276 aa14.01□□□□□ -0.17
USP28-209ENST00000540925 ARHGEF18Q6ZSZ5 1173 aa14.01□□□□□ -0.17
USP28-209ENST00000540925 Q8N9G6 341 aaPredicted RBP14.01□□□□□ -0.17
USP28-209ENST00000540925 TRIM58Q8NG06 486 aa14.01□□□□□ -0.17
USP28-209ENST00000540925 OR4K2Q8NGD2 314 aa14.01□□□□□ -0.17
USP28-209ENST00000540925 TIMM29Q9BSF4 260 aa14.01□□□□□ -0.17
USP28-209ENST00000540925 SATB2Q9UPW6 733 aa14.01□□□□□ -0.17
USP28-209ENST00000540925 KCNK6Q9Y257 313 aa14.01□□□□□ -0.17
USP28-209ENST00000540925 PKP3Q9Y446 797 aa14.01□□□□□ -0.17
USP28-209ENST00000540925 KCTD3Q9Y597 815 aa14.01□□□□□ -0.17
USP28-209ENST00000540925 AK5Q9Y6K8 562 aa14.01□□□□□ -0.17
USP28-209ENST00000540925 FLNBO75369 2602 aaKnown RBP14.01□□□□□ -0.17
USP28-209ENST00000540925 CCDC187A0A096LP49 1063 aa14□□□□□ -0.17
USP28-209ENST00000540925 CDRT15L2A8MXV6 281 aa14□□□□□ -0.17
USP28-209ENST00000540925 KMOO15229 486 aa14□□□□□ -0.17
USP28-209ENST00000540925 STX7O15400 261 aaKnown RBP14□□□□□ -0.17
USP28-209ENST00000540925 UGT1A9O60656 530 aa14□□□□□ -0.17
USP28-209ENST00000540925 CDK14O94921 469 aa14□□□□□ -0.17
USP28-209ENST00000540925 AP2A1O95782 977 aa14□□□□□ -0.17
USP28-209ENST00000540925 PTMAP06454 111 aaKnown RBP14□□□□□ -0.17
USP28-209ENST00000540925 F3P13726 295 aa14□□□□□ -0.17
USP28-209ENST00000540925 UGT1A6P19224 532 aa14□□□□□ -0.17
USP28-209ENST00000540925 UGT1A1P22309 533 aa14□□□□□ -0.17
USP28-209ENST00000540925 UGT1A4P22310 534 aa14□□□□□ -0.17
USP28-209ENST00000540925 CD1CP29017 333 aa14□□□□□ -0.17
USP28-209ENST00000540925 UGT1A3P35503 534 aa14□□□□□ -0.17
USP28-209ENST00000540925 UGT1A5P35504 534 aa14□□□□□ -0.17
USP28-209ENST00000540925 EIF2S3P41091 472 aaKnown RBP14□□□□□ -0.17
USP28-209ENST00000540925 OR1D5P58170 312 aa14□□□□□ -0.17
USP28-209ENST00000540925 CFHR1Q03591 330 aa14□□□□□ -0.17
USP28-209ENST00000540925 TMEM115Q12893 351 aaPredicted RBP14□□□□□ -0.17
USP28-209ENST00000540925 ITGA9Q13797 1035 aa14□□□□□ -0.17
USP28-209ENST00000540925 DRICH1Q6PGQ1 229 aaPredicted RBP14□□□□□ -0.17
USP28-209ENST00000540925 LRRTM4Q86VH4 590 aa14□□□□□ -0.17
USP28-209ENST00000540925 LSMEM2Q8N112 164 aa14□□□□□ -0.17
USP28-209ENST00000540925 WDR36Q8NI36 951 aaKnown RBP14□□□□□ -0.17
USP28-209ENST00000540925 ZNF578Q96N58 590 aaPredicted RBP14□□□□□ -0.17
USP28-209ENST00000540925 SLC46A1Q96NT5 459 aa14□□□□□ -0.17
USP28-209ENST00000540925 ALS2CR12Q96Q35 445 aa14□□□□□ -0.17
USP28-209ENST00000540925 LRRC40Q9H9A6 602 aa14□□□□□ -0.17
USP28-209ENST00000540925 UGT1A7Q9HAW7 530 aa14□□□□□ -0.17
USP28-209ENST00000540925 UGT1A10Q9HAW8 530 aa14□□□□□ -0.17
USP28-209ENST00000540925 UGT1A8Q9HAW9 530 aa14□□□□□ -0.17
USP28-209ENST00000540925 SARS2Q9NP81 518 aaKnown RBP14□□□□□ -0.17
USP28-209ENST00000540925 ATXN7L1Q9ULK2 861 aaPredicted RBP14□□□□□ -0.17
USP28-209ENST00000540925 IGHV1OR21-1A0A087WYE8 117 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 C2orf81A6NN90 581 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 RHPN2P1A8MT19 583 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 TMX2-CTNND1H3BSU7 103 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 SUN1O94901 812 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 PRAMEF1O95521 474 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms