RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 NUCB1Q02818 461 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 RUNX2Q13950 521 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 CAMK1Q14012 370 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 TAF11Q15544 211 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 BAK1Q16611 211 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 NFIL3Q16649 462 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 KIF19Q2TAC6 998 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 HSP90AB3PQ58FF7 597 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 PRAMEF19Q5SWL8 479 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 INTS11Q5TA45 600 aaKnown RBP3.52□□□□□ -1.85
USP48-215ENST00000534705 FAAH2Q6GMR7 532 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 TYW3Q6IPR3 259 aaKnown RBP3.52□□□□□ -1.85
USP48-215ENST00000534705 CFAP161Q6P656 301 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 MOB3CQ70IA8 216 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 H1FNTQ75WM6 255 aaPredicted RBP3.52□□□□□ -1.85
USP48-215ENST00000534705 RRM2BQ7LG56 351 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 SHFQ7M4L6 423 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 PPP1R42Q7Z4L9 355 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 PARP16Q8N5Y8 322 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 PLD5Q8N7P1 536 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 PI4KAP1Q8N8J0 262 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 ARRDC2Q8TBH0 407 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 TTC14Q96N46 770 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 DUX5Q96PT3 197 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 UTP14AQ9BVJ6 771 aaKnown RBP3.52□□□□□ -1.85
USP48-215ENST00000534705 DDX31Q9H8H2 851 aaKnown RBP3.52□□□□□ -1.85
USP48-215ENST00000534705 GRPEL1Q9HAV7 217 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 WASH6PQ9NQA3 447 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 SMYD2Q9NRG4 433 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 SAGE1Q9NXZ1 904 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 RRN3Q9NYV6 651 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 PDP2Q9P2J9 529 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 PCDHGB1Q9Y5G3 927 aa3.52□□□□□ -1.85
USP48-215ENST00000534705 RTL9Q8NET4 1388 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 SIPA1L1O43166 1804 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 MAST2Q6P0Q8 1798 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 SH3TC1Q8TE82 1336 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 CASP8AP2Q9UKL3 1982 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 A0A1B0GVC2 190 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 GLTPD2A6NH11 291 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 RRN3P2A6NIE6 340 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 SRRM3A6NNA2 597 aaPredicted RBP3.51□□□□□ -1.85
USP48-215ENST00000534705 SMTNL1A8MU46 457 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 J3KR12 359 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 K7ENM7 598 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 KLK8O60259 260 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 ATP2C2O75185 946 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 URODP06132 367 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 HOXB5P09067 269 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 POU1F1P28069 291 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 ALDH1B1P30837 517 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 PEX5P50542 639 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 HDAC4P56524 1084 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 CLDN2P57739 230 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 IRX3P78415 501 aaPredicted RBP3.51□□□□□ -1.85
USP48-215ENST00000534705 TOMM20Q15388 145 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 HIST2H2ACQ16777 129 aaPredicted RBP3.51□□□□□ -1.85
USP48-215ENST00000534705 IZUMO4Q1ZYL8 232 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 SOWAHAQ2M3V2 549 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 PRICKLE4Q2TBC4 344 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 BEND3Q5T5X7 828 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 C4orf50Q6ZRC1 276 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 CLEC17AQ6ZS10 378 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 LURAP1LQ8IV03 231 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 ZNF114Q8NC26 417 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 CCDC191Q8NCU4 936 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 TMED6Q8WW62 240 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 FBXL8Q96CD0 374 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 ZC3HAV1LQ96H79 300 aaKnown RBP3.51□□□□□ -1.85
USP48-215ENST00000534705 MXRA8Q9BRK3 442 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 ZNF556Q9HAH1 456 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 C20orf141Q9NUB4 165 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 MPP6Q9NZW5 540 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 TRMT112Q9UI30 125 aaKnown RBP3.51□□□□□ -1.85
USP48-215ENST00000534705 NFE2L3Q9Y4A8 694 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 TTLL3Q9Y4R7 772 aa3.51□□□□□ -1.85
USP48-215ENST00000534705 BAZ2AQ9UIF9 1905 aaKnown RBP3.5□□□□□ -1.85
USP48-215ENST00000534705 ZNF541Q9H0D2 1346 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 MGAMO43451 1857 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 DOCK3Q8IZD9 2030 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 FAM170AA1A519 330 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 DENND3A2RUS2 1198 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 RGS11O94810 467 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 MBD4O95243 580 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 RPN1P04843 607 aaKnown RBP3.5□□□□□ -1.85
USP48-215ENST00000534705 GALTP07902 379 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 HNRNPA1P09651 372 aaKnown RBP eCLIP3.5□□□□□ -1.85
USP48-215ENST00000534705 IRF1P10914 325 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 COX7A2P14406 83 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 AGAP20933 346 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 RXRGP48443 463 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 PDLIM4P50479 330 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 C1QTNF8P60827 252 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 RPL36AP83881 106 aaKnown RBP3.5□□□□□ -1.85
USP48-215ENST00000534705 POU3F1Q03052 451 aaPredicted RBP3.5□□□□□ -1.85
USP48-215ENST00000534705 CCDC173Q0VFZ6 552 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 PRKG2Q13237 762 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 SNTA1Q13424 505 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 GRAPQ13588 217 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 GCKRQ14397 625 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms