RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 KIF15Q9NS87 1388 aa5.81□□□□□ -1.48
USP40-213ENST00000483216 NINLQ9Y2I6 1382 aa5.81□□□□□ -1.48
USP40-213ENST00000483216 ZNF644Q9H582 1327 aaPredicted RBP5.81□□□□□ -1.48
USP40-213ENST00000483216 ABCC2Q92887 1545 aa5.81□□□□□ -1.48
USP40-213ENST00000483216 C1orf226A1L170 272 aa5.81□□□□□ -1.48
USP40-213ENST00000483216 HSPA5P11021 654 aaKnown RBP5.81□□□□□ -1.48
USP40-213ENST00000483216 CD53P19397 219 aa5.81□□□□□ -1.48
USP40-213ENST00000483216 UBA7P41226 1012 aa5.81□□□□□ -1.48
USP40-213ENST00000483216 APOBEC1P41238 236 aaKnown RBP5.81□□□□□ -1.48
USP40-213ENST00000483216 PRCPP42785 496 aa5.81□□□□□ -1.48
USP40-213ENST00000483216 ZNF132P52740 706 aa5.81□□□□□ -1.48
USP40-213ENST00000483216 IRX6P78412 446 aaPredicted RBP5.81□□□□□ -1.48
USP40-213ENST00000483216 MRPS34P82930 218 aaKnown RBP5.81□□□□□ -1.48
USP40-213ENST00000483216 TFAP4Q01664 338 aa5.81□□□□□ -1.48
USP40-213ENST00000483216 FAM76BQ5HYJ3 339 aa5.81□□□□□ -1.48
USP40-213ENST00000483216 GPATCH4Q5T3I0 446 aaKnown RBP5.81□□□□□ -1.48
USP40-213ENST00000483216 SNX30Q5VWJ9 437 aa5.81□□□□□ -1.48
USP40-213ENST00000483216 SARM1Q6SZW1 724 aa5.81□□□□□ -1.48
USP40-213ENST00000483216 GLDNQ6ZMI3 551 aaPredicted RBP5.81□□□□□ -1.48
USP40-213ENST00000483216 C9orf139Q6ZV77 190 aa5.81□□□□□ -1.48
USP40-213ENST00000483216 ZNF771Q7L3S4 317 aaPredicted RBP5.81□□□□□ -1.48
USP40-213ENST00000483216 NR2C2APQ86WQ0 139 aa5.81□□□□□ -1.48
USP40-213ENST00000483216 KMT5CQ86Y97 462 aa5.81□□□□□ -1.48
USP40-213ENST00000483216 THAP6Q8TBB0 222 aa5.81□□□□□ -1.48
USP40-213ENST00000483216 FRAT1Q92837 279 aaPredicted RBP5.81□□□□□ -1.48
USP40-213ENST00000483216 QRFPRQ96P65 431 aa5.81□□□□□ -1.48
USP40-213ENST00000483216 CWC15Q9P013 229 aaKnown RBP5.81□□□□□ -1.48
USP40-213ENST00000483216 POU2F3Q9UKI9 436 aa5.81□□□□□ -1.48
USP40-213ENST00000483216 PADI3Q9ULW8 664 aa5.81□□□□□ -1.48
USP40-213ENST00000483216 PTPRCP08575 1304 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 DOCK7Q96N67 2140 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 PGPEP1LA6NFU8 196 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 CDH1P12830 882 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 MYOD1P15172 320 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 ARL3P36405 182 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 FUT6P51993 359 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 SETQ01105 290 aaPredicted RBP5.8□□□□□ -1.48
USP40-213ENST00000483216 MAD2L1Q13257 205 aaPredicted RBP5.8□□□□□ -1.48
USP40-213ENST00000483216 C18orf63Q68DL7 685 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 FAM180BQ6P0A1 224 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 FOXL2NBQ6ZUU3 175 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 CUZD1Q86UP6 607 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP5.8□□□□□ -1.48
USP40-213ENST00000483216 HACE1Q8IYU2 909 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 PDILTQ8N807 584 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 POMGNT1Q8WZA1 660 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 CD101Q93033 1021 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 PIGTQ969N2 578 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 FEM1CQ96JP0 617 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 PCYT2Q99447 389 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 CHMP4AQ9BY43 222 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 CSTL1Q9H114 145 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 SIL1Q9H173 461 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 ZHX3Q9H4I2 956 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 LRRC4Q9HBW1 653 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 DONSONQ9NYP3 566 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 FBXL2Q9UKC9 423 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 MTMR6Q9Y217 621 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 LAS1LQ9Y4W2 734 aaKnown RBP5.8□□□□□ -1.48
USP40-213ENST00000483216 CLIC4Q9Y696 253 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 SCN5AQ14524 2016 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 ANKRD30BQ9BXX2 1392 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 ANKRD30AQ9BXX3 1397 aa5.8□□□□□ -1.48
USP40-213ENST00000483216 ITIH6Q6UXX5 1313 aa5.79□□□□□ -1.48
USP40-213ENST00000483216 A0A1W2PS18 150 aa5.79□□□□□ -1.48
USP40-213ENST00000483216 PI4KAP2A4QPH2 592 aa5.79□□□□□ -1.48
USP40-213ENST00000483216 ASPDHA6ND91 283 aa5.79□□□□□ -1.48
USP40-213ENST00000483216 BMPR1BO00238 502 aa5.79□□□□□ -1.48
USP40-213ENST00000483216 HS3ST1O14792 307 aa5.79□□□□□ -1.48
USP40-213ENST00000483216 KCNN4O15554 427 aa5.79□□□□□ -1.48
USP40-213ENST00000483216 BAIAP3O94812 1187 aa5.79□□□□□ -1.48
USP40-213ENST00000483216 AMD1P17707 334 aa5.79□□□□□ -1.48
USP40-213ENST00000483216 UGT1A1P22309 533 aa5.79□□□□□ -1.48
USP40-213ENST00000483216 GNL1P36915 607 aaPredicted RBP5.79□□□□□ -1.48
USP40-213ENST00000483216 IL15P40933 162 aaPredicted RBP5.79□□□□□ -1.48
USP40-213ENST00000483216 TAS2R40P59535 323 aa5.79□□□□□ -1.48
USP40-213ENST00000483216 KRTAP10-9P60411 292 aa5.79□□□□□ -1.48
USP40-213ENST00000483216 DCAF7P61962 342 aa5.79□□□□□ -1.48
USP40-213ENST00000483216 MAMLD1Q13495 774 aa5.79□□□□□ -1.48
USP40-213ENST00000483216 EIF4A2Q14240 407 aaKnown RBP5.79□□□□□ -1.48
USP40-213ENST00000483216 NAB2Q15742 525 aa5.79□□□□□ -1.48
USP40-213ENST00000483216 PNLIPRP3Q17RR3 467 aa5.79□□□□□ -1.48
USP40-213ENST00000483216 MYLK3Q32MK0 819 aa5.79□□□□□ -1.48
USP40-213ENST00000483216 LCN10Q6JVE6 187 aa5.79□□□□□ -1.48
USP40-213ENST00000483216 OR5R1Q8NH85 324 aa5.79□□□□□ -1.48
USP40-213ENST00000483216 C1orf74Q96LT6 269 aa5.79□□□□□ -1.48
USP40-213ENST00000483216 ITPAQ9BY32 194 aa5.79□□□□□ -1.48
USP40-213ENST00000483216 ZNF112Q9UJU3 913 aa5.79□□□□□ -1.48
USP40-213ENST00000483216 FBXW11Q9UKB1 542 aa5.79□□□□□ -1.48
USP40-213ENST00000483216 ARHGEF5Q12774 1597 aa5.79□□□□□ -1.48
USP40-213ENST00000483216 PZPP20742 1482 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 RPRD2Q5VT52 1461 aaKnown RBP5.78□□□□□ -1.48
USP40-213ENST00000483216 KANSL1LA0AUZ9 987 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 FAM90A26D6RGX4 464 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 ATP2A1O14983 1001 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 ZNF432O94892 652 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 ITGA2P17301 1181 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 EEF1A1P68104 462 aaKnown RBP5.78□□□□□ -1.48
USP40-213ENST00000483216 PRAMEP78395 509 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 ZNF234Q14588 700 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms