RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 CENPIQ92674 756 aaPredicted RBP8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 MED8Q96G25 268 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 FBXL20Q96IG2 436 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 NODALQ96S42 347 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 ABCG8Q9H221 673 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 ARMC7Q9H6L4 198 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 IPPKQ9H8X2 491 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 PTBP2Q9UKA9 531 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 C9IYK1 514 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 PRMT5O14744 637 aaPredicted RBP8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 BCKDKO14874 412 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 UGT1A6P19224 532 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 OGNP20774 298 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 UGT1A1P22309 533 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 UGT1A4P22310 534 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 UGT1A3P35503 534 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 UGT1A5P35504 534 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 GJA9P57773 515 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 ZC3H12BQ5HYM0 836 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 USP50Q70EL3 339 aaPredicted RBP8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 PAGE2Q7Z2X7 111 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 ITCHQ96J02 903 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 PRICKLE1Q96MT3 831 aaPredicted RBP8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 LRRC3Q9BY71 257 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 TUBA8Q9NY65 449 aaPredicted RBP8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 ITGB1BP2Q9UKP3 347 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 FAM234BA2RU67 622 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 GRID2O43424 1007 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 NOBOXO60393 691 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 RAP2AP10114 183 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 GRK4P32298 578 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 ENTPD1P49961 510 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 IRF8Q02556 426 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 IL10RBQ08334 325 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 MRPL28Q13084 256 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 CCDC142Q17RM4 750 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 RABL3Q5HYI8 236 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 FAM151BQ6UXP7 276 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 HIPK1Q86Z02 1210 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 CPNE9Q8IYJ1 553 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 SIDT2Q8NBJ9 832 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 FEM1CQ96JP0 617 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 TSSK3Q96PN8 268 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 SLC2A13Q96QE2 648 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 CRTAC1Q9NQ79 661 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 KLHL3Q9UH77 587 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 TEKT2Q9UIF3 430 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 MOSPD1Q9UJG1 213 aa8.35□□□□□ -1.07
LIMCH1-216ENST00000512820 CLDN25C9JDP6 229 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 IFRD1O00458 451 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 ANGPTL1O95841 491 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 PENKP01210 267 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 TYMPP19971 482 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 ERVK-8P63133 956 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 ZNF33AQ06730 810 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 DAG1Q14118 895 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 FAM117BQ6P1L5 589 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 ADCK2Q7Z695 626 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 ANKRD23Q86SG2 305 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 TRIM74Q86UV6 250 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 TRIM73Q86UV7 250 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 C11orf74Q86VG3 221 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 PCSK9Q8NBP7 692 aaKnown RBP8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 HPS1Q92902 700 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 PANX1Q96RD7 426 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 NUAK2Q9H093 628 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 TRIM45Q9H8W5 580 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 LRTM1Q9HBL6 345 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 IKZF3Q9UKT9 509 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 ZNF490Q9ULM2 529 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 A0A1W2PPW3 197 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 BTBD19C9JJ37 291 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 H3BNH8 94 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 J3KR12 359 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 MFN2O95140 757 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 FADS2O95864 444 aaKnown RBP8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 CES1P23141 567 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 IGFBP5P24593 272 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 HSPA7P48741 367 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 SIRPB2Q5JXA9 342 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 ZNF678Q5SXM1 525 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 HECTD3Q5T447 861 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 XKR5Q6UX68 686 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 ZNF534Q76KX8 674 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 DDX53Q86TM3 631 aaKnown RBP8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 CILP2Q8IUL8 1156 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 OR7D4Q8NG98 312 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 ZUFSPQ96AP4 578 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 OTUB1Q96FW1 271 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 PLEKHA8Q96JA3 519 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 GPATCH1Q9BRR8 931 aaKnown RBP8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 CCNB1IP1Q9NPC3 277 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 KRT84Q9NSB2 600 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 KCTD3Q9Y597 815 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 RAI2Q9Y5P3 530 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 RREB1Q92766 1687 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 ALOX5P09917 674 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 FAM163BP0C2L3 166 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 PBLDP30039 288 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 RXRGP48443 463 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms