RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 PLA2G4EQ3MJ16 856 aa19.51■□□□□ 0.71
COL9A3-210ENST00000472880 FAM182AQ5T1J6 154 aa19.51■□□□□ 0.71
COL9A3-210ENST00000472880 ZNF648Q5T619 568 aaPredicted RBP19.51■□□□□ 0.71
COL9A3-210ENST00000472880 LRRC38Q5VT99 294 aa19.51■□□□□ 0.71
COL9A3-210ENST00000472880 PDPK2PQ6A1A2 396 aa19.51■□□□□ 0.71
COL9A3-210ENST00000472880 CCDC70Q6NSX1 233 aa19.51■□□□□ 0.71
COL9A3-210ENST00000472880 CEACAM20Q6UY09 585 aa19.51■□□□□ 0.71
COL9A3-210ENST00000472880 ARHGAP22Q7Z5H3 698 aa19.51■□□□□ 0.71
COL9A3-210ENST00000472880 GLYATL1Q969I3 302 aa19.51■□□□□ 0.71
COL9A3-210ENST00000472880 CCDC42Q96M95 316 aa19.51■□□□□ 0.71
COL9A3-210ENST00000472880 SLC12A9Q9BXP2 914 aa19.51■□□□□ 0.71
COL9A3-210ENST00000472880 TRIM39Q9HCM9 518 aa19.51■□□□□ 0.71
COL9A3-210ENST00000472880 PRDM8Q9NQV8 689 aa19.51■□□□□ 0.71
COL9A3-210ENST00000472880 KLC4Q9NSK0 619 aa19.51■□□□□ 0.71
COL9A3-210ENST00000472880 SPTLC3Q9NUV7 552 aa19.51■□□□□ 0.71
COL9A3-210ENST00000472880 ADGRG1Q9Y653 693 aa19.51■□□□□ 0.71
COL9A3-210ENST00000472880 LILRA5A6NI73 299 aa19.5■□□□□ 0.71
COL9A3-210ENST00000472880 PPFIA2O75334 1257 aa19.5■□□□□ 0.71
COL9A3-210ENST00000472880 TNNT1P13805 278 aa19.5■□□□□ 0.71
COL9A3-210ENST00000472880 CLCNKAP51800 687 aa19.5■□□□□ 0.71
COL9A3-210ENST00000472880 MC2RQ01718 297 aa19.5■□□□□ 0.71
COL9A3-210ENST00000472880 SLC14A2Q15849 920 aa19.5■□□□□ 0.71
COL9A3-210ENST00000472880 BORAQ6PGQ7 559 aa19.5■□□□□ 0.71
COL9A3-210ENST00000472880 TMC3Q7Z5M5 1100 aa19.5■□□□□ 0.71
COL9A3-210ENST00000472880 ADGRG6Q86SQ4 1221 aa19.5■□□□□ 0.71
COL9A3-210ENST00000472880 TRIM48Q8IWZ4 208 aa19.5■□□□□ 0.71
COL9A3-210ENST00000472880 RHOT1Q8IXI2 618 aa19.5■□□□□ 0.71
COL9A3-210ENST00000472880 RNF25Q96BH1 459 aaPredicted RBP19.5■□□□□ 0.71
COL9A3-210ENST00000472880 RTP4Q96DX8 246 aa19.5■□□□□ 0.71
COL9A3-210ENST00000472880 CTRCQ99895 268 aa19.5■□□□□ 0.71
COL9A3-210ENST00000472880 ZPBPQ9BS86 351 aa19.5■□□□□ 0.71
COL9A3-210ENST00000472880 TBC1D10AQ9BXI6 508 aa19.5■□□□□ 0.71
COL9A3-210ENST00000472880 CLMPQ9H6B4 373 aa19.5■□□□□ 0.71
COL9A3-210ENST00000472880 DDX56Q9NY93 547 aaKnown RBP19.5■□□□□ 0.71
COL9A3-210ENST00000472880 TENM4Q6N022 2769 aa19.5■□□□□ 0.71
COL9A3-210ENST00000472880 A0A0A6YYK5 440 aaPredicted RBP19.49■□□□□ 0.71
COL9A3-210ENST00000472880 MFAP3LO75121 409 aa19.49■□□□□ 0.71
COL9A3-210ENST00000472880 NDST3O95803 873 aa19.49■□□□□ 0.71
COL9A3-210ENST00000472880 ITGB6P18564 788 aa19.49■□□□□ 0.71
COL9A3-210ENST00000472880 NOP2P46087 812 aaKnown RBP19.49■□□□□ 0.71
COL9A3-210ENST00000472880 UBE2IP63279 158 aaKnown RBP19.49■□□□□ 0.71
COL9A3-210ENST00000472880 B4GALNT4Q76KP1 1039 aa19.49■□□□□ 0.71
COL9A3-210ENST00000472880 LRRTM4Q86VH4 590 aa19.49■□□□□ 0.71
COL9A3-210ENST00000472880 PLXDC1Q8IUK5 500 aa19.49■□□□□ 0.71
COL9A3-210ENST00000472880 NLGN4XQ8N0W4 816 aa19.49■□□□□ 0.71
COL9A3-210ENST00000472880 NLGN4YQ8NFZ3 816 aaPredicted RBP19.49■□□□□ 0.71
COL9A3-210ENST00000472880 SPATA22Q8NHS9 363 aa19.49■□□□□ 0.71
COL9A3-210ENST00000472880 KIAA1143Q96AT1 154 aaPredicted RBP19.49■□□□□ 0.71
COL9A3-210ENST00000472880 TADA1Q96BN2 335 aa19.49■□□□□ 0.71
COL9A3-210ENST00000472880 PLEKHG4BQ96PX9 1271 aa19.49■□□□□ 0.71
COL9A3-210ENST00000472880 SRPK1Q96SB4 655 aaKnown RBP19.49■□□□□ 0.71
COL9A3-210ENST00000472880 CHP1Q99653 195 aa19.49■□□□□ 0.71
COL9A3-210ENST00000472880 TSPY26PQ9H489 355 aa19.49■□□□□ 0.71
COL9A3-210ENST00000472880 NHEJ1Q9H9Q4 299 aaPredicted RBP19.49■□□□□ 0.71
COL9A3-210ENST00000472880 GLOD4Q9HC38 313 aa19.49■□□□□ 0.71
COL9A3-210ENST00000472880 PILRAQ9UKJ1 303 aa19.49■□□□□ 0.71
COL9A3-210ENST00000472880 MN1Q10571 1320 aaPredicted RBP19.49■□□□□ 0.71
COL9A3-210ENST00000472880 ZNF891A8MT65 544 aaPredicted RBP19.48■□□□□ 0.71
COL9A3-210ENST00000472880 PDZK1P1A8MUH7 402 aa19.48■□□□□ 0.71
COL9A3-210ENST00000472880 CHUKO15111 745 aa19.48■□□□□ 0.71
COL9A3-210ENST00000472880 KMOO15229 486 aa19.48■□□□□ 0.71
COL9A3-210ENST00000472880 CAPN5O15484 640 aaPredicted RBP19.48■□□□□ 0.71
COL9A3-210ENST00000472880 SPOPO43791 374 aa19.48■□□□□ 0.71
COL9A3-210ENST00000472880 MT-CYBP00156 380 aaPredicted RBP19.48■□□□□ 0.71
COL9A3-210ENST00000472880 VIPP01282 170 aa19.48■□□□□ 0.71
COL9A3-210ENST00000472880 SLC1A1P43005 524 aa19.48■□□□□ 0.71
COL9A3-210ENST00000472880 NFKB2Q00653 900 aa19.48■□□□□ 0.71
COL9A3-210ENST00000472880 KCNC4Q03721 635 aa19.48■□□□□ 0.71
COL9A3-210ENST00000472880 CLCA4Q14CN2 919 aa19.48■□□□□ 0.71
COL9A3-210ENST00000472880 TEX44Q53QW1 395 aa19.48■□□□□ 0.71
COL9A3-210ENST00000472880 TIMM29Q9BSF4 260 aa19.48■□□□□ 0.71
COL9A3-210ENST00000472880 GPN2Q9H9Y4 310 aaPredicted RBP19.48■□□□□ 0.71
COL9A3-210ENST00000472880 UCK1Q9HA47 277 aa19.48■□□□□ 0.71
COL9A3-210ENST00000472880 FBXO8Q9NRD0 319 aa19.48■□□□□ 0.71
COL9A3-210ENST00000472880 GEMIN8Q9NWZ8 242 aaKnown RBP19.48■□□□□ 0.71
COL9A3-210ENST00000472880 DNAJC16Q9Y2G8 782 aa19.48■□□□□ 0.71
COL9A3-210ENST00000472880 ASH1LQ9NR48 2969 aaKnown RBP19.47■□□□□ 0.71
COL9A3-210ENST00000472880 VEGFDO43915 354 aa19.47■□□□□ 0.71
COL9A3-210ENST00000472880 MTX2O75431 263 aa19.47■□□□□ 0.71
COL9A3-210ENST00000472880 PMPCBO75439 489 aa19.47■□□□□ 0.71
COL9A3-210ENST00000472880 WISP1O95388 367 aa19.47■□□□□ 0.71
COL9A3-210ENST00000472880 ZNF7P17097 686 aaPredicted RBP19.47■□□□□ 0.71
COL9A3-210ENST00000472880 BPIP17213 487 aa19.47■□□□□ 0.71
COL9A3-210ENST00000472880 XRCC1P18887 633 aaPredicted RBP19.47■□□□□ 0.71
COL9A3-210ENST00000472880 MAP4P27816 1152 aaKnown RBP19.47■□□□□ 0.71
COL9A3-210ENST00000472880 TNNT3P45378 269 aaPredicted RBP19.47■□□□□ 0.71
COL9A3-210ENST00000472880 TFDP2Q14188 446 aa19.47■□□□□ 0.71
COL9A3-210ENST00000472880 SEPT7Q16181 437 aaKnown RBP19.47■□□□□ 0.71
COL9A3-210ENST00000472880 MFSD7Q6UXD7 560 aa19.47■□□□□ 0.71
COL9A3-210ENST00000472880 ATG14Q6ZNE5 492 aa19.47■□□□□ 0.71
COL9A3-210ENST00000472880 BZW1Q7L1Q6 419 aaKnown RBP19.47■□□□□ 0.71
COL9A3-210ENST00000472880 VSTM4Q8IW00 320 aa19.47■□□□□ 0.71
COL9A3-210ENST00000472880 CATSPER2Q96P56 530 aa19.47■□□□□ 0.71
COL9A3-210ENST00000472880 EFHD1Q9BUP0 239 aa19.47■□□□□ 0.71
COL9A3-210ENST00000472880 TRIM4Q9C037 500 aa19.47■□□□□ 0.71
COL9A3-210ENST00000472880 SLC25A18Q9H1K4 315 aa19.47■□□□□ 0.71
COL9A3-210ENST00000472880 ADNPQ9H2P0 1102 aa19.47■□□□□ 0.71
COL9A3-210ENST00000472880 APMAPQ9HDC9 416 aa19.47■□□□□ 0.71
COL9A3-210ENST00000472880 UBP1Q9NZI7 540 aa19.47■□□□□ 0.71
COL9A3-210ENST00000472880 HYOU1Q9Y4L1 999 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms