RNA–Protein interactions for RNA: ENST00000533244.5

CCS-208, Transcript of copper chaperone for superoxide dismutase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCS, Length 1,430 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCS-208ENST00000533244 ZNF398Q8TD17 642 aa20.2■□□□□ 0.82
CCS-208ENST00000533244 AP1M1Q9BXS5 423 aa20.2■□□□□ 0.82
CCS-208ENST00000533244 CASS4Q9NQ75 786 aa20.2■□□□□ 0.82
CCS-208ENST00000533244 KCND1Q9NSA2 647 aa20.2■□□□□ 0.82
CCS-208ENST00000533244 PIH1D1Q9NWS0 290 aaKnown RBP20.2■□□□□ 0.82
CCS-208ENST00000533244 SMARCAL1Q9NZC9 954 aa20.2■□□□□ 0.82
CCS-208ENST00000533244 RABGEF1Q9UJ41 708 aa20.2■□□□□ 0.82
CCS-208ENST00000533244 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.2■□□□□ 0.82
CCS-208ENST00000533244 FAM149AA5PLN7 773 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 MROH6A6NGR9 719 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 PRR19A6NJB7 356 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 E7EVH7 732 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 CDK14O94921 469 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 PNLIPP16233 465 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 GLB1P16278 677 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 TCP1P17987 556 aaKnown RBP20.19■□□□□ 0.82
CCS-208ENST00000533244 GRIA1P42261 906 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 CLCNKAP51800 687 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 TMEM115Q12893 351 aaPredicted RBP20.19■□□□□ 0.82
CCS-208ENST00000533244 POU6F1Q14863 301 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 LDLRAP1Q5SW96 308 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 GPRC6AQ5T6X5 926 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 GSTA5Q7RTV2 222 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 CCDC74AQ96AQ1 378 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 DNAJC1Q96KC8 554 aaKnown RBP20.19■□□□□ 0.82
CCS-208ENST00000533244 CCDC3Q9BQI4 270 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 NLE1Q9NVX2 485 aaPredicted RBP20.19■□□□□ 0.82
CCS-208ENST00000533244 A6NCN8 305 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 ZNF185O15231 689 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 NUDT21O43809 227 aaKnown RBP20.19■□□□□ 0.82
CCS-208ENST00000533244 MT-CO3P00414 261 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 APRTP07741 180 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 ACP5P13686 325 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 GNG11P61952 73 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 NFATC2Q13469 925 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 PAPD7Q5XG87 772 aaKnown RBP20.19■□□□□ 0.82
CCS-208ENST00000533244 UNQ6494/PRO21346Q6UXR6 183 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 ZNF438Q7Z4V0 828 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 C11orf96Q7Z7L8 435 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 LRRTM4Q86VH4 590 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 STYXQ8WUJ0 223 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 MAGOHBQ96A72 148 aaKnown RBP20.19■□□□□ 0.82
CCS-208ENST00000533244 CNTNAP3BQ96NU0 1288 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 TIMM29Q9BSF4 260 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 CNTNAP3Q9BZ76 1288 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 CLCA2Q9UQC9 943 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 RNF215Q9Y6U7 377 aa20.19■□□□□ 0.82
CCS-208ENST00000533244 IGF2RP11717 2491 aa20.18■□□□□ 0.82
CCS-208ENST00000533244 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP20.18■□□□□ 0.82
CCS-208ENST00000533244 C1QTNF9BB2RNN3 333 aa20.18■□□□□ 0.82
CCS-208ENST00000533244 NTN3O00634 580 aaPredicted RBP20.18■□□□□ 0.82
CCS-208ENST00000533244 KMOO15229 486 aa20.18■□□□□ 0.82
CCS-208ENST00000533244 ECEL1O95672 775 aa20.18■□□□□ 0.82
CCS-208ENST00000533244 EML2O95834 649 aa20.18■□□□□ 0.82
CCS-208ENST00000533244 C1QTNF9P0C862 333 aa20.18■□□□□ 0.82
CCS-208ENST00000533244 JUPP14923 745 aa20.18■□□□□ 0.82
CCS-208ENST00000533244 COILP38432 576 aaPredicted RBP20.18■□□□□ 0.82
CCS-208ENST00000533244 LMAN1P49257 510 aa20.18■□□□□ 0.82
CCS-208ENST00000533244 MAZP56270 477 aaKnown RBP20.18■□□□□ 0.82
CCS-208ENST00000533244 TARDBPQ13148 414 aaKnown RBP eCLIP20.18■□□□□ 0.823e-6■■■■□ 26.3
CCS-208ENST00000533244 NR1D2Q14995 579 aa20.18■□□□□ 0.82
CCS-208ENST00000533244 PPP1R21Q6ZMI0 780 aa20.18■□□□□ 0.82
CCS-208ENST00000533244 ARL14Q8N4G2 192 aa20.18■□□□□ 0.82
CCS-208ENST00000533244 DNAAF3Q8N9W5 541 aa20.18■□□□□ 0.82
CCS-208ENST00000533244 WDR48Q8TAF3 677 aa20.18■□□□□ 0.82
CCS-208ENST00000533244 GDAP1Q8TB36 358 aa20.18■□□□□ 0.82
CCS-208ENST00000533244 PATE1Q8WXA2 126 aa20.18■□□□□ 0.82
CCS-208ENST00000533244 RANBP9Q96S59 729 aa20.18■□□□□ 0.82
CCS-208ENST00000533244 ZCCHC2Q9C0B9 1178 aaKnown RBP20.18■□□□□ 0.82
CCS-208ENST00000533244 ABCG4Q9H172 646 aa20.18■□□□□ 0.82
CCS-208ENST00000533244 ASB8Q9H765 288 aa20.18■□□□□ 0.82
CCS-208ENST00000533244 TBC1D29Q9UFV1 150 aa20.18■□□□□ 0.82
CCS-208ENST00000533244 SLC23A2Q9UGH3 650 aa20.18■□□□□ 0.82
CCS-208ENST00000533244 KCNK6Q9Y257 313 aa20.18■□□□□ 0.82
CCS-208ENST00000533244 NEU2Q9Y3R4 380 aa20.18■□□□□ 0.82
CCS-208ENST00000533244 TRBV5-4A0A0C4DH59 114 aa20.17■□□□□ 0.82
CCS-208ENST00000533244 CASC3O15234 703 aaKnown RBP20.17■□□□□ 0.82
CCS-208ENST00000533244 TCEA3O75764 348 aa20.17■□□□□ 0.82
CCS-208ENST00000533244 CAPNS1P04632 268 aa20.17■□□□□ 0.82
CCS-208ENST00000533244 TMPRSS15P98073 1019 aa20.17■□□□□ 0.82
CCS-208ENST00000533244 SEPT6Q14141 434 aa20.17■□□□□ 0.82
CCS-208ENST00000533244 CRTC3Q6UUV7 619 aa20.17■□□□□ 0.82
CCS-208ENST00000533244 SNX20Q7Z614 316 aa20.17■□□□□ 0.82
CCS-208ENST00000533244 SFRP1Q8N474 314 aa20.17■□□□□ 0.82
CCS-208ENST00000533244 RASGEF1AQ8N9B8 481 aa20.17■□□□□ 0.82
CCS-208ENST00000533244 LRIT1Q9P2V4 623 aa20.17■□□□□ 0.82
CCS-208ENST00000533244 RIMKLBQ9ULI2 386 aa20.17■□□□□ 0.82
CCS-208ENST00000533244 MAP1BP46821 2468 aaKnown RBP20.16■□□□□ 0.82
CCS-208ENST00000533244 CCL22O00626 93 aa20.16■□□□□ 0.82
CCS-208ENST00000533244 FANCGO15287 622 aa20.16■□□□□ 0.82
CCS-208ENST00000533244 PHF2O75151 1096 aa20.16■□□□□ 0.82
CCS-208ENST00000533244 ZNF7P17097 686 aaPredicted RBP20.16■□□□□ 0.82
CCS-208ENST00000533244 TPSB2P20231 275 aa20.16■□□□□ 0.82
CCS-208ENST00000533244 ITGALP20701 1170 aa20.16■□□□□ 0.82
CCS-208ENST00000533244 MC4RP32245 332 aa20.16■□□□□ 0.82
CCS-208ENST00000533244 MAGEA6P43360 314 aa20.16■□□□□ 0.82
CCS-208ENST00000533244 FNTAP49354 379 aa20.16■□□□□ 0.82
CCS-208ENST00000533244 CTSCP53634 463 aa20.16■□□□□ 0.82
CCS-208ENST00000533244 BASP1P80723 227 aaKnown RBP20.16■□□□□ 0.82
CCS-208ENST00000533244 GTF2H3Q13889 308 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms