RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 OR2AG1Q9H205 316 aa12.97□□□□□ -0.33
RTN3-207ENST00000536011 OSGEPL1Q9H4B0 414 aa12.97□□□□□ -0.33
RTN3-207ENST00000536011 UCK1Q9HA47 277 aa12.97□□□□□ -0.33
RTN3-207ENST00000536011 GLOD4Q9HC38 313 aa12.97□□□□□ -0.33
RTN3-207ENST00000536011 LUC7LQ9NQ29 371 aaKnown RBP12.97□□□□□ -0.33
RTN3-207ENST00000536011 ATXN10Q9UBB4 475 aa12.97□□□□□ -0.33
RTN3-207ENST00000536011 CPNE7Q9UBL6 633 aa12.97□□□□□ -0.33
RTN3-207ENST00000536011 SHOC2Q9UQ13 582 aa12.97□□□□□ -0.33
RTN3-207ENST00000536011 HEMK1Q9Y5R4 338 aaPredicted RBP12.97□□□□□ -0.33
RTN3-207ENST00000536011 A6NCN8 305 aa12.96□□□□□ -0.33
RTN3-207ENST00000536011 LILRA5A6NI73 299 aa12.96□□□□□ -0.33
RTN3-207ENST00000536011 EFCAB7A8K855 629 aa12.96□□□□□ -0.33
RTN3-207ENST00000536011 AKR1B15C9JRZ8 316 aaPredicted RBP12.96□□□□□ -0.33
RTN3-207ENST00000536011 KMOO15229 486 aa12.96□□□□□ -0.33
RTN3-207ENST00000536011 CAPN5O15484 640 aaPredicted RBP12.96□□□□□ -0.33
RTN3-207ENST00000536011 EML2O95834 649 aa12.96□□□□□ -0.33
RTN3-207ENST00000536011 TNNT1P13805 278 aa12.96□□□□□ -0.33
RTN3-207ENST00000536011 MPSTP25325 297 aa12.96□□□□□ -0.33
RTN3-207ENST00000536011 MAPK9P45984 424 aa12.96□□□□□ -0.33
RTN3-207ENST00000536011 PRKD1Q15139 912 aaPredicted RBP12.96□□□□□ -0.33
RTN3-207ENST00000536011 TEX44Q53QW1 395 aa12.96□□□□□ -0.33
RTN3-207ENST00000536011 NPNTQ6UXI9 565 aa12.96□□□□□ -0.33
RTN3-207ENST00000536011 CEACAM20Q6UY09 585 aa12.96□□□□□ -0.33
RTN3-207ENST00000536011 TMC3Q7Z5M5 1100 aa12.96□□□□□ -0.33
RTN3-207ENST00000536011 LRRTM4Q86VH4 590 aa12.96□□□□□ -0.33
RTN3-207ENST00000536011 ZNF761Q86XN6 746 aaPredicted RBP12.96□□□□□ -0.33
RTN3-207ENST00000536011 PLXDC1Q8IUK5 500 aa12.96□□□□□ -0.33
RTN3-207ENST00000536011 KIAA1143Q96AT1 154 aaPredicted RBP12.96□□□□□ -0.33
RTN3-207ENST00000536011 TADA1Q96BN2 335 aa12.96□□□□□ -0.33
RTN3-207ENST00000536011 TEKT5Q96M29 485 aa12.96□□□□□ -0.33
RTN3-207ENST00000536011 TIMM29Q9BSF4 260 aa12.96□□□□□ -0.33
RTN3-207ENST00000536011 FAM117AQ9C073 453 aa12.96□□□□□ -0.33
RTN3-207ENST00000536011 ZCCHC2Q9C0B9 1178 aaKnown RBP12.96□□□□□ -0.33
RTN3-207ENST00000536011 SEMA4CQ9C0C4 833 aa12.96□□□□□ -0.33
RTN3-207ENST00000536011 TRABDQ9H4I3 376 aa12.96□□□□□ -0.33
RTN3-207ENST00000536011 TMEM9Q9P0T7 183 aa12.96□□□□□ -0.33
RTN3-207ENST00000536011 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.96□□□□□ -0.33
RTN3-207ENST00000536011 TENM4Q6N022 2769 aa12.96□□□□□ -0.34
RTN3-207ENST00000536011 ASH1LQ9NR48 2969 aaKnown RBP12.96□□□□□ -0.34
RTN3-207ENST00000536011 SPTA1P02549 2419 aa12.96□□□□□ -0.34
RTN3-207ENST00000536011 PDZK1P1A8MUH7 402 aa12.95□□□□□ -0.34
RTN3-207ENST00000536011 CHUKO15111 745 aa12.95□□□□□ -0.34
RTN3-207ENST00000536011 PMPCBO75439 489 aa12.95□□□□□ -0.34
RTN3-207ENST00000536011 PIRTP0C851 137 aa12.95□□□□□ -0.34
RTN3-207ENST00000536011 ZNF8P17098 575 aaPredicted RBP12.95□□□□□ -0.34
RTN3-207ENST00000536011 COMTP21964 271 aa12.95□□□□□ -0.34
RTN3-207ENST00000536011 UGT1A3P35503 534 aa12.95□□□□□ -0.34
RTN3-207ENST00000536011 CDKN2BP42772 138 aa12.95□□□□□ -0.34
RTN3-207ENST00000536011 HADHBP55084 474 aaKnown RBP12.95□□□□□ -0.34
RTN3-207ENST00000536011 GTF2H3Q13889 308 aa12.95□□□□□ -0.34
RTN3-207ENST00000536011 SNAP47Q5SQN1 464 aa12.95□□□□□ -0.34
RTN3-207ENST00000536011 MFSD7Q6UXD7 560 aa12.95□□□□□ -0.34
RTN3-207ENST00000536011 RBM12BQ8IXT5 1001 aaKnown RBP12.95□□□□□ -0.34
RTN3-207ENST00000536011 CACNA2D3Q8IZS8 1091 aa12.95□□□□□ -0.34
RTN3-207ENST00000536011 GPR26Q8NDV2 337 aa12.95□□□□□ -0.34
RTN3-207ENST00000536011 P3H4Q92791 437 aa12.95□□□□□ -0.34
RTN3-207ENST00000536011 EXTL1Q92935 676 aa12.95□□□□□ -0.34
RTN3-207ENST00000536011 NKD1Q969G9 470 aa12.95□□□□□ -0.34
RTN3-207ENST00000536011 TTC25Q96NG3 672 aa12.95□□□□□ -0.34
RTN3-207ENST00000536011 VPS35Q96QK1 796 aa12.95□□□□□ -0.34
RTN3-207ENST00000536011 VAT1Q99536 393 aa12.95□□□□□ -0.34
RTN3-207ENST00000536011 FERMT1Q9BQL6 677 aa12.95□□□□□ -0.34
RTN3-207ENST00000536011 EFHD1Q9BUP0 239 aa12.95□□□□□ -0.34
RTN3-207ENST00000536011 KLC4Q9NSK0 619 aa12.95□□□□□ -0.34
RTN3-207ENST00000536011 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.95□□□□□ -0.343e-7■■■■□ 22.8
RTN3-207ENST00000536011 HACD3Q9P035 362 aa12.95□□□□□ -0.34
RTN3-207ENST00000536011 KLHL8Q9P2G9 620 aaPredicted RBP12.95□□□□□ -0.34
RTN3-207ENST00000536011 FAM153AQ9UHL3 310 aa12.95□□□□□ -0.34
RTN3-207ENST00000536011 PCYT1BQ9Y5K3 369 aaPredicted RBP12.95□□□□□ -0.34
RTN3-207ENST00000536011 B3GALT1Q9Y5Z6 326 aa12.95□□□□□ -0.34
RTN3-207ENST00000536011 MN1Q10571 1320 aaPredicted RBP12.94□□□□□ -0.34
RTN3-207ENST00000536011 A8MU76 341 aa12.94□□□□□ -0.34
RTN3-207ENST00000536011 SLC28A2O43868 658 aa12.94□□□□□ -0.34
RTN3-207ENST00000536011 RAD1O60671 282 aa12.94□□□□□ -0.34
RTN3-207ENST00000536011 CST8O60676 142 aa12.94□□□□□ -0.34
RTN3-207ENST00000536011 CDK14O94921 469 aa12.94□□□□□ -0.34
RTN3-207ENST00000536011 MT-CYBP00156 380 aaPredicted RBP12.94□□□□□ -0.34
RTN3-207ENST00000536011 VIPP01282 170 aa12.94□□□□□ -0.34
RTN3-207ENST00000536011 EPOP01588 193 aa12.94□□□□□ -0.34
RTN3-207ENST00000536011 ANKRD34CP0C6C1 535 aa12.94□□□□□ -0.34
RTN3-207ENST00000536011 ZNF7P17097 686 aaPredicted RBP12.94□□□□□ -0.34
RTN3-207ENST00000536011 BPIP17213 487 aa12.94□□□□□ -0.34
RTN3-207ENST00000536011 XRCC1P18887 633 aaPredicted RBP12.94□□□□□ -0.34
RTN3-207ENST00000536011 PTPN3P26045 913 aa12.94□□□□□ -0.34
RTN3-207ENST00000536011 MAP4P27816 1152 aaKnown RBP12.94□□□□□ -0.34
RTN3-207ENST00000536011 HMGCLP35914 325 aa12.94□□□□□ -0.34
RTN3-207ENST00000536011 UBE2IP63279 158 aaKnown RBP12.94□□□□□ -0.34
RTN3-207ENST00000536011 MC2RQ01718 297 aa12.94□□□□□ -0.34
RTN3-207ENST00000536011 SRSF6Q13247 344 aaKnown RBP12.94□□□□□ -0.34
RTN3-207ENST00000536011 TAZQ16635 292 aa12.94□□□□□ -0.34
RTN3-207ENST00000536011 TFDP3Q5H9I0 405 aa12.94□□□□□ -0.34
RTN3-207ENST00000536011 ANKS6Q68DC2 871 aa12.94□□□□□ -0.34
RTN3-207ENST00000536011 CYB5D1Q6P9G0 228 aa12.94□□□□□ -0.34
RTN3-207ENST00000536011 CRTC3Q6UUV7 619 aa12.94□□□□□ -0.34
RTN3-207ENST00000536011 SPOCD1Q6ZMY3 1216 aa12.94□□□□□ -0.34
RTN3-207ENST00000536011 ARHGAP22Q7Z5H3 698 aa12.94□□□□□ -0.34
RTN3-207ENST00000536011 ADGRG6Q86SQ4 1221 aa12.94□□□□□ -0.34
RTN3-207ENST00000536011 KATNAL2Q8IYT4 538 aa12.94□□□□□ -0.34
RTN3-207ENST00000536011 BMPERQ8N8U9 685 aa12.94□□□□□ -0.34
RTN3-207ENST00000536011 SPATA22Q8NHS9 363 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms