RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 CPZQ66K79 652 aa13.76□□□□□ -0.21
VARS-227ENST00000489979 TRIM48Q8IWZ4 208 aa13.76□□□□□ -0.21
VARS-227ENST00000489979 AOPEPQ8N6M6 819 aa13.76□□□□□ -0.21
VARS-227ENST00000489979 LPCAT1Q8NF37 534 aa13.76□□□□□ -0.21
VARS-227ENST00000489979 ERGIC2Q96RQ1 377 aa13.76□□□□□ -0.21
VARS-227ENST00000489979 RUFY1Q96T51 708 aa13.76□□□□□ -0.21
VARS-227ENST00000489979 TDRD1Q9BXT4 1180 aaKnown RBP13.76□□□□□ -0.21
VARS-227ENST00000489979 FAM83DQ9H4H8 585 aa13.76□□□□□ -0.21
VARS-227ENST00000489979 ACTL8Q9H568 366 aa13.76□□□□□ -0.21
VARS-227ENST00000489979 CUEDC1Q9NWM3 386 aaPredicted RBP13.76□□□□□ -0.21
VARS-227ENST00000489979 ZNF624Q9P2J8 865 aaPredicted RBP13.76□□□□□ -0.21
VARS-227ENST00000489979 TTLL3Q9Y4R7 772 aa13.76□□□□□ -0.21
VARS-227ENST00000489979 PRRC2CQ9Y520 2896 aaKnown RBP13.76□□□□□ -0.21
VARS-227ENST00000489979 C1orf232A0A0U1RR37 186 aa13.75□□□□□ -0.21
VARS-227ENST00000489979 C21orf140B9A014 251 aa13.75□□□□□ -0.21
VARS-227ENST00000489979 TIAF1O95411 115 aa13.75□□□□□ -0.21
VARS-227ENST00000489979 FTLP02792 175 aaPredicted RBP13.75□□□□□ -0.21
VARS-227ENST00000489979 MT-ND3P03897 115 aa13.75□□□□□ -0.21
VARS-227ENST00000489979 RARAP10276 462 aa13.75□□□□□ -0.21
VARS-227ENST00000489979 CHAF1BQ13112 559 aa13.75□□□□□ -0.21
VARS-227ENST00000489979 PLA2G4EQ3MJ16 856 aa13.75□□□□□ -0.21
VARS-227ENST00000489979 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.75□□□□□ -0.21
VARS-227ENST00000489979 BOLA3Q53S33 107 aa13.75□□□□□ -0.21
VARS-227ENST00000489979 CACHD1Q5VU97 1274 aa13.75□□□□□ -0.21
VARS-227ENST00000489979 TXNRD3NBQ6F5E7 133 aa13.75□□□□□ -0.21
VARS-227ENST00000489979 FAM92BQ6ZTR7 304 aa13.75□□□□□ -0.21
VARS-227ENST00000489979 PRSS42Q7Z5A4 293 aa13.75□□□□□ -0.21
VARS-227ENST00000489979 PPP1R3BQ86XI6 285 aa13.75□□□□□ -0.21
VARS-227ENST00000489979 RSC1A1Q92681 617 aa13.75□□□□□ -0.21
VARS-227ENST00000489979 ZNF653Q96CK0 615 aa13.75□□□□□ -0.21
VARS-227ENST00000489979 LYSMD1Q96S90 227 aa13.75□□□□□ -0.21
VARS-227ENST00000489979 SLC25A23Q9BV35 468 aa13.75□□□□□ -0.21
VARS-227ENST00000489979 BRD8Q9H0E9 1235 aa13.75□□□□□ -0.21
VARS-227ENST00000489979 OR2AG1Q9H205 316 aa13.75□□□□□ -0.21
VARS-227ENST00000489979 AKIRIN1Q9H9L7 192 aaPredicted RBP13.75□□□□□ -0.21
VARS-227ENST00000489979 PCDH9Q9HC56 1237 aa13.75□□□□□ -0.21
VARS-227ENST00000489979 CASS4Q9NQ75 786 aa13.75□□□□□ -0.21
VARS-227ENST00000489979 PKD2L2Q9NZM6 624 aa13.75□□□□□ -0.21
VARS-227ENST00000489979 MYO1AQ9UBC5 1043 aa13.75□□□□□ -0.21
VARS-227ENST00000489979 SLC23A2Q9UGH3 650 aa13.75□□□□□ -0.21
VARS-227ENST00000489979 LIMA1Q9UHB6 759 aaKnown RBP13.75□□□□□ -0.21
VARS-227ENST00000489979 ADGRG1Q9Y653 693 aa13.75□□□□□ -0.21
VARS-227ENST00000489979 TEP1Q99973 2627 aaKnown RBP13.75□□□□□ -0.21
VARS-227ENST00000489979 PDZK1P1A8MUH7 402 aa13.74□□□□□ -0.21
VARS-227ENST00000489979 SORBS2O94875 1100 aaKnown RBP13.74□□□□□ -0.21
VARS-227ENST00000489979 COL8A1P27658 744 aa13.74□□□□□ -0.21
VARS-227ENST00000489979 CAPZBP47756 277 aa13.74□□□□□ -0.21
VARS-227ENST00000489979 CCL11P51671 97 aa13.74□□□□□ -0.21
VARS-227ENST00000489979 RPS18P62269 152 aaKnown RBP13.74□□□□□ -0.21
VARS-227ENST00000489979 SEPT7Q16181 437 aaKnown RBP13.74□□□□□ -0.21
VARS-227ENST00000489979 UGT8Q16880 541 aa13.74□□□□□ -0.21
VARS-227ENST00000489979 INSCQ1MX18 579 aa13.74□□□□□ -0.21
VARS-227ENST00000489979 EIF2S3LQ2VIR3 472 aaKnown RBP13.74□□□□□ -0.21
VARS-227ENST00000489979 TDRD12Q587J7 1177 aaKnown RBP13.74□□□□□ -0.21
VARS-227ENST00000489979 ZNF787Q6DD87 383 aa13.74□□□□□ -0.21
VARS-227ENST00000489979 ALG1LQ6GMV1 187 aa13.74□□□□□ -0.21
VARS-227ENST00000489979 IRGCQ6NXR0 463 aa13.74□□□□□ -0.21
VARS-227ENST00000489979 CRTC3Q6UUV7 619 aa13.74□□□□□ -0.21
VARS-227ENST00000489979 LRRC49Q8IUZ0 686 aa13.74□□□□□ -0.21
VARS-227ENST00000489979 ANKRD20A12PQ8NF67 263 aa13.74□□□□□ -0.21
VARS-227ENST00000489979 ARRDC2Q8TBH0 407 aa13.74□□□□□ -0.21
VARS-227ENST00000489979 THAP4Q8WY91 577 aa13.74□□□□□ -0.21
VARS-227ENST00000489979 KLHL6Q8WZ60 621 aa13.74□□□□□ -0.21
VARS-227ENST00000489979 ZDHHC12Q96GR4 267 aa13.74□□□□□ -0.21
VARS-227ENST00000489979 PCDH18Q9HCL0 1135 aa13.74□□□□□ -0.21
VARS-227ENST00000489979 RBM22Q9NW64 420 aaKnown RBP eCLIP13.74□□□□□ -0.21
VARS-227ENST00000489979 DTLQ9NZJ0 730 aa13.74□□□□□ -0.21
VARS-227ENST00000489979 DNAJC16Q9Y2G8 782 aa13.74□□□□□ -0.21
VARS-227ENST00000489979 PCDHGA9Q9Y5G4 932 aaKnown RBP13.74□□□□□ -0.21
VARS-227ENST00000489979 SCINQ9Y6U3 715 aa13.74□□□□□ -0.21
VARS-227ENST00000489979 RGSL1A5PLK6 1076 aa13.73□□□□□ -0.21
VARS-227ENST00000489979 ARGFXA6NJG6 315 aa13.73□□□□□ -0.21
VARS-227ENST00000489979 MTA2O94776 668 aa13.73□□□□□ -0.21
VARS-227ENST00000489979 SLC25A14O95258 325 aaPredicted RBP13.73□□□□□ -0.21
VARS-227ENST00000489979 DDAH2O95865 285 aa13.73□□□□□ -0.21
VARS-227ENST00000489979 NELFEP18615 380 aaKnown RBP13.73□□□□□ -0.21
VARS-227ENST00000489979 CA4P22748 312 aa13.73□□□□□ -0.21
VARS-227ENST00000489979 CES1P23141 567 aa13.73□□□□□ -0.21
VARS-227ENST00000489979 PTPN4P29074 926 aa13.73□□□□□ -0.21
VARS-227ENST00000489979 RPL26P61254 145 aaKnown RBP13.73□□□□□ -0.21
VARS-227ENST00000489979 NIPAL4Q0D2K0 466 aa13.73□□□□□ -0.21
VARS-227ENST00000489979 MRPL49Q13405 166 aaKnown RBP13.73□□□□□ -0.21
VARS-227ENST00000489979 QPCTQ16769 361 aa13.73□□□□□ -0.21
VARS-227ENST00000489979 PRR30Q53SZ7 412 aaPredicted RBP13.73□□□□□ -0.21
VARS-227ENST00000489979 ANKRD20A8PQ5CZ79 823 aa13.73□□□□□ -0.21
VARS-227ENST00000489979 PWWP2BQ6NUJ5 590 aa13.73□□□□□ -0.21
VARS-227ENST00000489979 FAM199XQ6PEV8 388 aaPredicted RBP13.73□□□□□ -0.21
VARS-227ENST00000489979 ADGRG6Q86SQ4 1221 aa13.73□□□□□ -0.21
VARS-227ENST00000489979 CCHCR1Q8TD31 782 aa13.73□□□□□ -0.21
VARS-227ENST00000489979 SEC14L1Q92503 715 aa13.73□□□□□ -0.21
VARS-227ENST00000489979 MAML1Q92585 1016 aa13.73□□□□□ -0.21
VARS-227ENST00000489979 SPATA16Q9BXB7 569 aa13.73□□□□□ -0.21
VARS-227ENST00000489979 GPR87Q9BY21 358 aa13.73□□□□□ -0.21
VARS-227ENST00000489979 TRIM39Q9HCM9 518 aa13.73□□□□□ -0.21
VARS-227ENST00000489979 PDE7BQ9NP56 450 aa13.73□□□□□ -0.21
VARS-227ENST00000489979 MLXIPLQ9NP71 852 aa13.73□□□□□ -0.21
VARS-227ENST00000489979 ACSS2Q9NR19 701 aa13.73□□□□□ -0.21
VARS-227ENST00000489979 POT1Q9NUX5 634 aa13.73□□□□□ -0.21
VARS-227ENST00000489979 RARRES3Q9UL19 164 aa13.73□□□□□ -0.21
VARS-227ENST00000489979 RPL26L1Q9UNX3 145 aaKnown RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms