RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 SLC26A9Q7LBE3 791 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 TBC1D16Q8TBP0 767 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 DHX15O43143 795 aaKnown RBP13.23□□□□□ -0.29
COL6A3-209ENST00000472056 PSKH1P11801 424 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 GLDCP23378 1020 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 HADHBP55084 474 aaKnown RBP13.23□□□□□ -0.29
COL6A3-209ENST00000472056 MANFP55145 182 aaKnown RBP13.23□□□□□ -0.29
COL6A3-209ENST00000472056 KLHL35Q6PF15 583 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 SH3RF1Q7Z6J0 888 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 FAM83AQ86UY5 434 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 ZNF615Q8N8J6 731 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 BIRC8Q96P09 236 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 BCL7BQ9BQE9 202 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 ATP13A1Q9HD20 1204 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 MID1O15344 667 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 PDPK1O15530 556 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 SLC2A2P11168 524 aaPredicted RBP13.23□□□□□ -0.29
COL6A3-209ENST00000472056 RBL1P28749 1068 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 LCP2Q13094 533 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 KCNK18Q7Z418 384 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 OR4C6Q8NH72 309 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 LRRC3Q9BY71 257 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 OTOFQ9HC10 1997 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 MYOM1P52179 1685 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 SSTP61278 116 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 RPL38P63173 70 aaKnown RBP13.22□□□□□ -0.29
COL6A3-209ENST00000472056 DRICH1Q6PGQ1 229 aaPredicted RBP13.22□□□□□ -0.29
COL6A3-209ENST00000472056 CEP76Q8TAP6 659 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 PDP1Q9P0J1 537 aaPredicted RBP13.22□□□□□ -0.29
COL6A3-209ENST00000472056 NOTOA8MTQ0 251 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 OR10H2O60403 315 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 LSM3P62310 102 aaKnown RBP13.22□□□□□ -0.29
COL6A3-209ENST00000472056 SEC23AQ15436 765 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 AP5B1Q2VPB7 878 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 CUZD1Q86UP6 607 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 NKD2Q969F2 451 aaPredicted RBP13.22□□□□□ -0.29
COL6A3-209ENST00000472056 CNDP2Q96KP4 475 aaKnown RBP13.22□□□□□ -0.29
COL6A3-209ENST00000472056 C8orf48Q96LL4 319 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 COPS4Q9BT78 406 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 NUDT4Q9NZJ9 180 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 RP2O75695 350 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 CHRNA5P30532 468 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 CA9Q16790 459 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 GCNT6Q5T4J0 391 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 JAZF1Q86VZ6 243 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 CIB1Q99828 191 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 LRTM1Q9HBL6 345 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 PCDH18Q9HCL0 1135 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 FBXO9Q9UK97 447 aaPredicted RBP13.22□□□□□ -0.29
COL6A3-209ENST00000472056 UGT1A9O60656 530 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 UGT1A6P19224 532 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 CD72P21854 359 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 UGT1A1P22309 533 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 UGT1A4P22310 534 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 UGT1A3P35503 534 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 PPP2R2BQ00005 443 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 XKR6Q5GH73 641 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 FATE1Q969F0 183 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 DUSP9Q99956 384 aaKnown RBP13.22□□□□□ -0.29
COL6A3-209ENST00000472056 UGT1A7Q9HAW7 530 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 UGT1A10Q9HAW8 530 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 UGT1A8Q9HAW9 530 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 PRR5-ARHGAP8B1AHC4 643 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 PER2O15055 1255 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 TIPRLO75663 272 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 CLK2P49760 499 aaKnown RBP13.22□□□□□ -0.29
COL6A3-209ENST00000472056 ARHGAP8P85298 464 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 KLF10Q13118 480 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 CCDC86Q9H6F5 360 aaKnown RBP13.22□□□□□ -0.29
COL6A3-209ENST00000472056 LRRC4CQ9HCJ2 640 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 DERAQ9Y315 318 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 VWA7Q9Y334 891 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 ENTPD6O75354 484 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 ANXA8P13928 327 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 GSTM3P21266 225 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 MATKP42679 507 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 SLC5A3P53794 718 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.22□□□□□ -0.29
COL6A3-209ENST00000472056 ZSWIM2Q8NEG5 633 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 TLCD1Q96CP7 247 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 CDADC1Q9BWV3 514 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 FAM208AQ9UK61 1670 aaKnown RBP13.22□□□□□ -0.29
COL6A3-209ENST00000472056 NR2C1P13056 603 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 RARRES1P49788 294 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 SEPHS1P49903 392 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 IQCCQ4KMZ1 466 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 OR4L1Q8NH43 312 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 CCSER2Q9H7U1 834 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 SLC35C2Q9NQQ7 365 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 NCKAP1Q9Y2A7 1128 aa13.22□□□□□ -0.29
COL6A3-209ENST00000472056 GLYATQ6IB77 296 aa13.21□□□□□ -0.29
COL6A3-209ENST00000472056 ALYREFQ86V81 257 aaKnown RBP13.21□□□□□ -0.29
COL6A3-209ENST00000472056 CBR4Q8N4T8 237 aa13.21□□□□□ -0.29
COL6A3-209ENST00000472056 CD93Q9NPY3 652 aa13.21□□□□□ -0.29
COL6A3-209ENST00000472056 ZNF282Q9UDV7 671 aaPredicted RBP13.21□□□□□ -0.29
COL6A3-209ENST00000472056 TDRKHQ9Y2W6 561 aaKnown RBP13.21□□□□□ -0.29
COL6A3-209ENST00000472056 TRBC1P01850 177 aa13.21□□□□□ -0.29
COL6A3-209ENST00000472056 C10orf62Q5T681 223 aaPredicted RBP13.21□□□□□ -0.29
COL6A3-209ENST00000472056 ZNF613Q6PF04 617 aa13.21□□□□□ -0.29
COL6A3-209ENST00000472056 MAFIPQ8WZ33 124 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms