RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 RPLP0P05388 317 aaKnown RBP14.04□□□□□ -0.16
VAMP4-203ENST00000474047 SLC2A4P14672 509 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 VCLP18206 1134 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 MSH3P20585 1137 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 ALDH4A1P30038 563 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 CCL7P80098 99 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 CYP4F3Q08477 520 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 GSE1Q14687 1217 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 POU6F1Q14863 301 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 PLA2G4EQ3MJ16 856 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 CDCP2Q5VXM1 449 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 DRICH1Q6PGQ1 229 aaPredicted RBP14.04□□□□□ -0.16
VAMP4-203ENST00000474047 C4orf22Q6V702 233 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 PRUNE1Q86TP1 453 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 TRAPPC5Q8IUR0 188 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 CCNJLQ8IV13 435 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 ARL14Q8N4G2 192 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 PDLIM2Q96JY6 352 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 TMEM121BQ9BXQ6 578 aaPredicted RBP14.04□□□□□ -0.16
VAMP4-203ENST00000474047 LRRN3Q9H3W5 708 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 STN1Q9H668 368 aaKnown RBP14.04□□□□□ -0.16
VAMP4-203ENST00000474047 PIH1D1Q9NWS0 290 aaKnown RBP14.04□□□□□ -0.16
VAMP4-203ENST00000474047 ST14Q9Y5Y6 855 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 SLC30A1Q9Y6M5 507 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 RP1P56715 2156 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 CEP295Q9C0D2 2601 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 SRP72O76094 671 aaKnown RBP14.04□□□□□ -0.16
VAMP4-203ENST00000474047 PNLIPP16233 465 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 ZNF7P17097 686 aaPredicted RBP14.04□□□□□ -0.16
VAMP4-203ENST00000474047 CDH17Q12864 832 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 CAMK2BQ13554 666 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 SIX1Q15475 284 aaPredicted RBP14.04□□□□□ -0.16
VAMP4-203ENST00000474047 KLHDC8BQ8IXV7 354 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 NAGSQ8N159 534 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 OR52K1Q8NGK4 314 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 OR13C4Q8NGS5 318 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 MDM1Q8TC05 714 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 PATE1Q8WXA2 126 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 DCUN1D1Q96GG9 259 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 NRSN2Q9GZP1 204 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 RABGEF1Q9UJ41 708 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 CRLS1Q9UJA2 301 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 TMPRSS11EQ9UL52 423 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 DNAJC16Q9Y2G8 782 aa14.04□□□□□ -0.16
VAMP4-203ENST00000474047 SCN8AQ9UQD0 1980 aa14.03□□□□□ -0.16
VAMP4-203ENST00000474047 CHD8Q9HCK8 2581 aa14.03□□□□□ -0.16
VAMP4-203ENST00000474047 CHUKO15111 745 aa14.03□□□□□ -0.16
VAMP4-203ENST00000474047 APRTP07741 180 aa14.03□□□□□ -0.16
VAMP4-203ENST00000474047 ZSCAN5DPP0CG00 497 aa14.03□□□□□ -0.16
VAMP4-203ENST00000474047 ITGALP20701 1170 aa14.03□□□□□ -0.16
VAMP4-203ENST00000474047 RPL22P35268 128 aaKnown RBP14.03□□□□□ -0.16
VAMP4-203ENST00000474047 KCNJ1P48048 391 aa14.03□□□□□ -0.16
VAMP4-203ENST00000474047 BASP1P80723 227 aaKnown RBP14.03□□□□□ -0.16
VAMP4-203ENST00000474047 LAMB3Q13751 1172 aa14.03□□□□□ -0.16
VAMP4-203ENST00000474047 ISXQ2M1V0 245 aa14.03□□□□□ -0.16
VAMP4-203ENST00000474047 AMZ1Q400G9 498 aa14.03□□□□□ -0.16
VAMP4-203ENST00000474047 GPRC6AQ5T6X5 926 aa14.03□□□□□ -0.16
VAMP4-203ENST00000474047 KDF1Q8NAX2 398 aaPredicted RBP14.03□□□□□ -0.16
VAMP4-203ENST00000474047 ULK4Q96C45 1275 aa14.03□□□□□ -0.16
VAMP4-203ENST00000474047 GRAMD1AQ96CP6 724 aa14.03□□□□□ -0.16
VAMP4-203ENST00000474047 MS4A14Q96JA4 679 aa14.03□□□□□ -0.16
VAMP4-203ENST00000474047 ZMYND15Q9H091 742 aa14.03□□□□□ -0.16
VAMP4-203ENST00000474047 PCYT1BQ9Y5K3 369 aaPredicted RBP14.03□□□□□ -0.16
VAMP4-203ENST00000474047 TMX2-CTNND1H3BSU7 103 aa14.02□□□□□ -0.16
VAMP4-203ENST00000474047 GPR39O43194 453 aa14.02□□□□□ -0.16
VAMP4-203ENST00000474047 LDB2O43679 373 aa14.02□□□□□ -0.16
VAMP4-203ENST00000474047 RALBP11234 206 aa14.02□□□□□ -0.16
VAMP4-203ENST00000474047 ZNF140P52738 457 aaPredicted RBP14.02□□□□□ -0.16
VAMP4-203ENST00000474047 SKIDA1Q1XH10 827 aa14.02□□□□□ -0.16
VAMP4-203ENST00000474047 KHDC1Q4VXA5 237 aaKnown RBP14.02□□□□□ -0.16
VAMP4-203ENST00000474047 ZRANB3Q5FWF4 1079 aa14.02□□□□□ -0.16
VAMP4-203ENST00000474047 TMEM220Q6QAJ8 160 aa14.02□□□□□ -0.16
VAMP4-203ENST00000474047 TAS2R42Q7RTR8 314 aa14.02□□□□□ -0.16
VAMP4-203ENST00000474047 SPRED1Q7Z699 444 aa14.02□□□□□ -0.16
VAMP4-203ENST00000474047 DDHD1Q8NEL9 900 aa14.02□□□□□ -0.16
VAMP4-203ENST00000474047 MAGOHBQ96A72 148 aaKnown RBP14.02□□□□□ -0.16
VAMP4-203ENST00000474047 DNAJC1Q96KC8 554 aaKnown RBP14.02□□□□□ -0.16
VAMP4-203ENST00000474047 FAM96AQ9H5X1 160 aa14.02□□□□□ -0.16
VAMP4-203ENST00000474047 SMOXQ9NWM0 555 aa14.02□□□□□ -0.16
VAMP4-203ENST00000474047 TBC1D29Q9UFV1 150 aa14.02□□□□□ -0.16
VAMP4-203ENST00000474047 ZMIZ1Q9ULJ6 1067 aa14.02□□□□□ -0.16
VAMP4-203ENST00000474047 PCDHB1Q9Y5F3 818 aa14.02□□□□□ -0.16
VAMP4-203ENST00000474047 ZFC3H1O60293 1989 aaKnown RBP14.02□□□□□ -0.17
VAMP4-203ENST00000474047 GOLGA6L10A0A0M3HER8 536 aa14.01□□□□□ -0.17
VAMP4-203ENST00000474047 CCDC78A2IDD5 438 aa14.01□□□□□ -0.17
VAMP4-203ENST00000474047 OR5K4A6NMS3 321 aa14.01□□□□□ -0.17
VAMP4-203ENST00000474047 PDZK1P1A8MUH7 402 aa14.01□□□□□ -0.17
VAMP4-203ENST00000474047 CFAP99D6REC4 459 aa14.01□□□□□ -0.17
VAMP4-203ENST00000474047 PGRMC1O00264 195 aaKnown RBP14.01□□□□□ -0.17
VAMP4-203ENST00000474047 CCL22O00626 93 aa14.01□□□□□ -0.17
VAMP4-203ENST00000474047 IDSP22304 550 aa14.01□□□□□ -0.17
VAMP4-203ENST00000474047 MC4RP32245 332 aa14.01□□□□□ -0.17
VAMP4-203ENST00000474047 OR1D5P58170 312 aa14.01□□□□□ -0.17
VAMP4-203ENST00000474047 MSLNQ13421 630 aaPredicted RBP14.01□□□□□ -0.17
VAMP4-203ENST00000474047 NFATC2Q13469 925 aa14.01□□□□□ -0.17
VAMP4-203ENST00000474047 SEMA5AQ13591 1074 aa14.01□□□□□ -0.17
VAMP4-203ENST00000474047 MAP9Q49MG5 647 aa14.01□□□□□ -0.17
VAMP4-203ENST00000474047 FOXR1Q6PIV2 292 aa14.01□□□□□ -0.17
VAMP4-203ENST00000474047 DET1Q7L5Y6 550 aa14.01□□□□□ -0.17
VAMP4-203ENST00000474047 SLC9B2Q86UD5 537 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms