RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 FZD3Q9NPG1 666 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 ANLNQ9NQW6 1124 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 DNAJC28Q9NX36 388 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 IL1RAPL1Q9NZN1 696 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 COX16Q9P0S2 106 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 IL17BQ9UHF5 180 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 OR51B4Q9Y5P0 310 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 TRPM6Q9BX84 2022 aa8.22□□□□□ -1.09
NEDD8-207ENST00000533242 A0A0G2JND7 137 aa8.22□□□□□ -1.09
NEDD8-207ENST00000533242 NDC80O14777 642 aa8.22□□□□□ -1.09
NEDD8-207ENST00000533242 SLC2A3P11169 496 aa8.22□□□□□ -1.09
NEDD8-207ENST00000533242 EPHB2P29323 1055 aa8.22□□□□□ -1.09
NEDD8-207ENST00000533242 PTPN9P43378 593 aa8.22□□□□□ -1.09
NEDD8-207ENST00000533242 CLN3Q13286 438 aa8.22□□□□□ -1.09
NEDD8-207ENST00000533242 EIF4EBP2Q13542 120 aaPredicted RBP8.22□□□□□ -1.09
NEDD8-207ENST00000533242 PRKD1Q15139 912 aaPredicted RBP8.22□□□□□ -1.09
NEDD8-207ENST00000533242 Q6ZSR6 202 aa8.22□□□□□ -1.09
NEDD8-207ENST00000533242 PRICKLE2Q7Z3G6 844 aa8.22□□□□□ -1.09
NEDD8-207ENST00000533242 CLNKQ7Z7G1 428 aa8.22□□□□□ -1.09
NEDD8-207ENST00000533242 SLC26A11Q86WA9 606 aa8.22□□□□□ -1.09
NEDD8-207ENST00000533242 DEFB106AQ8N104 65 aa8.22□□□□□ -1.09
NEDD8-207ENST00000533242 ZNF548Q8NEK5 533 aaPredicted RBP8.22□□□□□ -1.09
NEDD8-207ENST00000533242 WDR36Q8NI36 951 aaKnown RBP8.22□□□□□ -1.09
NEDD8-207ENST00000533242 WDR48Q8TAF3 677 aa8.22□□□□□ -1.09
NEDD8-207ENST00000533242 STK32AQ8WU08 396 aa8.22□□□□□ -1.09
NEDD8-207ENST00000533242 PLCD4Q9BRC7 762 aa8.22□□□□□ -1.09
NEDD8-207ENST00000533242 HDAC8Q9BY41 377 aa8.22□□□□□ -1.09
NEDD8-207ENST00000533242 VPS11Q9H270 941 aa8.22□□□□□ -1.09
NEDD8-207ENST00000533242 LRMDAQ9H2I8 198 aa8.22□□□□□ -1.09
NEDD8-207ENST00000533242 DYRK4Q9NR20 520 aa8.22□□□□□ -1.09
NEDD8-207ENST00000533242 NKX1-2Q9UD57 310 aaPredicted RBP8.22□□□□□ -1.09
NEDD8-207ENST00000533242 ZFR2Q9UPR6 939 aaKnown RBP8.22□□□□□ -1.09
NEDD8-207ENST00000533242 MAD1L1Q9Y6D9 718 aa8.22□□□□□ -1.09
NEDD8-207ENST00000533242 KIF26BQ2KJY2 2108 aa8.22□□□□□ -1.09
NEDD8-207ENST00000533242 SCN8AQ9UQD0 1980 aa8.22□□□□□ -1.09
NEDD8-207ENST00000533242 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.21□□□□□ -1.09
NEDD8-207ENST00000533242 CPED1A4D0V7 1026 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 FAM72CH0Y354 149 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 SMAPO00193 183 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 CSF2P04141 144 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 PRNPP04156 253 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 CTSLP07711 333 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 NME1P15531 152 aaKnown RBP8.21□□□□□ -1.09
NEDD8-207ENST00000533242 TSHRP16473 764 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 SKIV2L2P42285 1042 aaKnown RBP8.21□□□□□ -1.09
NEDD8-207ENST00000533242 SERPINB4P48594 390 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 CLDN2P57739 230 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 CBLBQ13191 982 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 MTA1Q13330 715 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 ZNF177Q13360 481 aaPredicted RBP8.21□□□□□ -1.09
NEDD8-207ENST00000533242 FZD2Q14332 565 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 NR0B2Q15466 257 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 CDKN3Q16667 212 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 ARL13BQ3SXY8 428 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 TMEM259Q4ZIN3 620 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 FAM72AQ5TYM5 149 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 FAM72DQ6L9T8 149 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 FBXL22Q6P050 247 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 ERN2Q76MJ5 926 aaKnown RBP8.21□□□□□ -1.09
NEDD8-207ENST00000533242 PTAR1Q7Z6K3 402 aaPredicted RBP8.21□□□□□ -1.09
NEDD8-207ENST00000533242 FAM72BQ86X60 149 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 ARL14Q8N4G2 192 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 BMFQ96LC9 184 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 OLFM3Q96PB7 478 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 QKIQ96PU8 341 aaKnown RBP eCLIP8.21□□□□□ -1.09
NEDD8-207ENST00000533242 CCNL2Q96S94 520 aaPredicted RBP8.21□□□□□ -1.09
NEDD8-207ENST00000533242 TSSK1BQ9BXA7 367 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 TBC1D10AQ9BXI6 508 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 SLC13A1Q9BZW2 595 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 KLC2Q9H0B6 622 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 CAAP1Q9H8G2 361 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 MCM8Q9UJA3 840 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 ATXN7L1Q9ULK2 861 aaPredicted RBP8.21□□□□□ -1.09
NEDD8-207ENST00000533242 HS3ST2Q9Y278 367 aa8.21□□□□□ -1.09
NEDD8-207ENST00000533242 CCDC187A0A096LP49 1063 aa8.21□□□□□ -1.1
NEDD8-207ENST00000533242 IQANK1A0A1B0GTG1 560 aa8.21□□□□□ -1.1
NEDD8-207ENST00000533242 FAM237BA0A1B0GVD1 139 aa8.21□□□□□ -1.1
NEDD8-207ENST00000533242 EME2A4GXA9 379 aaPredicted RBP8.21□□□□□ -1.1
NEDD8-207ENST00000533242 KPNA3O00505 521 aaPredicted RBP8.21□□□□□ -1.1
NEDD8-207ENST00000533242 TERTO14746 1132 aaKnown RBP8.21□□□□□ -1.1
NEDD8-207ENST00000533242 TPP1O14773 563 aa8.21□□□□□ -1.1
NEDD8-207ENST00000533242 KALRNO60229 2985 aa8.21□□□□□ -1.1
NEDD8-207ENST00000533242 GCATO75600 419 aa8.21□□□□□ -1.1
NEDD8-207ENST00000533242 PCDH8O95206 1070 aa8.21□□□□□ -1.1
NEDD8-207ENST00000533242 SRCP12931 536 aa8.21□□□□□ -1.1
NEDD8-207ENST00000533242 SERPINB3P29508 390 aa8.21□□□□□ -1.1
NEDD8-207ENST00000533242 NUMBP49757 651 aa8.21□□□□□ -1.1
NEDD8-207ENST00000533242 SRSF1Q07955 248 aaKnown RBP eCLIP8.21□□□□□ -1.1
NEDD8-207ENST00000533242 NFATC3Q12968 1075 aa8.21□□□□□ -1.1
NEDD8-207ENST00000533242 SETDB1Q15047 1291 aa8.21□□□□□ -1.1
NEDD8-207ENST00000533242 C5orf22Q49AR2 442 aa8.21□□□□□ -1.1
NEDD8-207ENST00000533242 ZNF542PQ5EBM4 170 aa8.21□□□□□ -1.1
NEDD8-207ENST00000533242 MROH9Q5TGP6 573 aa8.21□□□□□ -1.1
NEDD8-207ENST00000533242 KIAA1161Q6NSJ0 714 aa8.21□□□□□ -1.1
NEDD8-207ENST00000533242 GUSBP11Q6P575 273 aa8.21□□□□□ -1.1
NEDD8-207ENST00000533242 ATG14Q6ZNE5 492 aa8.21□□□□□ -1.1
NEDD8-207ENST00000533242 EXD3Q8N9H8 876 aa8.21□□□□□ -1.1
NEDD8-207ENST00000533242 FAM13CQ8NE31 585 aa8.21□□□□□ -1.1
NEDD8-207ENST00000533242 ARMC2Q8NEN0 867 aa8.21□□□□□ -1.1
NEDD8-207ENST00000533242 RPRD1AQ96P16 312 aaPredicted RBP8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms