RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 FADS3Q9Y5Q0 445 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 RPS6KL1Q9Y6S9 549 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 FANCMQ8IYD8 2048 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 EP300Q09472 2414 aaPredicted RBP7.37□□□□□ -1.23
CD44-228ENST00000528455 CCDC163A0A0D9SF12 145 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 ZCWPW2A0A1B0GU75 182 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 STX7O15400 261 aaKnown RBP7.37□□□□□ -1.23
CD44-228ENST00000528455 RIPK2O43353 540 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 ATP8B1O43520 1251 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 ZNF217O75362 1048 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 TCEA3O75764 348 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 TIAF1O95411 115 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 CLDN7O95471 211 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 PROCP04070 461 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 ABHD2P08910 425 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 ALPIP09923 528 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 GLB1P16278 677 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 CTPS1P17812 591 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 GABRG2P18507 467 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 NMBRP28336 390 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 SSTR1P30872 391 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 VIPR1P32241 457 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 GPX6P59796 221 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 CRADDP78560 199 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 CNTN1Q12860 1018 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 ILF2Q12905 390 aaKnown RBP7.37□□□□□ -1.23
CD44-228ENST00000528455 STAT4Q14765 748 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 FASTKD3Q14CZ7 662 aaKnown RBP7.37□□□□□ -1.23
CD44-228ENST00000528455 CNGA3Q16281 694 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 TTC31Q49AM3 519 aaPredicted RBP7.37□□□□□ -1.23
CD44-228ENST00000528455 PIP5KL1Q5T9C9 394 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 ALS2CLQ60I27 953 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 DENND2CQ68D51 928 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 ANKRD34AQ69YU3 496 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 ESRP1Q6NXG1 681 aaKnown RBP7.37□□□□□ -1.23
CD44-228ENST00000528455 TSSK4Q6SA08 328 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 LIPIQ6XZB0 460 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 UNC5AQ6ZN44 842 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 PARS2Q7L3T8 475 aaKnown RBP7.37□□□□□ -1.23
CD44-228ENST00000528455 ERMP1Q7Z2K6 904 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 HDXQ7Z353 690 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 GLT6D1Q7Z4J2 308 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 TECPR1Q7Z6L1 1165 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 RASSF3Q86WH2 238 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 AADATQ8N5Z0 425 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 ZBTB44Q8NCP5 570 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 PHC3Q8NDX5 983 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 OR4K2Q8NGD2 314 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 GSDMBQ8TAX9 411 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 ASB12Q8WXK4 309 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 ANKRD7Q92527 254 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 NELL1Q92832 810 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 EID2BQ96D98 161 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 C9orf72Q96LT7 481 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 FCRL3Q96P31 734 aaPredicted RBP7.37□□□□□ -1.23
CD44-228ENST00000528455 ROPN1BQ9BZX4 212 aaPredicted RBP7.37□□□□□ -1.23
CD44-228ENST00000528455 CDC42EP4Q9H3Q1 356 aaKnown RBP7.37□□□□□ -1.23
CD44-228ENST00000528455 PPCSQ9HAB8 311 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 ROPN1Q9HAT0 212 aaPredicted RBP7.37□□□□□ -1.23
CD44-228ENST00000528455 SGK2Q9HBY8 427 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 CYP4F12Q9HCS2 524 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 PCDH12Q9NPG4 1184 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 NINJ2Q9NZG7 142 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 FETUBQ9UGM5 382 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 APPL1Q9UKG1 709 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 PKP3Q9Y446 797 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 ZNF711Q9Y462 761 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 SPO11Q9Y5K1 396 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 TRPM6Q9BX84 2022 aa7.37□□□□□ -1.23
CD44-228ENST00000528455 LRRK1Q38SD2 2015 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 A0A087WUV0 522 aaPredicted RBP7.36□□□□□ -1.23
CD44-228ENST00000528455 C1orf232A0A0U1RR37 186 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 TCRBV21S2A2A0A5A6 115 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 NPIPB15A6NHN6 443 aaPredicted RBP7.36□□□□□ -1.23
CD44-228ENST00000528455 AGAP14A8MT82 685 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 AURKAO14965 403 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 PLRG1O43660 514 aaKnown RBP7.36□□□□□ -1.23
CD44-228ENST00000528455 RNASEH2AO75792 299 aaKnown RBP7.36□□□□□ -1.23
CD44-228ENST00000528455 APBB3O95704 486 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 NUDT17P0C025 328 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 PIRTP0C851 137 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 DRD2P14416 443 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 HSD17B3P37058 310 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 PPARGP37231 505 aaPredicted RBP7.36□□□□□ -1.23
CD44-228ENST00000528455 MMP12P39900 470 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 ARCN1P48444 511 aaKnown RBP7.36□□□□□ -1.23
CD44-228ENST00000528455 PSMD8P48556 350 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 SPINT3P49223 89 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 TPMTP51580 245 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 STC1P52823 247 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 EIF3BP55884 814 aaKnown RBP7.36□□□□□ -1.23
CD44-228ENST00000528455 TAS2R38P59533 333 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 RPS21P63220 83 aaKnown RBP7.36□□□□□ -1.23
CD44-228ENST00000528455 DPTQ07507 201 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 PTPRRQ15256 657 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 LONRF1Q17RB8 773 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 AGBL4Q5VU57 503 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 PDPK2PQ6A1A2 396 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 KIAA0930Q6ICG6 404 aaPredicted RBP7.36□□□□□ -1.23
CD44-228ENST00000528455 Q6ZS52 159 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms