RNA–Protein interactions for RNA: ENST00000494464.5

ERCC3-209, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, humanhuman

TSL 1 (best)

Gene ERCC3, Length 1,367 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3-209ENST00000494464 NR1D2Q14995 579 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 PYCR3Q53H96 274 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 AADACL2Q6P093 401 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 SLC30A9Q6PML9 568 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 SPRED1Q7Z699 444 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 SFTPA2Q8IWL1 248 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 ACTL9Q8TC94 416 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 ZDHHC1Q8WTX9 485 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 FGF11Q92914 225 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 SLCO2A1Q92959 643 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 ATXN7L3BQ96GX2 97 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 LIN37Q96GY3 246 aaPredicted RBP13.07□□□□□ -0.32
ERCC3-209ENST00000494464 GFM1Q96RP9 751 aaKnown RBP13.07□□□□□ -0.32
ERCC3-209ENST00000494464 FERMT1Q9BQL6 677 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 HERPUD2Q9BSE4 406 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 HEMGNQ9BXL5 484 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 GPR63Q9BZJ6 419 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 LRRN3Q9H3W5 708 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 TRABDQ9H4I3 376 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 SYNDIG1Q9H7V2 258 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 RMI1Q9H9A7 625 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 EPB41L5Q9HCM4 733 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 SATB2Q9UPW6 733 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 SHOC2Q9UQ13 582 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 TMEM98Q9Y2Y6 226 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 OAS3Q9Y6K5 1087 aaKnown RBP13.07□□□□□ -0.32
ERCC3-209ENST00000494464 RNF215Q9Y6U7 377 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 CHD6Q8TD26 2715 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 CCDC187A0A096LP49 1063 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 GPR89AB7ZAQ6 455 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 DNAJC6O75061 913 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 ZNF189O75820 626 aaPredicted RBP13.07□□□□□ -0.32
ERCC3-209ENST00000494464 PIRTP0C851 137 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 GPR89BP0CG08 455 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 HLA-DPA1P20036 260 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 CCKBRP32239 447 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 CETN2P41208 172 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 ACTR1BP42025 376 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 MLLT3P42568 568 aaPredicted RBP13.07□□□□□ -0.32
ERCC3-209ENST00000494464 TNNT3P45378 269 aaPredicted RBP13.07□□□□□ -0.32
ERCC3-209ENST00000494464 WNT3AP56704 352 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 ACTR1AP61163 376 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 CCL7P80098 99 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 DR1Q01658 176 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 OTUD4Q01804 1114 aaKnown RBP13.07□□□□□ -0.32
ERCC3-209ENST00000494464 EIF3IQ13347 325 aaKnown RBP13.07□□□□□ -0.32
ERCC3-209ENST00000494464 KLF1Q13351 362 aaPredicted RBP13.07□□□□□ -0.32
ERCC3-209ENST00000494464 MPP3Q13368 585 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 C3orf38Q5JPI3 329 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 PID1Q7Z2X4 250 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 KDELC2Q7Z4H8 507 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 CDKL3Q8IVW4 592 aaPredicted RBP13.07□□□□□ -0.32
ERCC3-209ENST00000494464 GSPT2Q8IYD1 628 aaKnown RBP13.07□□□□□ -0.32
ERCC3-209ENST00000494464 NAGSQ8N159 534 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 TRAM1L1Q8N609 369 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 GPR26Q8NDV2 337 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 WDR36Q8NI36 951 aaKnown RBP13.07□□□□□ -0.32
ERCC3-209ENST00000494464 OXNAD1Q96HP4 312 aaPredicted RBP13.07□□□□□ -0.32
ERCC3-209ENST00000494464 MRGPRX2Q96LB1 330 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 PLEKHG4BQ96PX9 1271 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 GBA3Q9H227 469 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 ASCL3Q9NQ33 180 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 FAM114A2Q9NRY5 505 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 UBP1Q9NZI7 540 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 LRIT1Q9P2V4 623 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 LHX6Q9UPM6 363 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 UTP11Q9Y3A2 253 aaKnown RBP13.07□□□□□ -0.32
ERCC3-209ENST00000494464 SPO11Q9Y5K1 396 aa13.07□□□□□ -0.32
ERCC3-209ENST00000494464 FAM208BQ5VWN6 2430 aa13.06□□□□□ -0.32
ERCC3-209ENST00000494464 ITPR1Q14643 2758 aa13.06□□□□□ -0.32
ERCC3-209ENST00000494464 A0A1W2PNU3 283 aaPredicted RBP13.06□□□□□ -0.32
ERCC3-209ENST00000494464 TMX2-CTNND1H3BSU7 103 aa13.06□□□□□ -0.32
ERCC3-209ENST00000494464 H7C0C1 242 aa13.06□□□□□ -0.32
ERCC3-209ENST00000494464 TTI1O43156 1089 aa13.06□□□□□ -0.32
ERCC3-209ENST00000494464 RRP8O43159 456 aaKnown RBP13.06□□□□□ -0.32
ERCC3-209ENST00000494464 TJP3O95049 919 aa13.06□□□□□ -0.32
ERCC3-209ENST00000494464 ASMTLO95671 621 aa13.06□□□□□ -0.32
ERCC3-209ENST00000494464 RBL1P28749 1068 aa13.06□□□□□ -0.32
ERCC3-209ENST00000494464 HMGCLP35914 325 aa13.06□□□□□ -0.32
ERCC3-209ENST00000494464 ABCG1P45844 678 aa13.06□□□□□ -0.32
ERCC3-209ENST00000494464 ATP5OP48047 213 aa13.06□□□□□ -0.32
ERCC3-209ENST00000494464 MAZP56270 477 aaKnown RBP13.06□□□□□ -0.32
ERCC3-209ENST00000494464 PCBP4P57723 403 aaKnown RBP13.06□□□□□ -0.32
ERCC3-209ENST00000494464 MRPS25P82663 173 aaKnown RBP13.06□□□□□ -0.32
ERCC3-209ENST00000494464 CLPPQ16740 277 aaPredicted RBP13.06□□□□□ -0.32
ERCC3-209ENST00000494464 COL28A1Q2UY09 1125 aa13.06□□□□□ -0.32
ERCC3-209ENST00000494464 SIRPB2Q5JXA9 342 aa13.06□□□□□ -0.32
ERCC3-209ENST00000494464 ALS2CLQ60I27 953 aa13.06□□□□□ -0.32
ERCC3-209ENST00000494464 ITPRIPL1Q6GPH6 555 aa13.06□□□□□ -0.32
ERCC3-209ENST00000494464 MARK2Q7KZI7 788 aaKnown RBP13.06□□□□□ -0.32
ERCC3-209ENST00000494464 ARL14Q8N4G2 192 aa13.06□□□□□ -0.32
ERCC3-209ENST00000494464 MREGQ8N565 214 aa13.06□□□□□ -0.32
ERCC3-209ENST00000494464 MAGOHBQ96A72 148 aaKnown RBP13.06□□□□□ -0.32
ERCC3-209ENST00000494464 TMEM74Q96NL1 305 aa13.06□□□□□ -0.32
ERCC3-209ENST00000494464 DCBLD2Q96PD2 775 aa13.06□□□□□ -0.32
ERCC3-209ENST00000494464 SPATA16Q9BXB7 569 aa13.06□□□□□ -0.32
ERCC3-209ENST00000494464 THSD1Q9NS62 852 aa13.06□□□□□ -0.32
ERCC3-209ENST00000494464 HOMER3Q9NSC5 361 aa13.06□□□□□ -0.32
ERCC3-209ENST00000494464 HACD3Q9P035 362 aa13.06□□□□□ -0.32
ERCC3-209ENST00000494464 RSPH14Q9UHP6 348 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms