RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 SLC23A2Q9UGH3 650 aa23.25■■□□□ 1.31
CPSF1-202ENST00000527827 KCNMB2Q9Y691 235 aa23.25■■□□□ 1.31
CPSF1-202ENST00000527827 BZW2Q9Y6E2 419 aaKnown RBP23.25■■□□□ 1.31
CPSF1-202ENST00000527827 SLC30A1Q9Y6M5 507 aa23.25■■□□□ 1.31
CPSF1-202ENST00000527827 USP9YO00507 2555 aaPredicted RBP23.24■■□□□ 1.31
CPSF1-202ENST00000527827 A0A087X0T9 212 aa23.24■■□□□ 1.31
CPSF1-202ENST00000527827 PRR19A6NJB7 356 aa23.24■■□□□ 1.31
CPSF1-202ENST00000527827 FAM228BP0C875 321 aa23.24■■□□□ 1.31
CPSF1-202ENST00000527827 SLC19A1P41440 591 aa23.24■■□□□ 1.31
CPSF1-202ENST00000527827 GPR26Q8NDV2 337 aa23.24■■□□□ 1.31
CPSF1-202ENST00000527827 HDAC11Q96DB2 347 aa23.24■■□□□ 1.31
CPSF1-202ENST00000527827 SPATA16Q9BXB7 569 aa23.24■■□□□ 1.31
CPSF1-202ENST00000527827 OSGEPL1Q9H4B0 414 aa23.24■■□□□ 1.31
CPSF1-202ENST00000527827 TRIM39Q9HCM9 518 aa23.24■■□□□ 1.31
CPSF1-202ENST00000527827 ZNF624Q9P2J8 865 aaPredicted RBP23.24■■□□□ 1.31
CPSF1-202ENST00000527827 PLAAQ9Y263 795 aa23.24■■□□□ 1.31
CPSF1-202ENST00000527827 TP53TG5Q9Y2B4 290 aa23.24■■□□□ 1.31
CPSF1-202ENST00000527827 KCTD3Q9Y597 815 aa23.24■■□□□ 1.31
CPSF1-202ENST00000527827 CHUKO15111 745 aa23.23■■□□□ 1.31
CPSF1-202ENST00000527827 UBXN7O94888 489 aa23.23■■□□□ 1.31
CPSF1-202ENST00000527827 JCHAINP01591 159 aa23.23■■□□□ 1.31
CPSF1-202ENST00000527827 TYRP1P17643 537 aa23.23■■□□□ 1.31
CPSF1-202ENST00000527827 DLSTP36957 453 aa23.23■■□□□ 1.31
CPSF1-202ENST00000527827 TAS2R40P59535 323 aa23.23■■□□□ 1.31
CPSF1-202ENST00000527827 SH3BP2P78314 561 aa23.23■■□□□ 1.31
CPSF1-202ENST00000527827 SEPT6Q14141 434 aa23.23■■□□□ 1.31
CPSF1-202ENST00000527827 GALNT3Q14435 633 aa23.23■■□□□ 1.31
CPSF1-202ENST00000527827 PDK2Q15119 407 aa23.23■■□□□ 1.31
CPSF1-202ENST00000527827 ZNF569Q5MCW4 686 aa23.23■■□□□ 1.31
CPSF1-202ENST00000527827 CRTC3Q6UUV7 619 aa23.23■■□□□ 1.31
CPSF1-202ENST00000527827 C6orf15Q6UXA7 325 aaPredicted RBP23.23■■□□□ 1.31
CPSF1-202ENST00000527827 ADGRG6Q86SQ4 1221 aa23.23■■□□□ 1.31
CPSF1-202ENST00000527827 CCDC13Q8IYE1 715 aa23.23■■□□□ 1.31
CPSF1-202ENST00000527827 CNTD1Q8N815 330 aa23.23■■□□□ 1.31
CPSF1-202ENST00000527827 SYN2Q92777 582 aaPredicted RBP23.23■■□□□ 1.31
CPSF1-202ENST00000527827 TGM7Q96PF1 710 aa23.23■■□□□ 1.31
CPSF1-202ENST00000527827 TMEM63CQ9P1W3 806 aa23.23■■□□□ 1.31
CPSF1-202ENST00000527827 CROTQ9UKG9 612 aa23.23■■□□□ 1.31
CPSF1-202ENST00000527827 USP9XQ93008 2570 aaPredicted RBP23.22■■□□□ 1.31
CPSF1-202ENST00000527827 K7EM74 188 aa23.22■■□□□ 1.31
CPSF1-202ENST00000527827 KCNK1O00180 336 aa23.22■■□□□ 1.31
CPSF1-202ENST00000527827 SLC25A14O95258 325 aaPredicted RBP23.22■■□□□ 1.31
CPSF1-202ENST00000527827 VIPP01282 170 aa23.22■■□□□ 1.31
CPSF1-202ENST00000527827 FURINP09958 794 aa23.22■■□□□ 1.31
CPSF1-202ENST00000527827 NR1D1P20393 614 aa23.22■■□□□ 1.31
CPSF1-202ENST00000527827 MX2P20592 715 aa23.22■■□□□ 1.31
CPSF1-202ENST00000527827 NOP2P46087 812 aaKnown RBP23.22■■□□□ 1.31
CPSF1-202ENST00000527827 LEPRP48357 1165 aaKnown RBP23.22■■□□□ 1.31
CPSF1-202ENST00000527827 SEPHS1P49903 392 aa23.22■■□□□ 1.31
CPSF1-202ENST00000527827 PLA2G4EQ3MJ16 856 aa23.22■■□□□ 1.31
CPSF1-202ENST00000527827 FAM182AQ5T1J6 154 aa23.22■■□□□ 1.31
CPSF1-202ENST00000527827 ALS2CLQ60I27 953 aa23.22■■□□□ 1.31
CPSF1-202ENST00000527827 GALNT6Q8NCL4 622 aa23.22■■□□□ 1.31
CPSF1-202ENST00000527827 TRIB3Q96RU7 358 aa23.22■■□□□ 1.31
CPSF1-202ENST00000527827 ADGRE3Q9BY15 652 aa23.22■■□□□ 1.31
CPSF1-202ENST00000527827 ZNF768Q9H5H4 540 aaKnown RBP23.22■■□□□ 1.31
CPSF1-202ENST00000527827 ZFYVE1Q9HBF4 777 aa23.22■■□□□ 1.31
CPSF1-202ENST00000527827 SPENQ96T58 3664 aaKnown RBP23.21■■□□□ 1.31
CPSF1-202ENST00000527827 A0A1W2PQJ5 194 aa23.21■■□□□ 1.31
CPSF1-202ENST00000527827 GPR89AB7ZAQ6 455 aa23.21■■□□□ 1.31
CPSF1-202ENST00000527827 TOX3O15405 576 aaPredicted RBP23.21■■□□□ 1.31
CPSF1-202ENST00000527827 MBD3O95983 291 aa23.21■■□□□ 1.31
CPSF1-202ENST00000527827 SERPING1P05155 500 aa23.21■■□□□ 1.31
CPSF1-202ENST00000527827 GPR89BP0CG08 455 aa23.21■■□□□ 1.31
CPSF1-202ENST00000527827 GP1BBP13224 206 aa23.21■■□□□ 1.31
CPSF1-202ENST00000527827 DCDC1P59894 354 aa23.21■■□□□ 1.31
CPSF1-202ENST00000527827 KLRB1Q12918 225 aa23.21■■□□□ 1.31
CPSF1-202ENST00000527827 ZBTB17Q13105 803 aa23.21■■□□□ 1.31
CPSF1-202ENST00000527827 CCNYQ8ND76 341 aa23.21■■□□□ 1.31
CPSF1-202ENST00000527827 GLYATL1Q969I3 302 aa23.21■■□□□ 1.31
CPSF1-202ENST00000527827 MIB2Q96AX9 1013 aa23.21■■□□□ 1.31
CPSF1-202ENST00000527827 OR6C1Q96RD1 312 aa23.21■■□□□ 1.31
CPSF1-202ENST00000527827 ZSCAN5AQ9BUG6 496 aa23.21■■□□□ 1.31
CPSF1-202ENST00000527827 NFKBIL1Q9UBC1 381 aaPredicted RBP23.21■■□□□ 1.31
CPSF1-202ENST00000527827 MAN2B2Q9Y2E5 1009 aa23.21■■□□□ 1.31
CPSF1-202ENST00000527827 PCDHB3Q9Y5E6 796 aa23.21■■□□□ 1.31
CPSF1-202ENST00000527827 KIF1CO43896 1103 aaKnown RBP23.2■■□□□ 1.3
CPSF1-202ENST00000527827 MTA2O94776 668 aa23.2■■□□□ 1.3
CPSF1-202ENST00000527827 KIAA0754O94854 1291 aa23.2■■□□□ 1.3
CPSF1-202ENST00000527827 PROSCO94903 275 aa23.2■■□□□ 1.3
CPSF1-202ENST00000527827 PIRTP0C851 137 aa23.2■■□□□ 1.3
CPSF1-202ENST00000527827 BRAFP15056 766 aa23.2■■□□□ 1.3
CPSF1-202ENST00000527827 ZNF7P17097 686 aaPredicted RBP23.2■■□□□ 1.3
CPSF1-202ENST00000527827 AMD1P17707 334 aa23.2■■□□□ 1.3
CPSF1-202ENST00000527827 ERV3-1Q14264 604 aa23.2■■□□□ 1.3
CPSF1-202ENST00000527827 IL11RAQ14626 422 aa23.2■■□□□ 1.3
CPSF1-202ENST00000527827 INSCQ1MX18 579 aa23.2■■□□□ 1.3
CPSF1-202ENST00000527827 ALKBH5Q6P6C2 394 aaKnown RBP23.2■■□□□ 1.3
CPSF1-202ENST00000527827 TMC3Q7Z5M5 1100 aa23.2■■□□□ 1.3
CPSF1-202ENST00000527827 MAP7D3Q8IWC1 876 aa23.2■■□□□ 1.3
CPSF1-202ENST00000527827 TRIM48Q8IWZ4 208 aa23.2■■□□□ 1.3
CPSF1-202ENST00000527827 TRAM1L1Q8N609 369 aa23.2■■□□□ 1.3
CPSF1-202ENST00000527827 RSC1A1Q92681 617 aa23.2■■□□□ 1.3
CPSF1-202ENST00000527827 BRD8Q9H0E9 1235 aa23.2■■□□□ 1.3
CPSF1-202ENST00000527827 NENFQ9UMX5 172 aa23.2■■□□□ 1.3
CPSF1-202ENST00000527827 SHOC2Q9UQ13 582 aa23.2■■□□□ 1.3
CPSF1-202ENST00000527827 DNAJC16Q9Y2G8 782 aa23.2■■□□□ 1.3
CPSF1-202ENST00000527827 GOLGA6L3A6NEY3 463 aa23.19■■□□□ 1.3
CPSF1-202ENST00000527827 KMOO15229 486 aa23.19■■□□□ 1.3
CPSF1-202ENST00000527827 NDUFA10O95299 355 aa23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms