RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 ZNF711Q9Y462 761 aa14.56□□□□□ -0.08
VPS28-215ENST00000531924 PCYT1BQ9Y5K3 369 aaPredicted RBP14.56□□□□□ -0.08
VPS28-215ENST00000531924 ARHGEF17Q96PE2 2063 aaPredicted RBP14.56□□□□□ -0.08
VPS28-215ENST00000531924 A0A0A6YYK5 440 aaPredicted RBP14.55□□□□□ -0.08
VPS28-215ENST00000531924 PDZK1P1A8MUH7 402 aa14.55□□□□□ -0.08
VPS28-215ENST00000531924 KMOO15229 486 aa14.55□□□□□ -0.08
VPS28-215ENST00000531924 CAPN5O15484 640 aaPredicted RBP14.55□□□□□ -0.08
VPS28-215ENST00000531924 PMPCBO75439 489 aa14.55□□□□□ -0.08
VPS28-215ENST00000531924 VIPP01282 170 aa14.55□□□□□ -0.08
VPS28-215ENST00000531924 LIFP15018 202 aa14.55□□□□□ -0.08
VPS28-215ENST00000531924 AMD1P17707 334 aa14.55□□□□□ -0.08
VPS28-215ENST00000531924 VCLP18206 1134 aa14.55□□□□□ -0.08
VPS28-215ENST00000531924 WT1P19544 449 aaPredicted RBP14.55□□□□□ -0.08
VPS28-215ENST00000531924 DCDC1P59894 354 aa14.55□□□□□ -0.08
VPS28-215ENST00000531924 MC2RQ01718 297 aa14.55□□□□□ -0.08
VPS28-215ENST00000531924 GTF2H3Q13889 308 aa14.55□□□□□ -0.08
VPS28-215ENST00000531924 TFDP2Q14188 446 aa14.55□□□□□ -0.08
VPS28-215ENST00000531924 PLA2G4EQ3MJ16 856 aa14.55□□□□□ -0.08
VPS28-215ENST00000531924 ZNF648Q5T619 568 aaPredicted RBP14.55□□□□□ -0.08
VPS28-215ENST00000531924 BORAQ6PGQ7 559 aa14.55□□□□□ -0.08
VPS28-215ENST00000531924 NPNTQ6UXI9 565 aa14.55□□□□□ -0.08
VPS28-215ENST00000531924 LRRTM4Q86VH4 590 aa14.55□□□□□ -0.08
VPS28-215ENST00000531924 GPR26Q8NDV2 337 aa14.55□□□□□ -0.08
VPS28-215ENST00000531924 GDAP1Q8TB36 358 aa14.55□□□□□ -0.08
VPS28-215ENST00000531924 GLYATL1Q969I3 302 aa14.55□□□□□ -0.08
VPS28-215ENST00000531924 TTC25Q96NG3 672 aa14.55□□□□□ -0.08
VPS28-215ENST00000531924 CTRCQ99895 268 aa14.55□□□□□ -0.08
VPS28-215ENST00000531924 EFHD1Q9BUP0 239 aa14.55□□□□□ -0.08
VPS28-215ENST00000531924 CLMPQ9H6B4 373 aa14.55□□□□□ -0.08
VPS28-215ENST00000531924 GPN2Q9H9Y4 310 aaPredicted RBP14.55□□□□□ -0.08
VPS28-215ENST00000531924 GLOD4Q9HC38 313 aa14.55□□□□□ -0.08
VPS28-215ENST00000531924 ABHD10Q9NUJ1 306 aa14.55□□□□□ -0.08
VPS28-215ENST00000531924 DNAJC16Q9Y2G8 782 aa14.55□□□□□ -0.08
VPS28-215ENST00000531924 ZNF891A8MT65 544 aaPredicted RBP14.54□□□□□ -0.08
VPS28-215ENST00000531924 PYCARD-AS1I3L0S3 204 aa14.54□□□□□ -0.08
VPS28-215ENST00000531924 POLR1CO15160 346 aaPredicted RBP14.54□□□□□ -0.08
VPS28-215ENST00000531924 PPFIA2O75334 1257 aa14.54□□□□□ -0.08
VPS28-215ENST00000531924 NDST3O95803 873 aa14.54□□□□□ -0.08
VPS28-215ENST00000531924 MAP4P27816 1152 aaKnown RBP14.54□□□□□ -0.08
VPS28-215ENST00000531924 NR2C2P49116 596 aa14.54□□□□□ -0.08
VPS28-215ENST00000531924 SEPT7Q16181 437 aaKnown RBP14.54□□□□□ -0.08
VPS28-215ENST00000531924 SKOR2Q2VWA4 1001 aaPredicted RBP14.54□□□□□ -0.08
VPS28-215ENST00000531924 ATG14Q6ZNE5 492 aa14.54□□□□□ -0.08
VPS28-215ENST00000531924 B4GALNT4Q76KP1 1039 aa14.54□□□□□ -0.08
VPS28-215ENST00000531924 ARHGAP22Q7Z5H3 698 aa14.54□□□□□ -0.08
VPS28-215ENST00000531924 TMC3Q7Z5M5 1100 aa14.54□□□□□ -0.08
VPS28-215ENST00000531924 ADGRG6Q86SQ4 1221 aa14.54□□□□□ -0.08
VPS28-215ENST00000531924 NLGN4XQ8N0W4 816 aa14.54□□□□□ -0.08
VPS28-215ENST00000531924 NLGN4YQ8NFZ3 816 aaPredicted RBP14.54□□□□□ -0.08
VPS28-215ENST00000531924 SPATA22Q8NHS9 363 aa14.54□□□□□ -0.08
VPS28-215ENST00000531924 TFB1MQ8WVM0 346 aaKnown RBP14.54□□□□□ -0.08
VPS28-215ENST00000531924 OLFM3Q96PB7 478 aa14.54□□□□□ -0.08
VPS28-215ENST00000531924 TRIB3Q96RU7 358 aa14.54□□□□□ -0.08
VPS28-215ENST00000531924 CHP1Q99653 195 aa14.54□□□□□ -0.08
VPS28-215ENST00000531924 TBC1D10AQ9BXI6 508 aa14.54□□□□□ -0.08
VPS28-215ENST00000531924 FBXO8Q9NRD0 319 aa14.54□□□□□ -0.08
VPS28-215ENST00000531924 FLNBO75369 2602 aaKnown RBP14.54□□□□□ -0.08
VPS28-215ENST00000531924 COL6A6A6NMZ7 2263 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 A6NCN8 305 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 C3orf70A6NLC5 250 aaPredicted RBP14.53□□□□□ -0.08
VPS28-215ENST00000531924 VEGFDO43915 354 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 CDK14O94921 469 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 MT-CYBP00156 380 aaPredicted RBP14.53□□□□□ -0.08
VPS28-215ENST00000531924 ZNF7P17097 686 aaPredicted RBP14.53□□□□□ -0.08
VPS28-215ENST00000531924 TYRP1P17643 537 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 CCR10P46092 362 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 ARSDP51689 593 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 CLCNKAP51800 687 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 FOXM1Q08050 763 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 SLC14A2Q15849 920 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 TEX44Q53QW1 395 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 FAM182AQ5T1J6 154 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 KAZNQ674X7 775 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 VSTM4Q8IW00 320 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 BMPERQ8N8U9 685 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 HTR3CQ8WXA8 447 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 EID2BQ96D98 161 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 RTP4Q96DX8 246 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 CATSPER2Q96P56 530 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 PLEKHG4BQ96PX9 1271 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 SLC12A9Q9BXP2 914 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 TRIT1Q9H3H1 467 aaKnown RBP14.53□□□□□ -0.08
VPS28-215ENST00000531924 BPIFA1Q9NP55 256 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 STARD5Q9NSY2 213 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 UBP1Q9NZI7 540 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 NFKBIL1Q9UBC1 381 aaPredicted RBP14.53□□□□□ -0.08
VPS28-215ENST00000531924 HYOU1Q9Y4L1 999 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 TENM4Q6N022 2769 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 SETXQ7Z333 2677 aaKnown RBP14.53□□□□□ -0.08
VPS28-215ENST00000531924 SCN8AQ9UQD0 1980 aa14.53□□□□□ -0.08
VPS28-215ENST00000531924 LILRA5A6NI73 299 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 MTSS1O43312 755 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 CST8O60676 142 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 MFAP3LO75121 409 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 MTX2O75431 263 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 RASSF9O75901 435 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 STK17BO94768 372 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 UBXN7O94888 489 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 WISP1O95388 367 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 BPIP17213 487 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms